Wall clock time and date at job start Sat Apr 11 2020 06:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.47176 * 2 1 4 4 N 1.30936 * 122.90539 * 90.02411 * 3 2 1 5 5 C 1.29423 * 117.36734 * 179.97438 * 4 3 2 6 6 S 1.70954 * 110.38995 * 0.02562 * 5 4 3 7 7 C 1.35660 * 122.90241 * 269.99812 * 3 2 1 8 8 C 1.46685 * 126.13195 * 0.04842 * 7 3 2 9 9 O 1.21691 * 120.00150 * 351.72200 * 8 7 3 10 10 N 1.34777 * 120.00075 * 171.72229 * 8 7 3 11 11 C 1.46499 * 120.00093 * 0.35680 * 10 8 7 12 12 C 1.46493 * 120.00174 * 180.35180 * 10 8 7 13 13 C 1.53008 * 109.47180 * 90.00055 * 12 10 8 14 14 O 1.42903 * 109.46803 * 64.99946 * 13 12 10 15 15 C 1.42894 * 113.99995 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.47175 * 180.02562 * 15 14 13 17 17 N 1.46492 * 109.47135 * 65.00089 * 16 15 14 18 18 C 1.46500 * 120.00043 * 269.99958 * 17 16 15 19 19 C 1.36943 * 120.00202 * 89.99748 * 17 16 15 20 20 H 1.08002 * 119.99842 * 358.80350 * 19 17 16 21 21 C 1.38814 * 120.00383 * 178.79018 * 19 17 16 22 22 N 1.31619 * 119.99535 * 32.96491 * 21 19 17 23 23 Si 1.86798 * 120.00195 * 212.96299 * 21 19 17 24 24 H 1.48498 * 109.47216 * 95.00350 * 23 21 19 25 25 H 1.48499 * 109.46830 * 214.99930 * 23 21 19 26 26 H 1.48499 * 109.47031 * 334.99733 * 23 21 19 27 27 H 1.09000 * 109.46953 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46978 * 300.00085 * 1 2 3 29 29 H 1.08995 * 109.46941 * 59.99876 * 1 2 3 30 30 H 1.08996 * 109.46978 * 239.99915 * 2 1 3 31 31 H 1.08995 * 109.46941 * 120.00124 * 2 1 3 32 32 H 1.08003 * 124.80946 * 179.97438 * 5 4 3 33 33 H 1.09003 * 109.47105 * 83.11610 * 11 10 8 34 34 H 1.08995 * 109.47633 * 203.12433 * 11 10 8 35 35 H 1.09007 * 109.47088 * 323.12351 * 11 10 8 36 36 H 1.08997 * 109.47832 * 209.99904 * 12 10 8 37 37 H 1.09006 * 109.47596 * 330.00751 * 12 10 8 38 38 H 1.08995 * 109.47202 * 185.00293 * 13 12 10 39 39 H 1.08999 * 109.46644 * 305.00328 * 13 12 10 40 40 H 1.09001 * 109.47034 * 300.00148 * 15 14 13 41 41 H 1.09011 * 109.47252 * 60.00116 * 15 14 13 42 42 H 1.09006 * 109.46991 * 185.00317 * 16 15 14 43 43 H 1.09004 * 109.47145 * 305.00028 * 16 15 14 44 44 H 1.09005 * 109.47136 * 94.25355 * 18 17 16 45 45 H 1.09000 * 109.46875 * 214.24821 * 18 17 16 46 46 H 1.08997 * 109.47333 * 334.24786 * 18 17 16 47 47 H 0.96993 * 119.99897 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2699 2.0913 1.0993 5 6 2.6998 3.3057 0.9744 6 16 2.8450 3.7191 -0.6780 7 6 2.2781 2.1156 -1.1390 8 6 2.1022 1.6211 -2.5087 9 8 1.8472 0.4473 -2.7038 10 7 2.2231 2.4667 -3.5512 11 6 2.5379 3.8781 -3.3168 12 6 2.0399 1.9745 -4.9188 13 6 0.5675 2.1037 -5.3144 14 8 0.2057 3.4855 -5.3582 15 6 -1.1571 3.7183 -5.7194 16 6 -1.4306 5.2235 -5.7350 17 7 -0.6365 5.8531 -6.7928 18 6 0.7106 6.3492 -6.5007 19 6 -1.1534 5.9780 -8.0548 20 1 -2.1389 5.5950 -8.2751 21 6 -0.4108 6.5972 -9.0509 22 7 0.9010 6.4892 -9.0571 23 14 -1.2731 7.5834 -10.3824 24 1 -1.2955 9.0181 -9.9997 25 1 -0.5440 7.4250 -11.6663 26 1 -2.6653 7.0912 -10.5398 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.9329 3.9649 1.7975 33 1 3.6147 3.9948 -3.1943 34 1 2.2026 4.4714 -4.1675 35 1 2.0306 4.2185 -2.4140 36 1 2.6526 2.5627 -5.6019 37 1 2.3396 0.9277 -4.9715 38 1 0.4146 1.6567 -6.2966 39 1 -0.0524 1.5890 -4.5804 40 1 -1.3463 3.3047 -6.7099 41 1 -1.8127 3.2370 -4.9934 42 1 -2.4900 5.3984 -5.9230 43 1 -1.1571 5.6526 -4.7711 44 1 1.4428 5.5814 -6.7510 45 1 0.9049 7.2433 -7.0930 46 1 0.7866 6.5918 -5.4408 47 1 1.4198 6.9214 -9.7533 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689246256.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:10 Heat of formation + Delta-G solvation = 2.651992 kcal Electronic energy + Delta-G solvation = -28289.310695 eV Core-core repulsion = 24407.957301 eV Total energy + Delta-G solvation = -3881.353394 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.63087 -39.43016 -37.57078 -35.82501 -35.08411 -33.59521 -31.77886 -30.89560 -29.33733 -28.07278 -26.96857 -25.93676 -25.77467 -23.61616 -23.14343 -22.95489 -20.87781 -20.35450 -18.73737 -18.62753 -16.94738 -16.75675 -16.46573 -16.11500 -15.70074 -15.53852 -15.01811 -14.79431 -14.44853 -14.32575 -14.03959 -13.84400 -13.61753 -13.41056 -13.23341 -13.12792 -12.87477 -12.41524 -12.28583 -12.14126 -12.07086 -11.63151 -11.49509 -11.33269 -11.10234 -11.03880 -10.94843 -10.71419 -10.53164 -10.14448 -10.05427 -10.02173 -9.78472 -9.76086 -9.59563 -9.17122 -9.03497 -8.66069 -8.25168 -6.92575 -5.82929 -2.97302 0.05455 1.01248 1.40403 2.26676 2.81182 3.02489 3.41294 3.50704 3.50919 3.92298 4.16989 4.38556 4.54870 4.78309 4.82361 4.95194 5.15527 5.23239 5.26323 5.30442 5.32621 5.37188 5.38657 5.50505 5.60690 5.66283 5.80933 5.82534 5.83406 5.86698 6.03480 6.06070 6.12763 6.17851 6.19297 6.38600 6.49986 6.71444 6.81998 7.15698 7.43523 7.52279 7.68765 7.78280 7.87517 7.95108 8.32439 9.22388 9.91550 10.37660 11.26464 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019731 B = 0.002605 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.752491 B =10744.309947 C =11194.212533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.063 4.063 3 C 0.147 3.853 4 N -0.478 5.478 5 C -0.001 4.001 6 S 0.199 5.801 7 C -0.297 4.297 8 C 0.594 3.406 9 O -0.528 6.528 10 N -0.596 5.596 11 C 0.067 3.933 12 C 0.123 3.877 13 C 0.047 3.953 14 O -0.369 6.369 15 C 0.041 3.959 16 C 0.156 3.844 17 N -0.599 5.599 18 C 0.165 3.835 19 C -0.260 4.260 20 H 0.075 0.925 21 C 0.006 3.994 22 N -0.887 5.887 23 Si 0.880 3.120 24 H -0.289 1.289 25 H -0.295 1.295 26 H -0.281 1.281 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.107 0.893 31 H 0.077 0.923 32 H 0.199 0.801 33 H 0.063 0.937 34 H 0.110 0.890 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.056 0.944 39 H 0.043 0.957 40 H 0.046 0.954 41 H 0.025 0.975 42 H 0.060 0.940 43 H 0.044 0.956 44 H 0.016 0.984 45 H 0.057 0.943 46 H -0.004 1.004 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.135 -7.913 18.775 21.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.103 4.103 3 C 0.008 3.992 4 N -0.192 5.192 5 C -0.295 4.295 6 S 0.457 5.543 7 C -0.420 4.420 8 C 0.381 3.619 9 O -0.407 6.407 10 N -0.328 5.328 11 C -0.078 4.078 12 C 0.001 3.999 13 C -0.032 4.032 14 O -0.288 6.288 15 C -0.038 4.038 16 C 0.027 3.973 17 N -0.322 5.322 18 C 0.020 3.980 19 C -0.388 4.388 20 H 0.092 0.908 21 C -0.193 4.193 22 N -0.532 5.532 23 Si 0.709 3.291 24 H -0.216 1.216 25 H -0.222 1.222 26 H -0.206 1.206 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.125 0.875 31 H 0.095 0.905 32 H 0.216 0.784 33 H 0.082 0.918 34 H 0.129 0.871 35 H 0.087 0.913 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.043 0.957 42 H 0.079 0.921 43 H 0.063 0.937 44 H 0.034 0.966 45 H 0.076 0.924 46 H 0.015 0.985 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.553 -7.518 18.644 20.855 hybrid contribution -0.862 -0.311 -0.712 1.161 sum 4.690 -7.829 17.932 20.121 Atomic orbital electron populations 1.21603 0.93957 1.02099 1.01801 1.20460 0.96625 0.88550 1.04629 1.20692 0.95204 0.98106 0.85177 1.66202 1.15130 1.06343 1.31523 1.29142 1.00696 0.96006 1.03698 1.84592 1.58586 1.11346 0.99800 1.25489 1.18400 0.99072 0.99088 1.16764 0.77121 0.85512 0.82478 1.90758 1.49462 1.15938 1.84535 1.47579 1.69286 1.09507 1.06407 1.22114 1.00548 0.81638 1.03472 1.21634 0.96079 1.01245 0.80933 1.22788 0.95355 0.85295 0.99741 1.87912 1.28673 1.22097 1.90158 1.23531 0.81615 1.01128 0.97538 1.20814 0.95555 0.88741 0.92146 1.44054 1.14362 1.67468 1.06266 1.20894 0.85077 0.98687 0.93314 1.19200 0.99209 1.33284 0.87151 0.90750 1.24648 0.95035 1.01967 0.97611 1.70329 1.04842 1.43623 1.34392 0.86584 0.79511 0.81869 0.81114 1.21644 1.22196 1.20601 0.91824 0.92899 0.92573 0.87454 0.90459 0.78438 0.91846 0.87119 0.91282 0.88839 0.88464 0.92624 0.93892 0.93548 0.95711 0.92134 0.93728 0.96585 0.92412 0.98543 0.93830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.90 37.16 0.37 -1.10 16 2 C -0.06 -0.72 5.85 -27.88 -0.16 -0.89 16 3 C 0.15 1.82 6.04 -83.90 -0.51 1.31 16 4 N -0.48 -5.59 10.50 -11.53 -0.12 -5.71 16 5 C 0.00 -0.01 12.22 51.75 0.63 0.62 16 6 S 0.20 1.77 18.14 -107.50 -1.95 -0.18 16 7 C -0.30 -3.64 6.24 -37.10 -0.23 -3.87 16 8 C 0.59 8.21 7.63 -12.85 -0.10 8.11 16 9 O -0.53 -8.26 13.84 5.20 0.07 -8.19 16 10 N -0.60 -7.72 2.84 -183.12 -0.52 -8.24 16 11 C 0.07 0.75 8.70 59.85 0.52 1.27 16 12 C 0.12 1.63 5.78 -4.04 -0.02 1.60 16 13 C 0.05 0.70 6.28 37.16 0.23 0.94 16 14 O -0.37 -6.63 8.86 -35.23 -0.31 -6.94 16 15 C 0.04 0.76 6.28 37.16 0.23 0.99 16 16 C 0.16 3.10 6.11 -4.05 -0.02 3.07 16 17 N -0.60 -14.71 2.90 -181.12 -0.52 -15.24 16 18 C 0.16 3.97 8.82 59.85 0.53 4.50 16 19 C -0.26 -7.04 9.66 -15.06 -0.15 -7.19 16 20 H 0.07 1.98 8.01 -52.49 -0.42 1.56 16 21 C 0.01 0.16 4.84 -17.43 -0.08 0.08 16 22 N -0.89 -25.41 10.80 55.49 0.60 -24.81 16 23 Si 0.88 21.42 29.66 -169.99 -5.04 16.38 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.11 1.35 5.85 -51.93 -0.30 1.05 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.20 1.01 8.06 -52.48 -0.42 0.59 16 33 H 0.06 0.58 7.80 -51.93 -0.41 0.18 16 34 H 0.11 1.43 7.27 -51.93 -0.38 1.05 16 35 H 0.07 0.73 4.64 -23.84 -0.11 0.62 16 36 H 0.09 1.21 8.07 -51.93 -0.42 0.79 16 37 H 0.10 1.21 7.42 -51.93 -0.39 0.83 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 42 H 0.06 1.15 8.04 -51.93 -0.42 0.73 16 43 H 0.04 0.83 7.86 -51.93 -0.41 0.42 16 44 H 0.02 0.41 8.03 -51.93 -0.42 -0.01 16 45 H 0.06 1.53 6.19 -51.93 -0.32 1.21 16 46 H 0.00 -0.09 7.84 -51.93 -0.41 -0.49 16 47 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 391.74 15.07 5.90 5.90 Total: -1.00 -32.24 391.74 -7.99 -40.23 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -7.33 Total: -2.64 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: 1.24 Total: 9.44 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: -0.57 Total: -54.00 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.24 Total: -15.13 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.04 Total: 16.38 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -1.95 Total: -0.18 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.24 -7.99 -40.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689246256.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.881 kcal (2) G-P(sol) polarization free energy of solvation -32.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds