Wall clock time and date at job start Sat Apr 11 2020 06:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47231 * 2 1 4 4 C 1.53003 * 109.47054 * 240.00215 * 2 1 3 5 5 C 1.52997 * 109.47207 * 119.99885 * 2 1 3 6 6 C 1.50701 * 109.47059 * 60.00256 * 5 2 1 7 7 N 1.29429 * 124.80706 * 89.97091 * 6 5 2 8 8 C 1.30940 * 117.36691 * 180.02562 * 7 6 5 9 9 C 1.35662 * 114.19144 * 0.02562 * 8 7 6 10 10 C 1.46682 * 126.13592 * 179.97438 * 9 8 7 11 11 O 1.21680 * 120.00692 * 180.02562 * 10 9 8 12 12 N 1.34783 * 119.99500 * 0.02652 * 10 9 8 13 13 C 1.46497 * 119.99638 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.46900 * 180.02562 * 13 12 10 15 15 H 1.08999 * 109.47164 * 60.00014 * 14 13 12 16 16 O 1.42903 * 109.47171 * 299.99748 * 14 13 12 17 17 C 1.53003 * 109.47376 * 180.02562 * 14 13 12 18 18 N 1.46494 * 109.47283 * 185.00021 * 17 14 13 19 19 C 1.36937 * 120.00022 * 179.97438 * 18 17 14 20 20 H 1.08002 * 120.00269 * 0.02562 * 19 18 17 21 21 C 1.38819 * 120.00106 * 179.97438 * 19 18 17 22 22 N 1.31616 * 119.99813 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99927 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46930 * 60.00673 * 23 21 19 25 25 H 1.48496 * 109.46947 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47190 * 300.00622 * 23 21 19 27 27 S 1.70954 * 124.80371 * 270.28951 * 6 5 2 28 28 H 1.09006 * 109.47445 * 299.99705 * 1 2 3 29 29 H 1.08999 * 109.47133 * 59.99700 * 1 2 3 30 30 H 1.09003 * 109.47266 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47284 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.47090 * 300.00462 * 3 2 1 33 33 H 1.09006 * 109.46665 * 59.99817 * 3 2 1 34 34 H 1.09003 * 109.47031 * 300.00079 * 4 2 1 35 35 H 1.08999 * 109.47081 * 60.00054 * 4 2 1 36 36 H 1.08998 * 109.47175 * 179.97438 * 4 2 1 37 37 H 1.08998 * 109.47524 * 299.99938 * 5 2 1 38 38 H 1.08998 * 109.47033 * 179.97438 * 5 2 1 39 39 H 1.08004 * 122.90759 * 180.02562 * 8 7 6 40 40 H 0.96996 * 120.00052 * 0.02562 * 12 10 9 41 41 H 1.08999 * 109.47200 * 60.00094 * 13 12 10 42 42 H 1.08997 * 109.47487 * 300.00148 * 13 12 10 43 43 H 0.96700 * 114.00311 * 300.00378 * 16 14 13 44 44 H 1.09005 * 109.46682 * 304.99749 * 17 14 13 45 45 H 1.08999 * 109.47221 * 64.99915 * 17 14 13 46 46 H 0.96999 * 120.00388 * 359.97438 * 18 17 14 47 47 H 0.96997 * 120.00150 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 6 1.5377 -2.1420 1.2492 7 7 2.1589 -3.1453 0.7174 8 6 1.5875 -4.3204 0.8018 9 6 0.3964 -4.3140 1.4510 10 6 -0.4628 -5.4778 1.6935 11 8 -1.5144 -5.3440 2.2908 12 7 -0.0874 -6.6957 1.2546 13 6 -0.9452 -7.8582 1.4973 14 6 -0.2920 -9.1071 0.9020 15 1 0.6789 -9.2678 1.3707 16 8 -0.1180 -8.9290 -0.5052 17 6 -1.1881 -10.3212 1.1548 18 7 -0.5094 -11.5340 0.6916 19 6 -1.1230 -12.7519 0.8160 20 1 -2.1074 -12.8183 1.2553 21 6 -0.4801 -13.9011 0.3766 22 7 0.7194 -13.8202 -0.1591 23 14 -1.3168 -15.5625 0.5471 24 1 -2.5937 -15.5537 -0.2111 25 1 -0.4275 -16.6222 0.0073 26 1 -1.5942 -15.8323 1.9807 27 16 0.0630 -2.6557 1.9449 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6766 -0.2073 -2.1392 36 1 3.1299 -0.7208 -1.2495 37 1 1.6767 -0.2074 2.1392 38 1 3.1300 -0.7216 1.2490 39 1 2.0266 -5.2172 0.3902 40 1 0.7511 -6.8025 0.7787 41 1 -1.9162 -7.6973 1.0289 42 1 -1.0776 -7.9943 2.5705 43 1 -0.9427 -8.7807 -0.9879 44 1 -1.3937 -10.4050 2.2220 45 1 -2.1258 -10.1999 0.6125 46 1 0.3746 -11.4744 0.2968 47 1 1.1688 -14.6232 -0.4658 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667918867.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:50 Heat of formation + Delta-G solvation = -48.914827 kcal Electronic energy + Delta-G solvation = -26508.766938 eV Core-core repulsion = 22625.177439 eV Total energy + Delta-G solvation = -3883.589499 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.56469 -39.57267 -37.90213 -37.58546 -34.50486 -34.04743 -31.88336 -31.24162 -29.48210 -28.26839 -27.79324 -27.64153 -25.41175 -24.70237 -22.84220 -21.87032 -21.44485 -20.07009 -19.38608 -18.30795 -17.56644 -17.16249 -16.40454 -16.15479 -15.84243 -15.38429 -15.18526 -14.97461 -14.86584 -14.53587 -14.48589 -13.96294 -13.84484 -13.66778 -13.43923 -13.02702 -12.92331 -12.72513 -12.52524 -12.38093 -12.20859 -12.08934 -11.91510 -11.85809 -11.42053 -11.25792 -11.16921 -10.98869 -10.81724 -10.70916 -10.57943 -10.22793 -9.88971 -9.82165 -9.73786 -9.56155 -9.32025 -9.11860 -8.91994 -6.96480 -5.77999 -3.07938 -0.08169 0.81201 1.34755 2.14912 2.97216 3.03389 3.43199 3.47479 3.48690 3.61579 4.22392 4.26669 4.35553 4.50391 4.55297 4.67776 4.71213 4.81438 4.90742 4.94205 5.00975 5.14795 5.17607 5.24480 5.31632 5.34014 5.48495 5.50755 5.53274 5.56555 5.58253 5.67139 5.72715 5.77240 5.86161 5.89495 5.96897 6.13805 6.25521 6.47450 6.62978 7.24299 7.28693 7.66166 7.86957 7.96547 8.39962 9.51633 10.07673 10.43301 11.44219 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.031285 B = 0.001718 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.774093 B =16292.167101 C =16762.785334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.063 4.063 3 C -0.140 4.140 4 C -0.141 4.141 5 C -0.039 4.039 6 C 0.049 3.951 7 N -0.472 5.472 8 C 0.095 3.905 9 C -0.298 4.298 10 C 0.592 3.408 11 O -0.539 6.539 12 N -0.707 5.707 13 C 0.091 3.909 14 C 0.089 3.911 15 H 0.106 0.894 16 O -0.553 6.553 17 C 0.128 3.872 18 N -0.725 5.725 19 C -0.246 4.246 20 H 0.070 0.930 21 C -0.011 4.011 22 N -0.930 5.930 23 Si 0.909 3.091 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.286 1.286 27 S 0.225 5.775 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.182 0.818 40 H 0.406 0.594 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.374 0.626 44 H 0.029 0.971 45 H 0.024 0.976 46 H 0.388 0.612 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.655 33.046 1.610 33.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.065 4.065 3 C -0.197 4.197 4 C -0.198 4.198 5 C -0.080 4.080 6 C -0.225 4.225 7 N -0.186 5.186 8 C -0.064 4.064 9 C -0.422 4.422 10 C 0.377 3.623 11 O -0.418 6.418 12 N -0.359 5.359 13 C -0.033 4.033 14 C 0.029 3.971 15 H 0.124 0.876 16 O -0.357 6.357 17 C -0.001 4.001 18 N -0.370 5.370 19 C -0.377 4.377 20 H 0.088 0.912 21 C -0.208 4.208 22 N -0.578 5.578 23 Si 0.740 3.260 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.212 1.212 27 S 0.484 5.516 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.107 0.893 38 H 0.117 0.883 39 H 0.199 0.801 40 H 0.242 0.758 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.221 0.779 44 H 0.047 0.953 45 H 0.041 0.959 46 H 0.223 0.777 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.087 33.539 2.539 33.699 hybrid contribution 0.058 -1.929 -0.744 2.068 sum 2.145 31.609 1.795 31.733 Atomic orbital electron populations 1.22089 0.94303 1.02331 1.02454 1.20534 0.95953 0.95522 0.94510 1.21851 1.01270 0.94371 1.02206 1.21880 1.01400 1.00480 0.96038 1.20511 1.02499 0.85750 0.99200 1.27477 0.96039 1.00113 0.98893 1.66156 1.34065 0.98409 1.20007 1.22240 0.90854 0.96397 0.96876 1.25789 1.02889 0.99373 1.14187 1.16710 0.84691 0.81832 0.79082 1.90851 1.23790 1.85403 1.41719 1.45657 1.25251 1.06710 1.58250 1.22183 0.94197 0.84671 1.02287 1.22420 1.00803 0.91959 0.81953 0.87590 1.86580 1.36063 1.94620 1.18474 1.21193 0.94249 0.86818 0.97860 1.42217 1.20161 1.00852 1.73789 1.19176 0.99985 0.84432 1.34112 0.91238 1.24762 0.96765 0.97915 1.01326 1.69662 1.13688 1.28102 1.46336 0.86248 0.78345 0.83782 0.77665 1.21234 1.21632 1.21228 1.84094 1.19280 0.97655 1.50592 0.92172 0.91890 0.92499 0.92244 0.92102 0.92375 0.92252 0.92708 0.92204 0.89330 0.88311 0.80092 0.75822 0.90691 0.90052 0.77910 0.95319 0.95862 0.77716 0.93398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 8.01 37.16 0.30 -0.58 16 2 C -0.06 -0.34 0.80 -154.51 -0.12 -0.47 16 3 C -0.14 -0.56 8.47 37.16 0.31 -0.24 16 4 C -0.14 -0.94 8.17 37.16 0.30 -0.64 16 5 C -0.04 -0.22 4.86 -27.88 -0.14 -0.36 16 6 C 0.05 0.41 4.93 -13.29 -0.07 0.35 16 7 N -0.47 -4.70 9.66 -11.50 -0.11 -4.81 16 8 C 0.10 0.93 10.93 -18.85 -0.21 0.73 16 9 C -0.30 -3.29 6.48 -37.10 -0.24 -3.53 16 10 C 0.59 7.77 7.79 -12.85 -0.10 7.67 16 11 O -0.54 -8.85 16.96 5.21 0.09 -8.76 16 12 N -0.71 -8.22 5.43 -61.62 -0.33 -8.56 16 13 C 0.09 1.16 5.34 -4.04 -0.02 1.13 16 14 C 0.09 1.31 3.09 -26.73 -0.08 1.23 16 15 H 0.11 1.63 8.14 -51.93 -0.42 1.20 16 16 O -0.55 -8.37 13.03 -35.23 -0.46 -8.83 16 17 C 0.13 2.42 5.90 -4.04 -0.02 2.40 16 18 N -0.73 -18.16 5.55 -59.91 -0.33 -18.49 16 19 C -0.25 -6.88 9.99 -15.06 -0.15 -7.03 16 20 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 21 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 22 N -0.93 -28.23 13.06 55.49 0.72 -27.51 16 23 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 S 0.23 2.08 21.35 -107.50 -2.30 -0.22 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.40 6.01 -51.93 -0.31 0.09 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.06 0.51 6.64 -51.93 -0.34 0.16 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.18 1.41 7.15 -52.48 -0.38 1.04 16 40 H 0.41 4.05 7.06 -40.82 -0.29 3.76 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.37 4.69 9.05 45.56 0.41 5.10 16 44 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.39 10.41 7.67 -40.82 -0.31 10.10 16 47 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 399.88 15.07 6.03 6.03 Total: -1.00 -34.11 399.88 -8.73 -42.84 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -6.69 Total: 10.69 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -0.33 Total: 0.24 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: -0.05 Total: -59.36 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.37 Total: -17.59 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -2.30 Total: -0.22 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.11 -8.73 -42.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667918867.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.071 kcal (2) G-P(sol) polarization free energy of solvation -34.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds