Wall clock time and date at job start Sat Apr 11 2020 06:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50710 * 109.46684 * 2 1 4 4 N 1.29427 * 124.80117 * 90.02527 * 3 2 1 5 5 C 1.30936 * 117.36414 * 179.97438 * 4 3 2 6 6 C 1.50698 * 122.90568 * 180.02562 * 5 4 3 7 7 C 1.35668 * 114.19123 * 0.02562 * 5 4 3 8 8 C 1.46679 * 126.13028 * 179.97438 * 7 5 4 9 9 O 1.21688 * 120.00077 * 359.97438 * 8 7 5 10 10 N 1.34773 * 120.00151 * 179.97438 * 8 7 5 11 11 C 1.46492 * 120.00386 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47659 * 180.02562 * 11 10 8 13 13 O 1.42899 * 109.47058 * 64.99174 * 12 11 10 14 14 C 1.42909 * 114.00015 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.46880 * 180.02562 * 14 13 12 16 16 N 1.46504 * 109.46960 * 65.00722 * 15 14 13 17 17 C 1.46503 * 119.99767 * 269.99228 * 16 15 14 18 18 C 1.36933 * 120.00105 * 89.99468 * 16 15 14 19 19 H 1.08002 * 120.00323 * 20.36964 * 18 16 15 20 20 C 1.38816 * 120.00157 * 200.36125 * 18 16 15 21 21 N 1.31619 * 119.99619 * 14.99710 * 20 18 16 22 22 Si 1.86793 * 120.00340 * 194.99795 * 20 18 16 23 23 H 1.48500 * 109.47472 * 85.00407 * 22 20 18 24 24 H 1.48502 * 109.46976 * 205.00335 * 22 20 18 25 25 H 1.48500 * 109.46970 * 325.00191 * 22 20 18 26 26 S 1.70951 * 124.80579 * 270.29561 * 3 2 1 27 27 H 1.08996 * 109.46982 * 59.99967 * 1 2 3 28 28 H 1.08995 * 109.46561 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.46955 * 299.99737 * 1 2 3 30 30 H 1.08994 * 109.47278 * 240.00687 * 2 1 3 31 31 H 1.08996 * 109.46982 * 120.00033 * 2 1 3 32 32 H 1.09001 * 109.47110 * 270.00069 * 6 5 4 33 33 H 1.08994 * 109.47209 * 30.00404 * 6 5 4 34 34 H 1.09005 * 109.47499 * 150.00370 * 6 5 4 35 35 H 0.97005 * 119.99826 * 359.97438 * 10 8 7 36 36 H 1.09009 * 109.47099 * 299.99695 * 11 10 8 37 37 H 1.08998 * 109.47448 * 59.99586 * 11 10 8 38 38 H 1.08990 * 109.47601 * 185.00059 * 12 11 10 39 39 H 1.09003 * 109.47078 * 305.00016 * 12 11 10 40 40 H 1.08998 * 109.46965 * 300.00953 * 14 13 12 41 41 H 1.08999 * 109.46808 * 60.00720 * 14 13 12 42 42 H 1.08999 * 109.47075 * 185.00071 * 15 14 13 43 43 H 1.08996 * 109.47605 * 305.00463 * 15 14 13 44 44 H 1.09003 * 109.46599 * 95.10687 * 17 16 15 45 45 H 1.08996 * 109.47082 * 215.10467 * 17 16 15 46 46 H 1.09004 * 109.47110 * 335.10911 * 17 16 15 47 47 H 0.96997 * 120.00174 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2789 2.1172 1.0628 5 6 2.7120 3.3412 0.8933 6 6 3.0382 4.2606 2.0419 7 6 2.8418 3.7102 -0.4058 8 6 3.3027 5.0148 -0.8924 9 8 3.6104 5.8857 -0.1001 10 7 3.3853 5.2492 -2.2170 11 6 3.8462 6.5520 -2.7031 12 6 3.8462 6.5548 -4.2331 13 8 2.5052 6.4261 -4.7097 14 6 2.3930 6.4173 -6.1344 15 6 0.9215 6.2766 -6.5291 16 7 0.1824 7.4627 -6.0895 17 6 -0.4312 7.4923 -4.7595 18 6 0.0652 8.5438 -6.9218 19 1 0.2122 8.4251 -7.9852 20 6 -0.2430 9.7922 -6.3989 21 7 -0.1338 10.0089 -5.1053 22 14 -0.8126 11.1644 -7.5310 23 1 -2.2773 11.0515 -7.7477 24 1 -0.5037 12.4780 -6.9109 25 1 -0.1094 11.0547 -8.8344 26 16 2.3507 2.3434 -1.4036 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.1481 4.8252 2.3195 33 1 3.3753 3.6713 2.8946 34 1 3.8272 4.9505 1.7424 35 1 3.1404 4.5549 -2.8486 36 1 3.1783 7.3327 -2.3388 37 1 4.8564 6.7391 -2.3391 38 1 4.2722 7.4905 -4.5948 39 1 4.4431 5.7189 -4.5980 40 1 2.7890 7.3500 -6.5358 41 1 2.9596 5.5783 -6.5382 42 1 0.8434 6.1806 -7.6120 43 1 0.5011 5.3900 -6.0544 44 1 0.2472 7.9768 -4.0572 45 1 -1.3672 8.0490 -4.8035 46 1 -0.6298 6.4729 -4.4283 47 1 -0.3487 10.8814 -4.7398 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676131128.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:02 Heat of formation + Delta-G solvation = -22.167216 kcal Electronic energy + Delta-G solvation = -27322.881369 eV Core-core repulsion = 23440.451733 eV Total energy + Delta-G solvation = -3882.429636 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.54299 -39.26578 -37.64140 -35.47989 -34.64949 -34.44312 -31.52738 -31.12801 -30.03201 -28.37816 -27.45592 -25.78224 -25.69933 -23.13411 -22.90005 -22.21363 -21.45682 -20.35649 -19.68077 -18.16314 -17.07237 -16.86225 -16.19797 -16.14719 -15.64657 -15.33367 -14.98744 -14.72086 -14.62364 -14.30711 -14.02121 -13.79817 -13.64321 -13.36468 -13.28177 -13.10457 -12.66822 -12.57898 -12.22456 -12.16904 -12.04912 -11.59581 -11.57428 -11.52577 -11.40320 -10.92233 -10.86919 -10.76325 -10.51676 -10.19625 -10.07582 -9.92238 -9.85597 -9.77640 -9.72896 -9.15024 -9.05123 -8.88678 -8.47598 -6.69843 -5.64986 -3.09277 0.02986 0.93416 1.34613 2.24727 3.02819 3.11932 3.40719 3.46762 3.48119 3.66898 4.12020 4.46153 4.54876 4.69626 4.71959 4.77117 4.91767 5.12320 5.16687 5.25308 5.39591 5.45380 5.49415 5.54808 5.56639 5.61453 5.64025 5.68139 5.73695 5.79425 5.97139 6.06164 6.16878 6.19036 6.21433 6.38754 6.52711 6.75323 6.94114 7.32095 7.45461 7.50910 7.75371 7.83136 7.97311 8.08216 8.45181 9.30365 9.94928 10.44524 11.39045 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014511 B = 0.002473 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.151531 B =11317.477116 C =11878.194634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.050 4.050 3 C 0.064 3.936 4 N -0.477 5.477 5 C 0.149 3.851 6 C -0.089 4.089 7 C -0.297 4.297 8 C 0.596 3.404 9 O -0.526 6.526 10 N -0.713 5.713 11 C 0.125 3.875 12 C 0.050 3.950 13 O -0.367 6.367 14 C 0.042 3.958 15 C 0.153 3.847 16 N -0.596 5.596 17 C 0.174 3.826 18 C -0.258 4.258 19 H 0.067 0.933 20 C 0.001 3.999 21 N -0.901 5.901 22 Si 0.902 3.098 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.281 1.281 26 S 0.164 5.836 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.400 0.600 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.044 0.956 40 H 0.049 0.951 41 H 0.025 0.975 42 H 0.059 0.941 43 H 0.043 0.957 44 H 0.033 0.967 45 H 0.035 0.965 46 H -0.006 1.006 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.900 -20.639 8.854 23.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.091 4.091 3 C -0.211 4.211 4 N -0.192 5.192 5 C 0.011 3.989 6 C -0.148 4.148 7 C -0.421 4.421 8 C 0.382 3.618 9 O -0.404 6.404 10 N -0.364 5.364 11 C 0.002 3.998 12 C -0.028 4.028 13 O -0.286 6.286 14 C -0.038 4.038 15 C 0.025 3.975 16 N -0.318 5.318 17 C 0.030 3.970 18 C -0.388 4.388 19 H 0.085 0.915 20 C -0.197 4.197 21 N -0.546 5.546 22 Si 0.732 3.268 23 H -0.215 1.215 24 H -0.218 1.218 25 H -0.207 1.207 26 S 0.422 5.578 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.116 0.884 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.119 0.881 35 H 0.235 0.765 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.043 0.957 42 H 0.077 0.923 43 H 0.062 0.938 44 H 0.051 0.949 45 H 0.054 0.946 46 H 0.012 0.988 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 7.742 -20.303 9.003 23.520 hybrid contribution 0.075 1.141 -0.450 1.229 sum 7.817 -19.161 8.553 22.393 Atomic orbital electron populations 1.21796 0.93011 1.02870 1.03082 1.20321 0.97098 0.87073 1.04593 1.27437 1.00700 1.01788 0.91223 1.66078 1.15907 1.05953 1.31281 1.20675 0.94089 0.90418 0.93701 1.20670 1.03815 0.96965 0.93386 1.25468 1.18654 1.00773 0.97232 1.16627 0.77719 0.84908 0.82578 1.90787 1.49987 1.44791 1.54865 1.45801 1.67638 1.16902 1.06071 1.21473 1.00518 0.84972 0.92809 1.22614 0.86659 1.00618 0.92925 1.88018 1.23884 1.94419 1.22292 1.23538 1.01478 0.98578 0.80159 1.20888 0.88332 0.90858 0.97469 1.43908 1.58849 1.13389 1.15691 1.20687 0.96882 0.93676 0.85779 1.19195 1.43564 0.86663 0.89337 0.91489 1.24971 1.01830 0.97048 0.95870 1.70114 1.51697 1.22050 1.10715 0.86324 0.78789 0.81746 0.79943 1.21540 1.21836 1.20703 1.83930 1.58433 1.04181 1.11299 0.92050 0.91087 0.91769 0.89279 0.88448 0.89970 0.90860 0.88108 0.76499 0.89675 0.90139 0.91766 0.93786 0.93242 0.95688 0.92328 0.93838 0.94883 0.94593 0.98766 0.93868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.90 37.16 0.37 -0.54 16 2 C -0.05 -0.32 6.51 -27.87 -0.18 -0.50 16 3 C 0.06 0.64 6.64 -13.29 -0.09 0.55 16 4 N -0.48 -5.83 10.50 -7.70 -0.08 -5.91 16 5 C 0.15 1.94 6.79 -83.89 -0.57 1.37 16 6 C -0.09 -1.05 9.69 36.00 0.35 -0.70 16 7 C -0.30 -3.91 6.48 -37.10 -0.24 -4.15 16 8 C 0.60 8.88 7.78 -12.85 -0.10 8.78 16 9 O -0.53 -9.05 14.27 5.20 0.07 -8.98 16 10 N -0.71 -9.77 5.50 -61.62 -0.34 -10.11 16 11 C 0.13 1.78 6.06 -4.05 -0.02 1.75 16 12 C 0.05 0.71 6.07 37.16 0.23 0.94 16 13 O -0.37 -6.79 9.85 -35.23 -0.35 -7.14 16 14 C 0.04 0.76 6.28 37.16 0.23 1.00 16 15 C 0.15 3.09 6.11 -4.04 -0.02 3.07 16 16 N -0.60 -15.19 2.89 -181.11 -0.52 -15.71 16 17 C 0.17 4.51 8.62 59.85 0.52 5.03 16 18 C -0.26 -7.12 9.68 -15.06 -0.15 -7.26 16 19 H 0.07 1.79 7.86 -52.49 -0.41 1.38 16 20 C 0.00 0.04 5.06 -17.43 -0.09 -0.05 16 21 N -0.90 -26.79 10.67 55.49 0.59 -26.20 16 22 Si 0.90 22.05 29.58 -169.99 -5.03 17.02 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 S 0.16 1.64 22.31 -107.50 -2.40 -0.76 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.10 1.29 6.01 -51.93 -0.31 0.98 16 35 H 0.40 4.93 7.66 -40.82 -0.31 4.62 16 36 H 0.08 1.44 8.14 -51.92 -0.42 1.02 16 37 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 1.11 8.03 -51.93 -0.42 0.69 16 43 H 0.04 0.82 7.86 -51.93 -0.41 0.41 16 44 H 0.03 0.94 7.40 -51.93 -0.38 0.55 16 45 H 0.04 0.99 7.21 -51.93 -0.37 0.62 16 46 H -0.01 -0.15 7.84 -51.93 -0.41 -0.55 16 47 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 402.57 15.07 6.07 6.07 Total: -1.00 -33.58 402.57 -9.41 -42.99 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -7.66 Total: -0.56 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: 0.23 Total: 9.27 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: -0.35 Total: -57.93 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.27 Total: -16.11 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -2.40 Total: -0.76 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.58 -9.41 -42.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676131128.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.826 kcal (2) G-P(sol) polarization free energy of solvation -33.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds