Wall clock time and date at job start Sat Apr 11 2020 06:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 119.99995 * 2 1 4 4 C 1.52996 * 109.46884 * 90.00303 * 3 2 1 5 5 C 1.52999 * 109.47406 * 60.00101 * 4 3 2 6 6 C 1.52999 * 109.47307 * 299.99477 * 4 3 2 7 7 C 1.53004 * 109.46700 * 179.97438 * 4 3 2 8 8 N 1.46901 * 109.46916 * 179.97438 * 7 4 3 9 9 C 1.46905 * 110.99870 * 180.02562 * 8 7 4 10 10 C 1.50697 * 109.47066 * 180.02562 * 9 8 7 11 11 C 1.41382 * 126.80097 * 94.71291 * 10 9 8 12 12 C 1.35454 * 103.98569 * 179.89205 * 11 10 9 13 13 O 1.34042 * 106.44391 * 0.36301 * 12 11 10 14 14 N 1.20916 * 111.56818 * 359.75205 * 13 12 11 15 15 C 1.34780 * 119.99716 * 179.97438 * 2 1 3 16 16 O 1.21285 * 119.99658 * 179.97438 * 15 2 1 17 17 C 1.50694 * 120.00238 * 0.02562 * 15 2 1 18 18 S 1.81005 * 109.47233 * 179.97438 * 17 15 2 19 19 C 1.76204 * 99.99857 * 180.02562 * 18 17 15 20 20 H 1.07994 * 120.00342 * 0.02562 * 19 18 17 21 21 C 1.38802 * 119.99504 * 180.02562 * 19 18 17 22 22 N 1.31628 * 120.00191 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99606 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47127 * 89.99913 * 23 21 19 25 25 H 1.48503 * 109.46935 * 209.99560 * 23 21 19 26 26 H 1.48495 * 109.46975 * 329.99737 * 23 21 19 27 27 H 1.08996 * 109.47449 * 89.99787 * 1 2 3 28 28 H 1.09000 * 109.47129 * 210.00406 * 1 2 3 29 29 H 1.08997 * 109.46927 * 329.99946 * 1 2 3 30 30 H 1.08993 * 109.46962 * 329.99790 * 3 2 1 31 31 H 1.09005 * 109.46850 * 210.00543 * 3 2 1 32 32 H 1.09002 * 109.47301 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.47017 * 300.00116 * 5 4 3 34 34 H 1.09005 * 109.47249 * 59.99838 * 5 4 3 35 35 H 1.09001 * 109.46999 * 300.00605 * 6 4 3 36 36 H 1.09001 * 109.46478 * 60.00274 * 6 4 3 37 37 H 1.08993 * 109.47197 * 180.02562 * 6 4 3 38 38 H 1.09004 * 109.46889 * 60.00145 * 7 4 3 39 39 H 1.08995 * 109.47384 * 299.99786 * 7 4 3 40 40 H 1.00901 * 111.00067 * 303.95263 * 8 7 4 41 41 H 1.09001 * 109.46798 * 300.00327 * 9 8 7 42 42 H 1.08998 * 109.46961 * 60.00043 * 9 8 7 43 43 H 1.08004 * 128.00537 * 0.02562 * 11 10 9 44 44 H 1.08002 * 126.77602 * 180.10108 * 12 11 10 45 45 H 1.08999 * 109.47164 * 299.99591 * 17 15 2 46 46 H 1.09001 * 109.47550 * 59.99679 * 17 15 2 47 47 H 0.96997 * 119.99596 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 1.4425 5 6 3.2795 0.6440 2.1637 6 6 1.1157 1.8933 2.1638 7 6 3.2181 3.0350 1.4424 8 7 3.4625 3.4594 2.8274 9 6 4.1967 4.7312 2.8666 10 6 4.4289 5.1332 4.3003 11 6 5.5807 4.8716 5.0773 12 6 5.3003 5.4330 6.2777 13 8 4.0728 5.9610 6.1721 14 7 3.6065 5.7852 5.0704 15 6 2.1389 -1.1673 0.0005 16 8 3.3517 -1.1673 0.0001 17 6 1.3854 -2.4723 0.0005 18 16 2.5616 -3.8481 0.0005 19 6 1.4414 -5.2083 -0.0003 20 1 0.3762 -5.0306 -0.0010 21 6 1.9282 -6.5081 0.0001 22 7 3.2265 -6.7247 0.0004 23 14 0.7406 -7.9501 0.0000 24 1 0.4263 -8.3324 -1.4001 25 1 1.3618 -9.1029 0.7003 26 1 -0.5101 -7.5613 0.6997 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.6085 2.0283 -0.5138 31 1 3.1499 1.1384 -0.5139 32 1 3.4615 0.9588 3.1913 33 1 2.7345 -0.3000 2.1636 34 1 4.2319 0.5137 1.6498 35 1 0.5267 2.6530 1.6499 36 1 0.5707 0.9493 2.1637 37 1 1.2974 2.2083 3.1912 38 1 2.6293 3.7949 0.9285 39 1 4.1705 2.9043 0.9287 40 1 2.5978 3.5254 3.3433 41 1 5.1561 4.6124 2.3629 42 1 3.6146 5.5024 2.3623 43 1 6.4776 4.3476 4.7815 44 1 5.9379 5.4481 7.1493 45 1 0.7584 -2.5299 0.8903 46 1 0.7590 -2.5303 -0.8896 47 1 3.5666 -7.6331 0.0011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674818758.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:55 Heat of formation + Delta-G solvation = 30.121469 kcal Electronic energy + Delta-G solvation = -27156.066126 eV Core-core repulsion = 23275.903898 eV Total energy + Delta-G solvation = -3880.162228 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.25483 -40.00908 -37.97505 -35.98594 -34.58677 -32.97653 -32.41607 -31.89813 -29.54170 -27.93983 -27.44308 -26.79155 -25.69321 -25.37198 -23.82916 -23.44200 -21.32068 -19.62987 -18.70660 -18.10823 -17.86444 -17.62668 -16.57422 -16.41587 -15.90672 -15.66592 -15.47887 -14.80436 -14.77275 -14.43665 -14.02204 -13.83574 -13.63440 -13.52906 -13.20702 -12.93072 -12.78833 -12.75109 -12.53068 -12.46908 -12.08895 -12.02328 -11.63880 -11.50034 -11.36436 -11.06185 -11.02026 -10.96517 -10.78275 -10.72043 -10.65816 -10.51104 -9.99215 -9.78691 -9.27012 -9.05371 -8.75317 -8.42377 -8.20327 -6.47845 -6.20408 -3.90438 1.16797 1.86104 2.93278 2.98432 3.11795 3.22823 3.27198 3.31147 3.61978 3.73541 4.06957 4.19973 4.21739 4.66290 4.72409 4.80218 4.84130 4.93783 4.97935 5.01219 5.14326 5.15670 5.20873 5.28075 5.31635 5.37494 5.40883 5.45305 5.58834 5.62638 5.67672 5.70568 5.75088 5.87202 5.94007 5.99941 6.04568 6.16123 6.31401 6.38101 6.57198 6.71875 6.74408 6.99140 7.59087 7.61301 7.91391 8.36412 8.63432 9.24935 10.86967 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019507 B = 0.001960 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.063587 B =14283.782164 C =14908.368212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.620 5.620 3 C 0.129 3.871 4 C -0.077 4.077 5 C -0.122 4.122 6 C -0.147 4.147 7 C 0.073 3.927 8 N -0.678 5.678 9 C 0.137 3.863 10 C 0.021 3.979 11 C -0.216 4.216 12 C -0.063 4.063 13 O 0.098 5.902 14 N -0.365 5.365 15 C 0.533 3.467 16 O -0.510 6.510 17 C -0.151 4.151 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.031 0.969 39 H 0.079 0.921 40 H 0.344 0.656 41 H 0.096 0.904 42 H 0.047 0.953 43 H 0.173 0.827 44 H 0.217 0.783 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.765 26.323 7.446 27.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.356 5.356 3 C 0.005 3.995 4 C -0.079 4.079 5 C -0.179 4.179 6 C -0.204 4.204 7 C -0.056 4.056 8 N -0.312 5.312 9 C 0.008 3.992 10 C -0.139 4.139 11 C -0.238 4.238 12 C -0.144 4.144 13 O 0.031 5.969 14 N -0.069 5.069 15 C 0.321 3.679 16 O -0.384 6.384 17 C -0.301 4.301 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.744 3.256 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.049 0.951 39 H 0.097 0.903 40 H 0.164 0.836 41 H 0.114 0.886 42 H 0.065 0.935 43 H 0.190 0.810 44 H 0.233 0.767 45 H 0.105 0.895 46 H 0.105 0.895 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.509 26.309 7.328 27.316 hybrid contribution -2.104 -0.738 -0.259 2.245 sum -1.596 25.571 7.069 26.579 Atomic orbital electron populations 1.21885 0.80024 1.03201 1.01658 1.47750 1.06540 1.05571 1.75696 1.21367 0.97955 0.84895 0.95320 1.20987 0.95543 0.95120 0.96224 1.21690 0.99666 0.96772 0.99813 1.22006 0.96538 1.01866 0.99974 1.21941 1.00063 0.95222 0.88401 1.60466 1.27217 1.29008 1.14474 1.20180 1.00486 0.90776 0.87787 1.23547 0.91935 0.99416 0.98962 1.22767 1.01650 1.05881 0.93502 1.26047 0.88006 0.99054 1.01331 1.84828 1.26890 1.58810 1.26351 1.73838 1.22289 1.18409 0.92344 1.20245 0.87998 0.84462 0.75171 1.90696 1.13567 1.86701 1.47408 1.23559 1.04546 0.97474 1.04530 1.85376 1.08035 0.93291 1.96679 1.22862 0.94314 0.92272 1.58844 0.91016 1.24988 0.95657 0.98364 0.94593 1.70018 1.11716 1.21616 1.46917 0.86181 0.80299 0.80772 0.78329 1.20296 1.20756 1.19714 0.92919 0.90780 0.91087 0.91216 0.89700 0.92510 0.93036 0.92131 0.93241 0.91653 0.92635 0.95107 0.90296 0.83605 0.88578 0.93495 0.80968 0.76685 0.89471 0.89472 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.78 9.15 59.85 0.55 1.33 16 2 N -0.62 -8.42 2.40 -181.58 -0.44 -8.86 16 3 C 0.13 1.48 4.60 -4.04 -0.02 1.46 16 4 C -0.08 -0.82 0.67 -154.51 -0.10 -0.93 16 5 C -0.12 -1.73 6.98 37.16 0.26 -1.47 16 6 C -0.15 -1.39 6.90 37.16 0.26 -1.13 16 7 C 0.07 0.66 4.65 -3.82 -0.02 0.64 16 8 N -0.68 -6.25 5.70 -115.05 -0.66 -6.90 16 9 C 0.14 1.12 6.27 -4.97 -0.03 1.09 16 10 C 0.02 0.19 6.84 -82.10 -0.56 -0.37 16 11 C -0.22 -1.57 11.12 -39.38 -0.44 -2.01 16 12 C -0.06 -0.37 12.30 29.74 0.37 -0.01 16 13 O 0.10 0.87 11.20 17.17 0.19 1.06 16 14 N -0.36 -3.82 12.07 33.42 0.40 -3.41 16 15 C 0.53 9.87 6.10 -10.99 -0.07 9.81 16 16 O -0.51 -11.15 13.63 5.55 0.08 -11.07 16 17 C -0.15 -3.06 4.71 36.00 0.17 -2.89 16 18 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 19 C -0.53 -15.26 9.50 30.94 0.29 -14.96 16 20 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 21 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16 23 Si 0.92 21.47 29.55 -169.99 -5.02 16.44 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.80 6.44 -51.93 -0.33 0.46 16 29 H 0.07 0.58 6.05 -51.93 -0.31 0.26 16 30 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 31 H 0.08 1.13 7.42 -51.93 -0.39 0.74 16 32 H 0.06 0.78 7.60 -51.93 -0.39 0.38 16 33 H 0.05 0.86 6.14 -51.93 -0.32 0.54 16 34 H 0.06 0.97 7.73 -51.93 -0.40 0.57 16 35 H 0.05 0.39 8.08 -51.93 -0.42 -0.02 16 36 H 0.06 0.68 5.99 -51.93 -0.31 0.37 16 37 H 0.05 0.53 6.57 -51.93 -0.34 0.19 16 38 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.34 3.29 6.76 -39.29 -0.27 3.03 16 41 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.17 0.94 8.06 -52.48 -0.42 0.51 16 44 H 0.22 0.33 8.06 -52.49 -0.42 -0.09 16 45 H 0.09 1.66 7.40 -51.92 -0.38 1.27 16 46 H 0.09 1.66 8.11 -51.91 -0.42 1.24 16 47 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 390.25 15.07 5.88 5.88 Total: -1.00 -34.97 390.25 -7.70 -42.67 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -7.21 Total: 0.96 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: 0.56 Total: -7.44 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: 0.05 Total: -44.65 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.27 Total: -10.01 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.97 -7.70 -42.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674818758.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.791 kcal (2) G-P(sol) polarization free energy of solvation -34.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds