Wall clock time and date at job start Sat Apr 11 2020 06:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50702 * 120.00073 * 2 1 4 4 N 1.46498 * 109.46980 * 124.99616 * 3 2 1 5 5 C 1.46498 * 120.00282 * 270.00340 * 4 3 2 6 6 C 1.50703 * 109.46811 * 269.99968 * 5 4 3 7 7 H 1.07999 * 119.99851 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00126 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00140 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 119.99825 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47096 * 89.99979 * 10 8 6 12 12 H 1.48501 * 109.47227 * 209.99947 * 10 8 6 13 13 H 1.48499 * 109.47535 * 329.99812 * 10 8 6 14 14 C 1.34776 * 119.99933 * 89.99977 * 4 3 2 15 15 O 1.21589 * 120.00460 * 179.97438 * 14 4 3 16 16 N 1.34775 * 119.99805 * 359.97438 * 14 4 3 17 17 C 1.39514 * 120.00011 * 179.97438 * 16 14 4 18 18 C 1.36097 * 126.21192 * 0.02562 * 17 16 14 19 19 C 1.39768 * 107.82597 * 180.02562 * 18 17 16 20 20 N 1.30852 * 108.31803 * 359.71308 * 19 18 17 21 21 N 1.35240 * 126.21253 * 180.02562 * 17 16 14 22 22 C 1.46501 * 126.04827 * 359.97438 * 21 17 16 23 23 C 1.50707 * 109.46945 * 90.00633 * 22 21 17 24 24 C 1.38227 * 119.62024 * 124.97880 * 23 22 21 25 25 C 1.38627 * 119.15702 * 179.78495 * 24 23 22 26 26 C 1.38669 * 118.42389 * 0.47826 * 25 24 23 27 27 C 1.38186 * 119.16143 * 359.49762 * 26 25 24 28 28 N 1.31856 * 119.61172 * 304.99632 * 23 22 21 29 29 H 1.07994 * 120.00137 * 179.97438 * 1 2 3 30 30 H 1.07998 * 119.99668 * 0.02562 * 1 2 3 31 31 H 1.07998 * 119.99668 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.46931 * 4.99903 * 3 2 1 33 33 H 1.08995 * 109.46855 * 244.99548 * 3 2 1 34 34 H 1.08997 * 109.47149 * 29.99936 * 5 4 3 35 35 H 1.08998 * 109.47261 * 150.00188 * 5 4 3 36 36 H 0.97007 * 119.99608 * 180.02562 * 9 8 6 37 37 H 0.97001 * 120.00343 * 0.02562 * 16 14 4 38 38 H 1.07996 * 126.09120 * 0.02562 * 18 17 16 39 39 H 1.07994 * 125.84475 * 180.02562 * 19 18 17 40 40 H 1.08996 * 109.47325 * 330.00589 * 22 21 17 41 41 H 1.09007 * 109.47090 * 210.00048 * 22 21 17 42 42 H 1.07998 * 120.41916 * 359.97438 * 24 23 22 43 43 H 1.08008 * 120.78688 * 180.22921 * 25 24 23 44 44 H 1.08002 * 120.42244 * 179.78279 * 26 25 24 45 45 H 1.07996 * 119.61757 * 180.25243 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.5589 1.8649 2.4249 6 6 2.8443 3.3436 2.4804 7 1 3.3041 3.8368 1.6368 8 6 2.5184 4.0667 3.6082 9 7 2.7680 5.3571 3.6568 10 14 1.7238 3.2134 5.0676 11 1 2.7798 2.7232 5.9895 12 1 0.8469 4.1734 5.7850 13 1 0.9131 2.0652 4.5885 14 6 4.2497 0.8661 0.9825 15 8 5.0219 0.8887 1.9214 16 7 4.6497 0.3752 -0.2072 17 6 5.9499 -0.1064 -0.3616 18 6 6.9136 -0.1415 0.5987 19 6 8.0638 -0.6962 0.0305 20 7 7.8051 -0.9900 -1.2181 21 7 6.4814 -0.6232 -1.4927 22 6 5.7928 -0.7777 -2.7765 23 6 5.9903 0.4654 -3.6053 24 6 6.5199 0.3612 -4.8778 25 6 6.6933 1.5104 -5.6334 26 6 6.3353 2.7280 -5.0747 27 6 5.8114 2.7541 -3.7963 28 7 5.6562 1.6400 -3.1079 29 1 -0.5400 -0.9352 -0.0004 30 1 -0.5399 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3587 2.1316 0.0895 33 1 2.6214 1.4025 -0.9313 34 1 1.4888 1.6966 2.5459 35 1 3.0989 1.3603 3.2260 36 1 2.5390 5.8657 4.4505 37 1 4.0338 0.3575 -0.9564 38 1 6.8085 0.1987 1.6183 39 1 9.0036 -0.8596 0.5368 40 1 4.7282 -0.9324 -2.6015 41 1 6.2024 -1.6372 -3.3074 42 1 6.7923 -0.6037 -5.2794 43 1 7.1014 1.4590 -6.6322 44 1 6.4599 3.6438 -5.6334 45 1 5.5263 3.6979 -3.3555 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675928154.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:57 Heat of formation + Delta-G solvation = 137.504686 kcal Electronic energy + Delta-G solvation = -29585.550390 eV Core-core repulsion = 25606.893447 eV Total energy + Delta-G solvation = -3978.656943 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.31659 -40.29505 -39.42827 -35.98115 -34.70803 -34.09049 -33.13800 -32.64896 -32.14856 -30.88029 -29.03051 -27.74891 -26.79735 -25.63829 -23.81805 -22.99571 -22.63591 -21.25652 -20.44075 -20.03285 -18.96296 -18.21611 -17.22166 -16.94954 -16.81714 -16.50276 -16.01540 -15.60560 -15.13730 -14.91370 -14.50213 -14.39295 -14.27185 -13.96599 -13.61924 -13.37469 -13.30478 -13.15148 -13.02631 -12.94136 -12.35265 -12.22064 -12.02668 -11.90478 -11.64503 -11.33560 -10.98105 -10.59568 -10.51708 -10.41148 -10.16933 -10.13066 -9.74892 -9.57331 -9.37932 -9.34404 -9.26189 -8.76901 -8.56758 -7.97349 -7.51300 -6.06577 -4.05328 0.73058 1.00128 2.10038 2.22700 2.38592 3.19798 3.21789 3.31664 3.37392 3.39841 3.55685 3.85167 3.96329 4.26712 4.31845 4.41516 4.58235 4.61004 4.78404 4.85541 4.98879 5.05094 5.23291 5.24490 5.25744 5.27435 5.41971 5.43467 5.65108 5.77570 5.86239 5.86994 5.92926 6.04901 6.32800 6.38012 6.42056 6.62557 6.64732 6.76506 6.87393 7.06144 7.23309 7.38453 7.44843 7.62258 7.72532 7.99556 8.41464 8.49077 8.97033 9.10540 9.53418 11.06778 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011470 B = 0.003381 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.542204 B = 8280.501793 C = 8621.110461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.175 4.175 3 C 0.136 3.864 4 N -0.594 5.594 5 C 0.233 3.767 6 C -0.529 4.529 7 H 0.075 0.925 8 C 0.074 3.926 9 N -0.897 5.897 10 Si 0.874 3.126 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.711 3.289 15 O -0.552 6.552 16 N -0.660 5.660 17 C 0.358 3.642 18 C -0.292 4.292 19 C 0.064 3.936 20 N -0.310 5.310 21 N -0.389 5.389 22 C 0.189 3.811 23 C 0.100 3.900 24 C -0.154 4.154 25 C -0.076 4.076 26 C -0.168 4.168 27 C 0.108 3.892 28 N -0.465 5.465 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.033 0.967 35 H 0.039 0.961 36 H 0.264 0.736 37 H 0.402 0.598 38 H 0.175 0.825 39 H 0.182 0.818 40 H 0.099 0.901 41 H 0.113 0.887 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.425 -12.158 -19.673 23.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.195 4.195 3 C 0.012 3.988 4 N -0.328 5.328 5 C 0.113 3.887 6 C -0.568 4.568 7 H 0.093 0.907 8 C -0.129 4.129 9 N -0.535 5.535 10 Si 0.701 3.299 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.412 3.588 15 O -0.426 6.426 16 N -0.311 5.311 17 C 0.137 3.863 18 C -0.324 4.324 19 C -0.122 4.122 20 N -0.132 5.132 21 N -0.178 5.178 22 C 0.066 3.934 23 C -0.039 4.039 24 C -0.175 4.175 25 C -0.102 4.102 26 C -0.188 4.188 27 C -0.050 4.050 28 N -0.174 5.174 29 H 0.114 0.886 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.114 0.886 33 H 0.088 0.912 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.238 0.762 38 H 0.192 0.808 39 H 0.198 0.802 40 H 0.117 0.883 41 H 0.131 0.869 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.154 0.846 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 2.921 -12.373 -19.109 22.952 hybrid contribution -0.731 0.217 0.070 0.766 sum 2.189 -12.156 -19.039 22.695 Atomic orbital electron populations 1.23857 0.95761 1.01950 0.99906 1.23472 0.96580 0.98919 1.00496 1.20578 0.93251 0.95737 0.89276 1.47146 1.08764 1.63219 1.13693 1.19629 0.94788 0.95039 0.79257 1.21345 1.41102 0.91124 1.03195 0.90657 1.24825 0.95293 0.94702 0.98045 1.69900 1.47763 1.06625 1.29240 0.86884 0.79889 0.79651 0.83464 1.19820 1.21133 1.19028 1.15560 0.83089 0.78519 0.81638 1.90839 1.52055 1.60813 1.38932 1.42179 1.10291 1.64588 1.14037 1.17622 0.85623 0.95290 0.87747 1.21684 0.91845 1.16131 1.02719 1.23707 0.99382 0.97452 0.91653 1.77362 0.91711 1.26556 1.17525 1.48221 1.10094 1.52240 1.07205 1.20304 0.97351 0.94457 0.81283 1.21460 0.96105 0.93815 0.92526 1.21897 1.00396 1.00016 0.95154 1.21577 0.96457 0.92296 0.99902 1.22226 1.00309 0.99031 0.97276 1.22855 0.94304 0.96669 0.91141 1.67459 1.15548 0.98195 1.36193 0.88637 0.88073 0.87789 0.88632 0.91171 0.94932 0.94269 0.92586 0.76181 0.80763 0.80151 0.88287 0.86899 0.84568 0.84654 0.84577 0.82321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.04 14.32 29.01 0.42 -1.63 16 2 C -0.18 -2.27 9.85 -36.03 -0.35 -2.62 16 3 C 0.14 2.10 5.61 -5.19 -0.03 2.07 16 4 N -0.59 -12.09 2.44 -182.19 -0.44 -12.54 16 5 C 0.23 5.62 4.23 -5.19 -0.02 5.60 16 6 C -0.53 -15.03 9.94 -34.44 -0.34 -15.37 16 7 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 8 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 9 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 10 Si 0.87 21.41 27.47 -169.99 -4.67 16.74 16 11 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 14 C 0.71 14.92 8.24 -86.92 -0.72 14.21 16 15 O -0.55 -13.67 13.05 5.29 0.07 -13.60 16 16 N -0.66 -11.15 5.28 -15.85 -0.08 -11.23 16 17 C 0.36 6.18 7.66 -153.14 -1.17 5.01 16 18 C -0.29 -5.36 9.65 -39.78 -0.38 -5.75 16 19 C 0.06 0.99 12.01 -17.40 -0.21 0.78 16 20 N -0.31 -4.86 12.57 30.60 0.38 -4.47 16 21 N -0.39 -5.73 3.56 -61.56 -0.22 -5.95 16 22 C 0.19 1.99 6.63 -5.19 -0.03 1.95 16 23 C 0.10 1.12 6.39 -82.58 -0.53 0.59 16 24 C -0.15 -1.34 9.71 -39.44 -0.38 -1.72 16 25 C -0.08 -0.60 10.18 -39.28 -0.40 -1.00 16 26 C -0.17 -1.45 10.11 -39.44 -0.40 -1.85 16 27 C 0.11 1.21 11.18 -17.55 -0.20 1.02 16 28 N -0.46 -6.15 10.22 -9.47 -0.10 -6.25 16 29 H 0.10 0.94 8.06 -52.49 -0.42 0.51 16 30 H 0.10 1.14 7.84 -52.49 -0.41 0.73 16 31 H 0.10 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.10 1.53 7.72 -51.93 -0.40 1.13 16 33 H 0.07 0.95 6.36 -51.93 -0.33 0.62 16 34 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 35 H 0.04 1.01 6.85 -51.93 -0.36 0.65 16 36 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.40 5.66 5.70 -40.82 -0.23 5.43 16 38 H 0.18 3.62 5.82 -52.49 -0.31 3.31 16 39 H 0.18 2.15 8.06 -52.49 -0.42 1.72 16 40 H 0.10 0.86 7.50 -51.93 -0.39 0.47 16 41 H 0.11 0.89 7.87 -51.92 -0.41 0.48 16 42 H 0.14 0.82 7.95 -52.49 -0.42 0.40 16 43 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16 44 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 45 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 385.94 15.07 5.82 5.82 Total: -1.00 -36.64 385.94 -9.07 -45.71 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -5.75 Total: 9.20 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: -4.85 Total: 3.33 kcal Atomic # 7 Polarization: -67.52 SS G_CDS: 0.31 Total: -67.20 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.07 Total: -13.60 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.64 -9.07 -45.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675928154.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.218 kcal (2) G-P(sol) polarization free energy of solvation -36.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds