Wall clock time and date at job start Sat Apr 11 2020 06:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46993 * 2 1 4 4 C 1.50699 * 109.46681 * 119.99567 * 2 1 3 5 5 N 1.28655 * 124.71623 * 120.00422 * 4 2 1 6 6 C 1.33562 * 115.76398 * 179.97438 * 5 4 2 7 7 C 1.47268 * 123.13932 * 179.97438 * 6 5 4 8 8 O 1.21631 * 119.99885 * 179.97438 * 7 6 5 9 9 N 1.34774 * 119.99818 * 0.02562 * 7 6 5 10 10 C 1.46506 * 119.99815 * 179.71973 * 9 7 6 11 11 C 1.53003 * 109.47198 * 180.27415 * 10 9 7 12 12 O 1.42895 * 109.47035 * 64.99903 * 11 10 9 13 13 C 1.42897 * 114.00058 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.47514 * 180.02562 * 13 12 11 15 15 N 1.46509 * 109.46967 * 65.00052 * 14 13 12 16 16 C 1.46498 * 119.99894 * 270.00355 * 15 14 13 17 17 C 1.36938 * 119.99551 * 90.00042 * 15 14 13 18 18 H 1.08001 * 119.99867 * 22.71434 * 17 15 14 19 19 C 1.38808 * 119.99602 * 202.70665 * 17 15 14 20 20 N 1.31619 * 119.99975 * 11.50955 * 19 17 15 21 21 Si 1.86796 * 119.99831 * 191.50827 * 19 17 15 22 22 H 1.48498 * 109.47361 * 90.00354 * 21 19 17 23 23 H 1.48508 * 109.47537 * 210.00175 * 21 19 17 24 24 H 1.48504 * 109.47247 * 330.00119 * 21 19 17 25 25 C 1.35205 * 113.71870 * 0.24645 * 6 5 4 26 26 S 1.70768 * 124.72494 * 299.99806 * 4 2 1 27 27 H 1.08994 * 109.47329 * 300.00401 * 1 2 3 28 28 H 1.08998 * 109.46985 * 60.00041 * 1 2 3 29 29 H 1.09005 * 109.47064 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47329 * 239.99599 * 2 1 3 31 31 H 1.09004 * 109.46780 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.46929 * 299.99351 * 3 2 1 33 33 H 1.08998 * 109.47154 * 60.00097 * 3 2 1 34 34 H 0.97003 * 120.00614 * 359.97438 * 9 7 6 35 35 H 1.09000 * 109.47167 * 300.27331 * 10 9 7 36 36 H 1.08997 * 109.46688 * 60.27360 * 10 9 7 37 37 H 1.08997 * 109.47320 * 185.00284 * 11 10 9 38 38 H 1.09002 * 109.46713 * 304.99934 * 11 10 9 39 39 H 1.08995 * 109.47502 * 300.00344 * 13 12 11 40 40 H 1.09007 * 109.47106 * 60.00507 * 13 12 11 41 41 H 1.08994 * 109.47685 * 185.00317 * 14 13 12 42 42 H 1.09007 * 109.47419 * 305.00665 * 14 13 12 43 43 H 1.08994 * 109.47020 * 93.92079 * 16 15 14 44 44 H 1.09004 * 109.47046 * 213.91667 * 16 15 14 45 45 H 1.08994 * 109.47458 * 333.91340 * 16 15 14 46 46 H 0.97009 * 119.99384 * 179.97438 * 20 19 17 47 47 H 1.07998 * 125.58646 * 179.75716 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 2.7750 -1.7607 1.2184 6 6 3.1172 -2.2437 2.4157 7 6 3.9610 -3.4379 2.5909 8 8 4.2381 -3.8280 3.7091 9 7 4.4271 -4.0978 1.5121 10 6 5.2717 -5.2822 1.6864 11 6 5.6673 -5.8328 0.3148 12 8 6.4884 -4.8794 -0.3624 13 6 6.9157 -5.2980 -1.6602 14 6 7.7839 -4.2060 -2.2882 15 7 9.0135 -4.0501 -1.5070 16 6 9.0572 -3.1014 -0.3916 17 6 10.1217 -4.7913 -1.8194 18 1 10.2360 -5.1993 -2.8128 19 6 11.0983 -5.0180 -0.8593 20 7 10.8630 -4.7219 0.4014 21 14 12.7463 -5.7434 -1.3565 22 1 13.6875 -4.6464 -1.6969 23 1 13.2982 -6.5371 -0.2292 24 1 12.5634 -6.6234 -2.5386 25 6 2.6117 -1.5374 3.4518 26 16 1.6948 -0.2330 2.8351 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1301 1.4425 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 4.2065 -3.7865 0.6203 35 1 6.1695 -5.0098 2.2413 36 1 4.7204 -6.0434 2.2383 37 1 6.2206 -6.7631 0.4426 38 1 4.7694 -6.0220 -0.2734 39 1 7.4951 -6.2171 -1.5730 40 1 6.0439 -5.4764 -2.2897 41 1 8.0364 -4.4858 -3.3110 42 1 7.2354 -3.2641 -2.2941 43 1 8.8220 -3.6213 0.5371 44 1 10.0548 -2.6676 -0.3224 45 1 8.3275 -2.3093 -0.5594 46 1 11.5454 -4.8807 1.0724 47 1 2.7637 -1.7597 4.4976 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676131112.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:59 Heat of formation + Delta-G solvation = -24.464863 kcal Electronic energy + Delta-G solvation = -27339.788837 eV Core-core repulsion = 23457.259568 eV Total energy + Delta-G solvation = -3882.529269 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.61416 -38.87601 -37.54784 -35.85984 -35.38441 -34.36476 -31.43453 -30.39678 -29.56305 -27.85274 -27.62645 -25.89829 -25.63872 -23.63190 -22.94436 -21.87906 -20.94069 -20.29733 -19.95067 -18.55778 -16.87828 -16.72771 -16.17308 -16.06935 -15.80792 -15.46028 -15.06760 -14.71943 -14.51161 -14.44122 -14.07061 -13.69600 -13.47667 -13.35898 -13.26255 -13.04262 -12.66665 -12.44167 -12.27810 -12.10082 -12.08688 -11.64863 -11.49882 -11.38128 -11.33799 -10.86698 -10.80258 -10.73828 -10.46636 -10.16402 -10.04269 -9.99946 -9.88943 -9.86678 -9.75771 -9.19378 -8.96085 -8.87229 -8.44550 -6.62624 -5.61116 -3.07640 0.30585 0.97055 1.37774 1.83710 3.23058 3.36741 3.42561 3.48344 3.49987 3.66074 4.21589 4.39491 4.57428 4.58177 4.64501 4.92914 5.02254 5.09783 5.15377 5.21606 5.35056 5.35866 5.39865 5.49724 5.54018 5.61772 5.69028 5.71712 5.76347 5.78756 5.80147 6.05410 6.14872 6.25357 6.28828 6.50508 6.59471 6.82167 7.01429 7.17904 7.56312 7.64647 7.84358 7.87455 8.03277 8.23738 8.50454 9.34890 9.98781 10.49609 11.42829 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014688 B = 0.002398 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.850380 B =11675.429756 C =12299.459212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.021 4.021 3 C -0.149 4.149 4 C 0.035 3.965 5 N -0.440 5.440 6 C 0.015 3.985 7 C 0.591 3.409 8 O -0.540 6.540 9 N -0.699 5.699 10 C 0.123 3.877 11 C 0.051 3.949 12 O -0.366 6.366 13 C 0.043 3.957 14 C 0.153 3.847 15 N -0.596 5.596 16 C 0.175 3.825 17 C -0.257 4.257 18 H 0.066 0.934 19 C 0.002 3.998 20 N -0.902 5.902 21 Si 0.902 3.098 22 H -0.289 1.289 23 H -0.292 1.292 24 H -0.281 1.281 25 C -0.228 4.228 26 S 0.204 5.796 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.413 0.587 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.044 0.956 39 H 0.048 0.952 40 H 0.025 0.975 41 H 0.058 0.942 42 H 0.043 0.957 43 H 0.032 0.968 44 H 0.037 0.963 45 H -0.008 1.008 46 H 0.251 0.749 47 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.923 9.714 1.339 26.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.043 4.043 3 C -0.208 4.208 4 C -0.245 4.245 5 N -0.155 5.155 6 C -0.119 4.119 7 C 0.374 3.626 8 O -0.418 6.418 9 N -0.349 5.349 10 C 0.000 4.000 11 C -0.027 4.027 12 O -0.285 6.285 13 C -0.036 4.036 14 C 0.025 3.975 15 N -0.319 5.319 16 C 0.031 3.969 17 C -0.386 4.386 18 H 0.084 0.916 19 C -0.197 4.197 20 N -0.547 5.547 21 Si 0.733 3.267 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.206 1.206 25 C -0.370 4.370 26 S 0.461 5.539 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.123 0.877 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.249 0.751 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.043 0.957 41 H 0.076 0.924 42 H 0.062 0.938 43 H 0.050 0.950 44 H 0.055 0.945 45 H 0.011 0.989 46 H 0.061 0.939 47 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -24.902 10.128 2.296 26.981 hybrid contribution 1.449 -1.588 -0.460 2.199 sum -23.453 8.540 1.836 25.027 Atomic orbital electron populations 1.21940 0.93109 1.02772 1.02776 1.19856 0.96050 0.95557 0.92813 1.21950 1.02218 0.93849 1.02733 1.27199 1.00647 0.96928 0.99768 1.66942 1.12054 1.10462 1.26042 1.20443 1.03950 1.00224 0.87318 1.17035 0.79261 0.81482 0.84806 1.90814 1.59341 1.67412 1.24215 1.45731 1.50479 1.29243 1.09494 1.21476 0.94888 0.86854 0.96798 1.22594 0.94226 0.93473 0.92382 1.88024 1.68180 1.41350 1.30898 1.23504 0.96012 1.01100 0.83033 1.20890 0.87350 0.95115 0.94175 1.43884 1.07443 1.44816 1.35725 1.20678 0.96799 0.89085 0.90365 1.19205 0.96802 1.27739 0.94889 0.91582 1.25039 0.99465 1.00186 0.94999 1.70107 1.32929 1.52056 0.99598 0.86295 0.84503 0.78669 0.77268 1.21588 1.21834 1.20633 1.26608 1.04022 1.00397 1.06013 1.82705 1.45409 1.25566 1.00171 0.92233 0.90980 0.91937 0.87720 0.91651 0.90954 0.92245 0.75146 0.89848 0.90326 0.91943 0.93773 0.93332 0.95727 0.92407 0.93839 0.94994 0.94469 0.98903 0.93908 0.79361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.09 37.16 0.34 -0.42 16 2 C -0.02 -0.15 3.34 -91.77 -0.31 -0.45 16 3 C -0.15 -0.88 9.09 37.16 0.34 -0.54 16 4 C 0.03 0.34 6.00 -13.61 -0.08 0.26 16 5 N -0.44 -5.62 10.12 -8.51 -0.09 -5.71 16 6 C 0.02 0.21 6.70 -84.52 -0.57 -0.35 16 7 C 0.59 9.59 7.80 -12.59 -0.10 9.49 16 8 O -0.54 -10.11 16.71 5.25 0.09 -10.02 16 9 N -0.70 -10.73 5.50 -61.43 -0.34 -11.06 16 10 C 0.12 1.90 6.06 -4.04 -0.02 1.88 16 11 C 0.05 0.79 6.07 37.16 0.23 1.02 16 12 O -0.37 -7.21 9.84 -35.23 -0.35 -7.55 16 13 C 0.04 0.83 6.28 37.16 0.23 1.06 16 14 C 0.15 3.23 6.12 -4.04 -0.02 3.21 16 15 N -0.60 -15.64 2.89 -181.12 -0.52 -16.16 16 16 C 0.18 4.67 8.61 59.85 0.52 5.19 16 17 C -0.26 -7.22 9.67 -15.06 -0.15 -7.37 16 18 H 0.07 1.80 7.85 -52.49 -0.41 1.39 16 19 C 0.00 0.05 5.12 -17.43 -0.09 -0.04 16 20 N -0.90 -27.26 10.62 55.49 0.59 -26.67 16 21 Si 0.90 22.35 29.57 -169.99 -5.03 17.33 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 C -0.23 -2.58 10.62 29.65 0.31 -2.26 16 26 S 0.20 1.65 22.22 -107.50 -2.39 -0.74 16 27 H 0.06 0.26 7.91 -51.93 -0.41 -0.15 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.30 7.91 -51.93 -0.41 -0.11 16 34 H 0.41 6.04 7.99 -40.82 -0.33 5.72 16 35 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 1.14 8.03 -51.93 -0.42 0.72 16 42 H 0.04 0.87 7.87 -51.93 -0.41 0.46 16 43 H 0.03 0.93 7.43 -51.93 -0.39 0.54 16 44 H 0.04 1.05 7.20 -51.93 -0.37 0.68 16 45 H -0.01 -0.19 7.85 -51.93 -0.41 -0.59 16 46 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 47 H 0.19 1.93 8.03 -52.49 -0.42 1.51 16 LS Contribution 405.29 15.07 6.11 6.11 Total: -1.00 -34.44 405.29 -9.06 -43.50 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -7.76 Total: 0.32 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: 0.63 Total: 10.66 kcal Atomic # 7 Polarization: -59.24 SS G_CDS: -0.36 Total: -59.60 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.26 Total: -17.57 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.03 Total: 17.33 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -2.39 Total: -0.74 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.44 -9.06 -43.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676131112.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.035 kcal (2) G-P(sol) polarization free energy of solvation -34.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds