Wall clock time and date at job start Sat Apr 11 2020 06:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 113.99474 * 2 1 4 4 C 1.50708 * 109.47020 * 180.02562 * 3 2 1 5 5 N 1.30932 * 122.90809 * 90.02111 * 4 3 2 6 6 C 1.29427 * 117.36483 * 179.97438 * 5 4 3 7 7 S 1.70948 * 110.39152 * 0.02562 * 6 5 4 8 8 C 1.35668 * 122.89800 * 269.98429 * 4 3 2 9 9 C 1.46676 * 126.13335 * 0.02562 * 8 4 3 10 10 O 1.21692 * 120.00001 * 0.02562 * 9 8 4 11 11 N 1.34778 * 120.00290 * 179.97438 * 9 8 4 12 12 C 1.46494 * 120.00176 * 174.79484 * 11 9 8 13 13 H 1.09005 * 109.47166 * 328.11143 * 12 11 9 14 14 C 1.53002 * 109.46833 * 208.11627 * 12 11 9 15 15 N 1.46499 * 109.47265 * 54.99985 * 14 12 11 16 16 C 1.36941 * 119.99847 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00158 * 0.02562 * 16 15 14 18 18 C 1.38810 * 119.99613 * 180.02562 * 16 15 14 19 19 N 1.31622 * 120.00382 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99881 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47191 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47286 * 119.99739 * 20 18 16 23 23 H 1.48505 * 109.47416 * 239.99966 * 20 18 16 24 24 C 1.53001 * 109.47302 * 88.11566 * 12 11 9 25 25 C 1.53002 * 109.47019 * 184.07292 * 24 12 11 26 26 C 1.52995 * 109.47240 * 66.13421 * 25 24 12 27 27 C 1.53004 * 109.47037 * 186.13371 * 25 24 12 28 28 H 1.08998 * 109.46852 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47097 * 300.00080 * 1 2 3 30 30 H 1.09002 * 109.47514 * 60.00249 * 1 2 3 31 31 H 1.08996 * 109.47859 * 60.00047 * 3 2 1 32 32 H 1.09002 * 109.47591 * 299.99663 * 3 2 1 33 33 H 1.08004 * 124.80771 * 179.73133 * 6 5 4 34 34 H 0.96998 * 119.99277 * 354.79498 * 11 9 8 35 35 H 1.09007 * 109.46679 * 174.99660 * 14 12 11 36 36 H 1.08994 * 109.47347 * 294.99605 * 14 12 11 37 37 H 0.96996 * 119.99855 * 0.02562 * 15 14 12 38 38 H 0.96994 * 120.00121 * 180.02562 * 19 18 16 39 39 H 1.08997 * 109.47081 * 304.07430 * 24 12 11 40 40 H 1.08999 * 109.47070 * 64.07511 * 24 12 11 41 41 H 1.08999 * 109.47008 * 306.13361 * 25 24 12 42 42 H 1.09004 * 109.47561 * 183.69610 * 26 25 24 43 43 H 1.09004 * 109.47279 * 303.69593 * 26 25 24 44 44 H 1.09002 * 109.47404 * 63.69423 * 26 25 24 45 45 H 1.09000 * 109.46528 * 59.99841 * 27 25 24 46 46 H 1.08999 * 109.47169 * 180.02562 * 27 25 24 47 47 H 1.09004 * 109.46886 * 300.00156 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2212 1.1311 -1.1002 6 6 5.5055 1.0299 -0.9757 7 16 5.9428 0.9943 0.6765 8 6 4.2476 1.1286 1.1382 9 6 3.7249 1.1696 2.5080 10 8 2.5268 1.2634 2.6996 11 7 4.5713 1.1023 3.5547 12 6 4.0624 1.2576 4.9195 13 1 3.2091 1.9359 4.9141 14 6 5.1643 1.8316 5.8124 15 7 5.6646 3.0792 5.2300 16 6 6.6608 3.7773 5.8588 17 1 7.0780 3.4079 6.7839 18 6 7.1344 4.9598 5.3071 19 7 6.6256 5.4103 4.1799 20 14 8.4938 5.9117 6.1645 21 1 8.8903 5.1991 7.4056 22 1 9.6667 6.0224 5.2606 23 1 8.0047 7.2709 6.5095 24 6 3.6267 -0.1059 5.4597 25 6 3.0018 0.0704 6.8452 26 6 1.6995 0.8636 6.7201 27 6 2.7060 -1.3036 7.4498 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.6885 1.8465 0.8899 32 1 1.6885 1.8464 -0.8900 33 1 6.2020 0.9711 -1.7991 34 1 5.5175 0.9509 3.4041 35 1 4.7607 2.0303 6.8053 36 1 5.9807 1.1135 5.8892 37 1 5.2896 3.4112 4.3993 38 1 6.9568 6.2363 3.7943 39 1 2.8940 -0.5471 4.7841 40 1 4.4942 -0.7617 5.5333 41 1 3.6952 0.6097 7.4905 42 1 1.2882 1.0459 7.7130 43 1 1.8999 1.8161 6.2294 44 1 0.9825 0.2941 6.1288 45 1 3.6338 -1.8687 7.5388 46 1 2.2604 -1.1781 8.4366 47 1 2.0126 -1.8429 6.8044 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667112227.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:46 Heat of formation + Delta-G solvation = -33.645604 kcal Electronic energy + Delta-G solvation = -28309.366559 eV Core-core repulsion = 24426.439183 eV Total energy + Delta-G solvation = -3882.927376 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.40536 -39.23738 -37.47767 -37.15810 -34.86719 -33.59129 -31.59759 -31.00790 -29.35900 -27.82026 -27.02808 -26.15279 -25.56521 -24.54486 -23.05760 -22.16970 -20.86768 -19.64278 -19.23098 -18.61106 -17.25314 -16.68701 -16.48296 -16.11423 -15.50247 -15.33847 -15.11492 -14.88207 -14.68595 -14.45343 -14.06258 -13.78098 -13.56627 -13.43830 -13.24205 -12.93186 -12.80578 -12.40507 -12.24680 -12.16908 -11.92994 -11.68747 -11.53919 -11.27484 -11.13545 -10.91145 -10.80273 -10.79359 -10.47691 -10.25461 -10.09979 -9.99166 -9.79063 -9.77503 -9.53574 -9.40223 -9.03418 -8.95344 -8.71038 -6.99685 -5.81676 -3.11679 0.22547 1.17111 1.55264 2.36982 3.22218 3.32645 3.39476 3.45456 3.47454 3.85684 4.32088 4.53451 4.85040 4.92836 4.98920 5.00915 5.07385 5.15352 5.29457 5.39230 5.40875 5.51119 5.52080 5.54069 5.65067 5.67229 5.73673 5.74874 5.83101 5.91251 5.98814 6.00498 6.10082 6.16316 6.19437 6.33251 6.39542 6.48649 6.57632 6.67382 6.86488 7.13810 7.51885 7.65218 7.70934 8.33718 8.36036 9.47863 10.03144 10.38505 11.40562 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007863 B = 0.004320 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3560.211017 B = 6479.264911 C = 9029.529191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.380 6.380 3 C 0.131 3.869 4 C 0.131 3.869 5 N -0.465 5.465 6 C 0.021 3.979 7 S 0.197 5.803 8 C -0.263 4.263 9 C 0.598 3.402 10 O -0.523 6.523 11 N -0.704 5.704 12 C 0.137 3.863 13 H 0.094 0.906 14 C 0.143 3.857 15 N -0.731 5.731 16 C -0.242 4.242 17 H 0.071 0.929 18 C -0.010 4.010 19 N -0.930 5.930 20 Si 0.906 3.094 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.292 1.292 24 C -0.120 4.120 25 C -0.097 4.097 26 C -0.148 4.148 27 C -0.144 4.144 28 H 0.083 0.917 29 H 0.046 0.954 30 H 0.039 0.961 31 H 0.095 0.905 32 H 0.062 0.938 33 H 0.206 0.794 34 H 0.401 0.599 35 H 0.038 0.962 36 H 0.024 0.976 37 H 0.385 0.615 38 H 0.255 0.745 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.078 0.922 42 H 0.050 0.950 43 H 0.061 0.939 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.052 0.948 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.981 -13.441 -5.842 16.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.299 6.299 3 C 0.052 3.948 4 C -0.008 4.008 5 N -0.179 5.179 6 C -0.274 4.274 7 S 0.453 5.547 8 C -0.388 4.388 9 C 0.382 3.618 10 O -0.402 6.402 11 N -0.354 5.354 12 C 0.033 3.967 13 H 0.112 0.888 14 C 0.015 3.985 15 N -0.376 5.376 16 C -0.373 4.373 17 H 0.089 0.911 18 C -0.207 4.207 19 N -0.578 5.578 20 Si 0.737 3.263 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.159 4.159 25 C -0.116 4.116 26 C -0.205 4.205 27 C -0.201 4.201 28 H 0.102 0.898 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.112 0.888 32 H 0.080 0.920 33 H 0.222 0.778 34 H 0.236 0.764 35 H 0.056 0.944 36 H 0.042 0.958 37 H 0.219 0.781 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.096 0.904 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.780 -13.533 -5.594 16.137 hybrid contribution 0.278 1.029 -0.132 1.074 sum -6.502 -12.503 -5.726 15.212 Atomic orbital electron populations 1.22697 0.80735 1.02518 1.00105 1.87871 1.19755 1.26758 1.95516 1.21013 0.85277 0.85912 1.02600 1.20145 0.97024 0.98260 0.85332 1.66002 1.05043 1.15689 1.31181 1.28652 0.95182 1.02755 1.00856 1.84209 1.04986 1.63001 1.02553 1.25709 0.96797 1.16901 0.99425 1.16604 0.86183 0.76658 0.82331 1.90756 1.14330 1.50263 1.84832 1.45863 1.11041 1.72337 1.06114 1.21423 0.98482 0.96829 0.79976 0.88779 1.21043 0.93096 0.89360 0.94984 1.42362 1.44102 1.22933 1.28240 1.19247 1.10873 1.02582 1.04603 0.91074 1.24735 1.00174 0.98260 0.97509 1.69675 1.44987 1.23163 1.19993 0.86143 0.81625 0.79950 0.78599 1.20544 1.21863 1.21874 1.21974 1.00570 0.96936 0.96445 1.21135 0.97677 0.96453 0.96296 1.21874 0.96860 1.00597 1.01163 1.21823 1.01236 0.96749 1.00333 0.89813 0.93569 0.94272 0.88765 0.92016 0.77760 0.76442 0.94394 0.95843 0.78100 0.93533 0.91466 0.91859 0.90369 0.93120 0.92029 0.92907 0.92877 0.92896 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 11.01 101.05 1.11 1.51 16 2 O -0.38 -5.77 10.69 -35.23 -0.38 -6.15 16 3 C 0.13 1.97 5.74 36.01 0.21 2.18 16 4 C 0.13 2.09 6.42 -83.89 -0.54 1.55 16 5 N -0.47 -6.83 10.50 -11.53 -0.12 -6.95 16 6 C 0.02 0.24 12.22 51.75 0.63 0.87 16 7 S 0.20 2.48 22.36 -107.50 -2.40 0.08 16 8 C -0.26 -4.19 6.48 -37.10 -0.24 -4.43 16 9 C 0.60 10.36 7.76 -12.85 -0.10 10.26 16 10 O -0.52 -9.92 13.94 5.20 0.07 -9.85 16 11 N -0.70 -11.57 4.48 -55.12 -0.25 -11.81 16 12 C 0.14 2.25 2.08 -67.93 -0.14 2.11 16 13 H 0.09 1.73 5.77 -51.93 -0.30 1.43 16 14 C 0.14 2.70 5.45 -4.04 -0.02 2.68 16 15 N -0.73 -17.65 5.43 -59.91 -0.33 -17.98 16 16 C -0.24 -6.51 9.99 -15.06 -0.15 -6.66 16 17 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 18 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 19 N -0.93 -27.41 13.06 55.49 0.72 -26.68 16 20 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 C -0.12 -1.64 4.47 -26.73 -0.12 -1.76 16 25 C -0.10 -1.20 2.78 -90.62 -0.25 -1.45 16 26 C -0.15 -1.88 9.05 37.16 0.34 -1.54 16 27 C -0.14 -1.51 9.19 37.16 0.34 -1.17 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 1.51 6.01 -51.93 -0.31 1.20 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.21 1.50 8.06 -52.48 -0.42 1.08 16 34 H 0.40 6.32 7.83 -40.82 -0.32 6.00 16 35 H 0.04 0.72 6.66 -51.93 -0.35 0.37 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.38 9.99 7.33 -40.82 -0.30 9.69 16 38 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.08 1.02 6.37 -51.93 -0.33 0.69 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.88 6.36 -51.93 -0.33 0.55 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 397.72 15.07 5.99 5.99 Total: -1.00 -32.45 397.72 -8.02 -40.46 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -7.28 Total: 12.30 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 0.97 Total: 3.76 kcal Atomic # 7 Polarization: -63.46 SS G_CDS: 0.03 Total: -63.43 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.30 Total: -16.00 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -2.40 Total: 0.08 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.45 -8.02 -40.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667112227.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.817 kcal (2) G-P(sol) polarization free energy of solvation -32.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds