Wall clock time and date at job start Sat Apr 11 2020 06:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46976 * 2 1 4 4 C 1.53002 * 109.46919 * 240.00020 * 2 1 3 5 5 O 1.45200 * 109.46999 * 120.00052 * 2 1 3 6 6 C 1.34639 * 117.00252 * 57.95835 * 5 2 1 7 7 O 1.21513 * 119.99848 * 5.10805 * 6 5 2 8 8 N 1.34770 * 119.99753 * 185.11509 * 6 5 2 9 9 C 1.46503 * 119.99674 * 185.22265 * 8 6 5 10 10 C 1.50698 * 115.55561 * 303.10210 * 9 8 6 11 11 O 1.20829 * 120.00116 * 119.18333 * 10 9 8 12 12 O 1.34228 * 119.99871 * 299.18797 * 10 9 8 13 13 C 1.45194 * 116.99969 * 185.06319 * 12 10 9 14 14 C 1.53000 * 109.47239 * 184.62896 * 13 12 10 15 15 C 1.50703 * 113.00128 * 184.99751 * 14 13 12 16 16 H 1.08001 * 119.99902 * 233.49908 * 15 14 13 17 17 C 1.37874 * 119.99945 * 53.49918 * 15 14 13 18 18 N 1.31511 * 120.00113 * 18.56191 * 17 15 14 19 19 Si 1.86804 * 119.99987 * 198.83291 * 17 15 14 20 20 H 1.48501 * 109.47203 * 174.72499 * 19 17 15 21 21 H 1.48496 * 109.47157 * 294.72905 * 19 17 15 22 22 H 1.48504 * 109.46739 * 54.73141 * 19 17 15 23 23 C 1.54030 * 113.92953 * 316.93154 * 14 13 12 24 24 O 1.44177 * 85.52081 * 91.65595 * 23 14 13 25 25 C 1.44179 * 93.33845 * 24.19445 * 24 23 14 26 26 C 1.53004 * 117.51326 * 88.80421 * 9 8 6 27 27 C 1.52997 * 60.00386 * 107.48079 * 26 9 8 28 28 H 1.09004 * 109.47318 * 303.89953 * 1 2 3 29 29 H 1.08999 * 109.47617 * 63.90072 * 1 2 3 30 30 H 1.08998 * 109.47182 * 183.90407 * 1 2 3 31 31 H 1.09010 * 109.46875 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47549 * 299.99874 * 3 2 1 33 33 H 1.08993 * 109.47387 * 60.00210 * 3 2 1 34 34 H 1.08998 * 109.46962 * 299.99823 * 4 2 1 35 35 H 1.09003 * 109.47054 * 59.99989 * 4 2 1 36 36 H 1.08997 * 109.46994 * 180.02562 * 4 2 1 37 37 H 0.97000 * 120.00898 * 5.22835 * 8 6 5 38 38 H 1.09000 * 109.47111 * 64.63152 * 13 12 10 39 39 H 1.09001 * 109.47367 * 304.63317 * 13 12 10 40 40 H 0.97005 * 119.99750 * 1.97866 * 18 17 15 41 41 H 1.08998 * 113.87009 * 205.80776 * 23 14 13 42 42 H 1.09009 * 113.86399 * 337.51055 * 23 14 13 43 43 H 1.08997 * 113.86865 * 221.65823 * 25 24 23 44 44 H 1.09005 * 113.86494 * 89.94962 * 25 24 23 45 45 H 1.09003 * 117.49717 * 214.97251 * 26 9 8 46 46 H 1.08994 * 117.50348 * 359.97438 * 26 9 8 47 47 H 1.08995 * 117.50151 * 252.51502 * 27 26 9 48 48 H 1.09001 * 117.49980 * 107.48439 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0139 -0.6845 1.1856 6 6 1.6176 -1.9594 1.3600 7 8 0.9644 -2.5156 0.4995 8 7 1.9454 -2.6184 2.4889 9 6 1.6141 -4.0384 2.6305 10 6 0.1560 -4.3847 2.4720 11 8 -0.1947 -5.1344 1.5918 12 8 -0.7531 -3.8602 3.3087 13 6 -2.1219 -4.3241 3.1698 14 6 -3.0262 -3.5371 4.1205 15 6 -4.4481 -4.0363 4.1289 16 1 -5.2624 -3.3498 3.9499 17 6 -4.7094 -5.3693 4.3651 18 7 -3.7974 -6.1275 4.9332 19 14 -6.3562 -6.1000 3.8712 20 1 -6.3402 -7.5651 4.1133 21 1 -7.4361 -5.4768 4.6777 22 1 -6.6011 -5.8391 2.4299 23 6 -2.4296 -3.3352 5.5262 24 8 -1.8975 -2.1029 5.0000 25 6 -2.9043 -2.0088 3.9723 26 6 2.6404 -5.0570 2.1304 27 6 2.4299 -4.8577 3.6327 28 1 -0.3634 0.5732 0.8530 29 1 -0.3634 0.4521 -0.9228 30 1 -0.3633 -1.0253 0.0700 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8899 34 1 1.6766 -1.7489 -1.2492 35 1 1.6766 -0.2074 -2.1393 36 1 3.1299 -0.7217 -1.2491 37 1 2.4006 -2.1527 3.2078 38 1 -2.1727 -5.3849 3.4150 39 1 -2.4546 -4.1722 2.1429 40 1 -2.9518 -5.7426 5.2121 41 1 -3.1774 -3.1950 6.3067 42 1 -1.6668 -4.0676 5.7909 43 1 -2.5181 -1.6890 3.0045 44 1 -3.7972 -1.4635 4.2783 45 1 2.2610 -5.9775 1.6868 46 1 3.5622 -4.6708 1.6956 47 1 3.2131 -4.3402 4.1864 48 1 1.9118 -5.6471 4.1774 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650487593.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:40 Heat of formation + Delta-G solvation = -168.153351 kcal Electronic energy + Delta-G solvation = -32261.601801 eV Core-core repulsion = 27897.796110 eV Total energy + Delta-G solvation = -4363.805692 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.27966 -41.71339 -40.99501 -39.11027 -37.72264 -37.24216 -35.47953 -35.34945 -33.70160 -31.54668 -28.43445 -28.31920 -28.02386 -27.35041 -26.12471 -25.58765 -24.13370 -23.63148 -21.37213 -21.12607 -20.71934 -19.48650 -19.31332 -18.88738 -18.02468 -17.57043 -17.45337 -17.13037 -16.90161 -16.54196 -16.24426 -16.10566 -15.71191 -15.58456 -15.38852 -15.15328 -14.66157 -14.54997 -14.18154 -13.78502 -13.37592 -13.31906 -13.23944 -13.11487 -13.00347 -12.89761 -12.72574 -12.71154 -12.66287 -12.49627 -12.29074 -12.26496 -12.11293 -12.06894 -11.92866 -11.53853 -11.45490 -11.37215 -11.21086 -10.95553 -10.58535 -10.40903 -10.17351 -8.71781 -6.44919 0.65677 1.20536 1.40953 1.53726 1.59644 1.66023 1.79217 2.50107 2.51423 2.89590 2.94027 2.98745 3.44405 3.49445 3.61426 3.68789 3.70044 3.75001 3.89981 3.95139 4.21041 4.28073 4.37963 4.47228 4.50415 4.53351 4.54282 4.55558 4.71089 4.71553 4.72366 4.77522 4.79630 4.85076 4.97386 4.98958 5.06412 5.15035 5.22436 5.23925 5.30318 5.33798 5.45692 5.48031 5.86668 6.08315 6.21614 6.46583 6.63833 7.21237 7.29401 8.62352 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013122 B = 0.003668 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.374548 B = 7632.291850 C = 8413.508238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.126 3.874 3 C -0.132 4.132 4 C -0.178 4.178 5 O -0.359 6.359 6 C 0.646 3.354 7 O -0.584 6.584 8 N -0.654 5.654 9 C 0.080 3.920 10 C 0.482 3.518 11 O -0.530 6.530 12 O -0.339 6.339 13 C 0.103 3.897 14 C -0.006 4.006 15 C -0.619 4.619 16 H 0.062 0.938 17 C -0.007 4.007 18 N -0.909 5.909 19 Si 1.103 2.897 20 H -0.284 1.284 21 H -0.265 1.265 22 H -0.277 1.277 23 C 0.052 3.948 24 O -0.390 6.390 25 C 0.054 3.946 26 C -0.134 4.134 27 C -0.111 4.111 28 H 0.060 0.940 29 H 0.093 0.907 30 H 0.046 0.954 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.428 0.572 38 H 0.057 0.943 39 H 0.039 0.961 40 H 0.266 0.734 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.083 0.917 45 H 0.101 0.899 46 H 0.138 0.862 47 H 0.160 0.840 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.722 10.886 -5.353 20.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.090 3.910 3 C -0.189 4.189 4 C -0.235 4.235 5 O -0.273 6.273 6 C 0.400 3.600 7 O -0.474 6.474 8 N -0.316 5.316 9 C -0.009 4.009 10 C 0.324 3.676 11 O -0.419 6.419 12 O -0.255 6.255 13 C 0.029 3.971 14 C -0.007 4.007 15 C -0.655 4.655 16 H 0.080 0.920 17 C -0.210 4.210 18 N -0.543 5.543 19 Si 0.925 3.075 20 H -0.209 1.209 21 H -0.190 1.190 22 H -0.203 1.203 23 C -0.026 4.026 24 O -0.309 6.309 25 C -0.022 4.022 26 C -0.172 4.172 27 C -0.148 4.148 28 H 0.079 0.921 29 H 0.112 0.888 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.122 0.878 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.268 0.732 38 H 0.076 0.924 39 H 0.058 0.942 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.101 0.899 45 H 0.120 0.880 46 H 0.156 0.844 47 H 0.178 0.822 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 15.632 9.259 -6.044 19.147 hybrid contribution 0.255 1.136 0.001 1.164 sum 15.887 10.395 -6.043 19.924 Atomic orbital electron populations 1.22498 0.95106 1.02741 1.03785 1.22463 0.93749 0.93209 0.81592 1.21877 1.02816 0.89821 1.04384 1.22462 1.02043 1.01886 0.97089 1.86296 1.69429 1.23538 1.48086 1.18309 0.77966 0.81111 0.82631 1.90995 1.42862 1.69347 1.44154 1.43544 1.62934 1.08059 1.17096 1.19807 0.85047 0.81066 1.15027 1.23309 0.89063 0.76975 0.78247 1.90607 1.81644 1.36297 1.33317 1.86593 1.19700 1.63174 1.56011 1.22848 0.76437 0.98888 0.98878 1.21185 0.94335 0.93165 0.92011 1.21953 0.90662 0.97285 1.55622 0.91961 1.27106 1.07159 0.94600 0.92110 1.70951 1.08439 1.40456 1.34490 0.83118 0.71626 0.75705 0.77069 1.20926 1.18959 1.20271 1.24025 0.95735 0.85152 0.97656 1.89452 1.48202 1.44111 1.49160 1.23879 0.90718 0.96377 0.91277 1.23653 0.98065 0.97985 0.97516 1.23763 0.99517 0.98919 0.92620 0.92123 0.88800 0.93538 0.90317 0.87845 0.91309 0.92637 0.89083 0.90998 0.73154 0.92449 0.94246 0.92308 0.91290 0.91423 0.91467 0.89921 0.88022 0.84377 0.82213 0.86727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.80 8.39 71.98 0.60 -4.19 16 2 C 0.13 2.85 1.13 -10.79 -0.01 2.83 16 3 C -0.13 -1.89 8.85 71.98 0.64 -1.25 16 4 C -0.18 -3.85 8.41 71.98 0.61 -3.24 16 5 O -0.36 -9.53 9.94 -55.48 -0.55 -10.08 16 6 C 0.65 20.48 7.88 129.79 1.02 21.50 16 7 O -0.58 -23.00 10.99 19.80 0.22 -22.78 16 8 N -0.65 -17.40 5.49 -553.74 -3.04 -20.44 16 9 C 0.08 2.34 2.45 2.86 0.01 2.35 16 10 C 0.48 20.40 6.18 71.24 0.44 20.84 16 11 O -0.53 -25.97 16.25 21.96 0.36 -25.61 16 12 O -0.34 -15.57 8.63 -45.65 -0.39 -15.96 16 13 C 0.10 5.29 4.76 71.98 0.34 5.64 16 14 C -0.01 -0.31 0.73 -52.23 -0.04 -0.35 16 15 C -0.62 -33.11 8.36 25.60 0.21 -32.90 16 16 H 0.06 3.28 7.88 -2.91 -0.02 3.25 16 17 C -0.01 -0.38 5.07 84.65 0.43 0.05 16 18 N -0.91 -51.81 12.71 21.45 0.27 -51.54 16 19 Si 1.10 48.16 29.94 68.60 2.05 50.22 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 21 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 22 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 23 C 0.05 2.41 6.88 72.27 0.50 2.91 16 24 O -0.39 -17.83 11.60 -132.46 -1.54 -19.37 16 25 C 0.05 2.44 8.16 72.28 0.59 3.02 16 26 C -0.13 -2.98 9.97 30.59 0.31 -2.68 16 27 C -0.11 -2.10 10.15 30.60 0.31 -1.79 16 28 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 29 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.05 1.62 5.82 -2.39 -0.01 1.61 16 31 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.05 1.63 5.86 -2.39 -0.01 1.61 16 35 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.43 8.28 8.93 -92.71 -0.83 7.45 16 38 H 0.06 3.19 6.17 -2.39 -0.01 3.18 16 39 H 0.04 2.13 7.98 -2.39 -0.02 2.11 16 40 H 0.27 15.10 5.51 -92.70 -0.51 14.59 16 41 H 0.07 3.23 8.09 -2.39 -0.02 3.21 16 42 H 0.07 3.13 7.73 -2.38 -0.02 3.11 16 43 H 0.07 2.95 8.10 -2.39 -0.02 2.93 16 44 H 0.08 3.46 8.09 -2.38 -0.02 3.45 16 45 H 0.10 2.58 7.92 -2.39 -0.02 2.56 16 46 H 0.14 2.31 8.14 -2.39 -0.02 2.29 16 47 H 0.16 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -74.80 393.72 3.74 -71.06 By element: Atomic # 1 Polarization: 31.34 SS G_CDS: 0.41 Total: 31.75 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: 5.96 Total: 12.76 kcal Atomic # 7 Polarization: -69.21 SS G_CDS: -2.77 Total: -71.98 kcal Atomic # 8 Polarization: -91.90 SS G_CDS: -1.91 Total: -93.81 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 2.05 Total: 50.22 kcal Total: -74.80 3.74 -71.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650487593.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.093 kcal (2) G-P(sol) polarization free energy of solvation -74.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds