Wall clock time and date at job start Sat Apr 11 2020 06:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.46756 * 2 1 4 4 C 1.52998 * 109.47296 * 240.00181 * 2 1 3 5 5 C 1.50700 * 109.47055 * 119.99783 * 2 1 3 6 6 N 1.30950 * 122.90500 * 236.88501 * 5 2 1 7 7 C 1.29428 * 117.36248 * 180.30578 * 6 5 2 8 8 S 1.70948 * 110.39294 * 359.73404 * 7 6 5 9 9 C 1.35657 * 122.90290 * 56.69611 * 5 2 1 10 10 C 1.46682 * 126.13413 * 359.97438 * 9 5 2 11 11 O 1.21690 * 119.99611 * 87.45746 * 10 9 5 12 12 N 1.34767 * 119.99925 * 267.46271 * 10 9 5 13 13 C 1.46501 * 120.00335 * 4.43800 * 12 10 9 14 14 C 1.52995 * 109.47076 * 262.99485 * 13 12 10 15 15 O 1.42902 * 109.47125 * 65.00184 * 14 13 12 16 16 C 1.46508 * 119.99641 * 184.44187 * 12 10 9 17 17 C 1.52999 * 109.46932 * 269.99628 * 16 12 10 18 18 N 1.46498 * 109.47084 * 180.02562 * 17 16 12 19 19 C 1.36941 * 120.00136 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99700 * 359.97438 * 19 18 17 21 21 C 1.38812 * 120.00259 * 179.97438 * 19 18 17 22 22 N 1.31614 * 120.00109 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99833 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47120 * 89.99914 * 23 21 19 25 25 H 1.48493 * 109.47062 * 210.00007 * 23 21 19 26 26 H 1.48507 * 109.47156 * 330.00150 * 23 21 19 27 27 H 1.08998 * 109.47283 * 302.38462 * 1 2 3 28 28 H 1.09000 * 109.47448 * 62.38463 * 1 2 3 29 29 H 1.09004 * 109.46981 * 182.38531 * 1 2 3 30 30 H 1.09007 * 109.47144 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47430 * 299.99631 * 3 2 1 32 32 H 1.08996 * 109.47255 * 60.00068 * 3 2 1 33 33 H 1.09001 * 109.46880 * 305.32347 * 4 2 1 34 34 H 1.08989 * 109.47369 * 65.33029 * 4 2 1 35 35 H 1.08999 * 109.46863 * 185.33500 * 4 2 1 36 36 H 1.07999 * 124.80289 * 179.77076 * 7 6 5 37 37 H 1.08994 * 109.47122 * 22.99855 * 13 12 10 38 38 H 1.09006 * 109.47002 * 143.00011 * 13 12 10 39 39 H 1.09008 * 109.47221 * 184.99722 * 14 13 12 40 40 H 1.09003 * 109.47781 * 304.99979 * 14 13 12 41 41 H 0.96705 * 114.00221 * 180.02562 * 15 14 13 42 42 H 1.08994 * 109.47021 * 29.99973 * 16 12 10 43 43 H 1.09000 * 109.46718 * 150.00086 * 16 12 10 44 44 H 1.09007 * 109.47333 * 300.00264 * 17 16 12 45 45 H 1.08997 * 109.47117 * 59.99888 * 17 16 12 46 46 H 0.96998 * 120.00204 * 359.97438 * 18 17 16 47 47 H 0.96994 * 120.00139 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 7 2.8357 -0.1481 2.0984 7 6 3.2055 -0.8594 3.1144 8 16 2.4999 -2.4148 3.0412 9 6 1.6883 -1.9863 1.5368 10 6 0.8038 -2.8556 0.7533 11 8 1.2605 -3.5359 -0.1464 12 7 -0.5144 -2.9006 1.0299 13 6 -1.0804 -2.0107 2.0467 14 6 -1.1925 -2.7608 3.3755 15 8 0.1151 -3.0911 3.8478 16 6 -1.3814 -3.8396 0.3136 17 6 -1.9295 -3.1676 -0.9469 18 7 -2.7969 -4.1064 -1.6629 19 6 -3.4043 -3.7242 -2.8292 20 1 -3.2441 -2.7305 -3.2210 21 6 -4.2258 -4.6138 -3.5079 22 7 -4.8099 -4.2463 -4.6286 23 14 -4.5022 -6.3326 -2.8306 24 1 -5.6784 -6.3242 -1.9241 25 1 -4.7489 -7.2731 -3.9529 26 1 -3.2989 -6.7668 -2.0762 27 1 -0.3634 0.5504 0.8678 28 1 -0.3634 0.4763 -0.9106 29 1 -0.3633 -1.0268 0.0428 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6765 1.9563 0.8899 33 1 1.6009 -1.7176 -1.2982 34 1 1.7567 -0.1553 -2.1366 35 1 3.1258 -0.8046 -1.2027 36 1 3.8659 -0.5184 3.8980 37 1 -0.4319 -1.1438 2.1724 38 1 -2.0703 -1.6813 1.7308 39 1 -1.6946 -2.1289 4.1082 40 1 -1.7677 -3.6751 3.2293 41 1 0.1206 -3.5695 4.6882 42 1 -0.8075 -4.7231 0.0341 43 1 -2.2098 -4.1332 0.9582 44 1 -2.5033 -2.2840 -0.6675 45 1 -1.1011 -2.8739 -1.5915 46 1 -2.9405 -4.9989 -1.3112 47 1 -5.3836 -4.8680 -5.1030 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672686172.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:52 Heat of formation + Delta-G solvation = -12.246014 kcal Electronic energy + Delta-G solvation = -29543.838672 eV Core-core repulsion = 25661.839252 eV Total energy + Delta-G solvation = -3881.999420 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.97596 -39.34501 -37.32854 -36.05871 -35.85488 -34.48134 -31.74987 -30.51941 -29.72993 -27.86502 -27.38866 -27.19272 -25.66044 -23.76599 -23.19677 -21.92066 -21.35637 -20.27625 -18.50498 -18.02958 -17.79286 -17.48521 -17.01385 -16.23801 -15.42980 -15.32915 -14.82582 -14.72266 -14.43931 -14.23331 -14.08238 -13.89288 -13.66411 -13.49223 -13.40181 -13.18766 -12.71873 -12.46057 -12.31268 -12.17166 -12.06343 -11.77223 -11.62672 -11.50977 -11.18720 -11.10867 -10.96455 -10.91928 -10.77801 -10.58726 -10.38879 -10.18426 -10.12565 -9.63605 -9.59750 -9.26955 -8.90159 -8.76491 -8.65292 -7.25086 -5.76200 -3.12640 0.45656 1.09161 1.59680 2.61052 2.74120 3.00503 3.37414 3.40222 3.45735 4.02578 4.03051 4.42967 4.59428 4.77571 4.80297 4.83443 4.88816 4.99199 5.12889 5.24152 5.28063 5.31442 5.36939 5.47132 5.55939 5.59480 5.66310 5.71389 5.74216 5.82521 5.86043 5.88692 5.93851 6.00623 6.10228 6.28502 6.34609 6.34945 6.50387 6.58693 6.76933 7.27444 7.30157 7.62492 7.98332 8.10935 8.41863 9.20155 9.92259 10.11110 11.42114 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014988 B = 0.003620 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.704720 B = 7733.744433 C = 8760.129932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.003 3.997 3 C -0.125 4.125 4 C -0.149 4.149 5 C 0.113 3.887 6 N -0.464 5.464 7 C -0.021 4.021 8 S 0.254 5.746 9 C -0.269 4.269 10 C 0.607 3.393 11 O -0.513 6.513 12 N -0.592 5.592 13 C 0.101 3.899 14 C 0.054 3.946 15 O -0.561 6.561 16 C 0.104 3.896 17 C 0.146 3.854 18 N -0.753 5.753 19 C -0.242 4.242 20 H 0.090 0.910 21 C 0.005 3.995 22 N -0.933 5.933 23 Si 0.884 3.116 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.277 1.277 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.196 0.804 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.374 0.626 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.028 0.972 45 H 0.034 0.966 46 H 0.360 0.640 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.936 7.588 23.137 28.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.000 4.000 3 C -0.182 4.182 4 C -0.206 4.206 5 C -0.025 4.025 6 N -0.177 5.177 7 C -0.315 4.315 8 S 0.511 5.489 9 C -0.394 4.394 10 C 0.392 3.608 11 O -0.389 6.389 12 N -0.325 5.325 13 C -0.022 4.022 14 C -0.026 4.026 15 O -0.367 6.367 16 C -0.018 4.018 17 C 0.018 3.982 18 N -0.399 5.399 19 C -0.372 4.372 20 H 0.108 0.892 21 C -0.190 4.190 22 N -0.581 5.581 23 Si 0.714 3.286 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.203 1.203 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.213 0.787 37 H 0.109 0.891 38 H 0.117 0.883 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.222 0.778 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.045 0.955 45 H 0.052 0.948 46 H 0.193 0.807 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 14.593 7.307 22.592 27.870 hybrid contribution -0.811 -0.999 0.347 1.333 sum 13.782 6.307 22.939 27.494 Atomic orbital electron populations 1.22311 0.93239 1.03705 1.02412 1.19225 0.95626 0.95338 0.89801 1.21680 1.01388 0.93760 1.01400 1.22044 1.01184 1.01788 0.95627 1.20376 0.95695 0.89555 0.96868 1.65951 1.13009 1.36277 1.02507 1.28652 1.05342 0.96283 1.01213 1.83800 1.34540 1.14677 1.15903 1.25265 1.10685 1.00071 1.03333 1.16721 0.81276 0.80695 0.82093 1.90874 1.75200 1.42664 1.30126 1.47728 1.06965 1.39116 1.38674 1.21890 1.01033 0.93131 0.86181 1.22687 0.85235 0.99130 0.95520 1.86696 1.27457 1.79358 1.43193 1.21791 0.93377 0.92482 0.94168 1.20911 0.93402 0.92904 0.91002 1.42553 1.56888 1.12964 1.27497 1.19022 1.20874 0.99924 0.97405 0.89195 1.24661 0.99592 0.97851 0.96946 1.69696 1.35465 1.35628 1.17345 0.86547 0.77863 0.85903 0.78243 1.21089 1.21655 1.20279 0.92596 0.91243 0.90852 0.92273 0.92596 0.92450 0.90690 0.91735 0.92770 0.78693 0.89148 0.88280 0.92527 0.92987 0.77834 0.89635 0.90380 0.95459 0.94818 0.80707 0.93032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 7.00 37.15 0.26 -1.73 16 2 C 0.00 0.04 0.76 -155.66 -0.12 -0.08 16 3 C -0.12 -1.41 7.81 37.16 0.29 -1.12 16 4 C -0.15 -2.12 8.25 37.16 0.31 -1.81 16 5 C 0.11 1.48 5.14 -83.89 -0.43 1.05 16 6 N -0.46 -5.61 9.53 -11.53 -0.11 -5.72 16 7 C -0.02 -0.19 12.22 51.75 0.63 0.44 16 8 S 0.25 2.45 19.79 -107.50 -2.13 0.32 16 9 C -0.27 -3.55 3.83 -37.10 -0.14 -3.70 16 10 C 0.61 9.37 4.70 -12.86 -0.06 9.31 16 11 O -0.51 -9.94 15.06 5.20 0.08 -9.86 16 12 N -0.59 -7.98 1.46 -175.23 -0.25 -8.23 16 13 C 0.10 1.02 4.36 -4.04 -0.02 1.00 16 14 C 0.05 0.40 7.38 37.16 0.27 0.68 16 15 O -0.56 -4.09 9.37 -35.23 -0.33 -4.42 16 16 C 0.10 1.63 5.51 -4.04 -0.02 1.60 16 17 C 0.15 2.87 6.30 -4.04 -0.03 2.84 16 18 N -0.75 -18.08 5.41 -59.91 -0.32 -18.41 16 19 C -0.24 -6.95 10.47 -15.06 -0.16 -7.11 16 20 H 0.09 2.77 8.06 -52.48 -0.42 2.35 16 21 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 22 N -0.93 -29.54 13.97 55.49 0.78 -28.77 16 23 Si 0.88 22.15 27.74 -169.99 -4.71 17.43 16 24 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 26 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 27 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.07 1.01 3.37 -51.93 -0.17 0.84 16 30 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 1.27 5.31 -51.93 -0.28 0.99 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.20 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.09 0.94 4.83 -51.93 -0.25 0.69 16 38 H 0.10 0.91 8.12 -51.93 -0.42 0.49 16 39 H 0.06 0.32 8.14 -51.92 -0.42 -0.11 16 40 H 0.05 0.40 7.99 -51.93 -0.41 -0.01 16 41 H 0.37 1.24 9.12 45.56 0.42 1.65 16 42 H 0.09 1.48 7.49 -51.93 -0.39 1.09 16 43 H 0.08 1.05 7.92 -51.93 -0.41 0.64 16 44 H 0.03 0.52 8.14 -51.92 -0.42 0.10 16 45 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.36 8.35 5.53 -40.82 -0.23 8.12 16 47 H 0.26 7.80 8.31 -40.82 -0.34 7.47 16 LS Contribution 377.27 15.07 5.69 5.69 Total: -1.00 -35.96 377.27 -6.99 -42.95 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -6.36 Total: 7.58 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: 0.69 Total: 1.43 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: 0.09 Total: -61.13 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.25 Total: -14.27 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.71 Total: 17.43 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -2.13 Total: 0.32 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.96 -6.99 -42.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672686172.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.701 kcal (2) G-P(sol) polarization free energy of solvation -35.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds