Wall clock time and date at job start Sat Apr 11 2020 06:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50695 * 109.47245 * 2 1 4 4 O 1.34034 * 126.78135 * 269.97726 * 3 2 1 5 5 N 1.20923 * 111.56833 * 180.02562 * 4 3 2 6 6 C 1.30171 * 111.60389 * 0.02562 * 5 4 3 7 7 C 1.50708 * 126.80178 * 179.97438 * 6 5 4 8 8 C 1.35451 * 126.77253 * 90.00242 * 3 2 1 9 9 C 1.50701 * 128.00983 * 0.02562 * 8 3 2 10 10 N 1.46903 * 109.47065 * 89.99502 * 9 8 3 11 11 C 1.46902 * 110.99919 * 180.02562 * 10 9 8 12 12 H 1.08999 * 109.47096 * 325.00467 * 11 10 9 13 13 C 1.53001 * 109.46749 * 85.00412 * 11 10 9 14 14 C 1.53006 * 109.46994 * 205.00343 * 11 10 9 15 15 N 1.46494 * 109.47355 * 55.00300 * 14 11 10 16 16 C 1.34774 * 120.00231 * 180.02562 * 15 14 11 17 17 O 1.21281 * 119.99748 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00213 * 179.97438 * 16 15 14 19 19 S 1.81001 * 109.47274 * 179.97438 * 18 16 15 20 20 C 1.76191 * 99.99868 * 180.02562 * 19 18 16 21 21 H 1.07996 * 120.00549 * 359.97438 * 20 19 18 22 22 C 1.38804 * 119.99958 * 180.02562 * 20 19 18 23 23 N 1.31629 * 120.00299 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 120.00000 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.46915 * 90.00107 * 24 22 20 26 26 H 1.48494 * 109.47434 * 210.00385 * 24 22 20 27 27 H 1.48501 * 109.47026 * 330.00729 * 24 22 20 28 28 H 1.08999 * 109.47261 * 59.99088 * 1 2 3 29 29 H 1.08999 * 109.47371 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46749 * 299.99806 * 1 2 3 31 31 H 1.09002 * 109.46749 * 240.00194 * 2 1 3 32 32 H 1.08999 * 109.47261 * 120.00912 * 2 1 3 33 33 H 1.09003 * 109.46685 * 90.01751 * 7 6 5 34 34 H 1.09000 * 109.47092 * 210.01902 * 7 6 5 35 35 H 1.09002 * 109.46993 * 330.02722 * 7 6 5 36 36 H 1.08997 * 109.47501 * 209.99941 * 9 8 3 37 37 H 1.08995 * 109.47035 * 330.00032 * 9 8 3 38 38 H 1.00892 * 111.00418 * 303.95884 * 10 9 8 39 39 H 1.09003 * 109.46833 * 180.02562 * 13 11 10 40 40 H 1.08998 * 109.47097 * 299.99643 * 13 11 10 41 41 H 1.08999 * 109.47277 * 60.00166 * 13 11 10 42 42 H 1.08997 * 109.46546 * 175.00285 * 14 11 10 43 43 H 1.09004 * 109.46983 * 294.99841 * 14 11 10 44 44 H 0.97005 * 119.99477 * 359.97438 * 15 14 11 45 45 H 1.08997 * 109.47401 * 300.00136 * 18 16 15 46 46 H 1.08998 * 109.46895 * 59.99715 * 18 16 15 47 47 H 0.96999 * 120.00124 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.3003 2.1773 -1.0735 5 7 2.6896 3.2772 -0.7562 6 6 2.7383 3.4137 0.5374 7 6 3.1726 4.6387 1.3003 8 6 2.3027 2.1852 1.0850 9 6 2.1714 1.8121 2.5392 10 7 3.4347 1.2295 3.0112 11 6 3.3435 0.8523 4.4280 12 1 2.7148 1.5698 4.9553 13 6 2.7314 -0.5450 4.5453 14 6 4.7431 0.8495 5.0462 15 7 5.3758 2.1527 4.8283 16 6 6.6212 2.3827 5.2891 17 8 7.2180 1.5109 5.8846 18 6 7.2723 3.7231 5.0645 19 16 8.9279 3.7199 5.7958 20 6 9.4414 5.3577 5.3979 21 1 8.7783 6.0145 4.8545 22 6 10.6986 5.8034 5.7817 23 7 11.0824 7.0268 5.4840 24 14 11.8459 4.6672 6.7209 25 1 12.6829 3.9046 5.7601 26 1 12.7216 5.4722 7.6098 27 1 11.0453 3.7213 7.5391 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5140 0.8899 33 1 2.3086 5.2771 1.4847 34 1 3.6117 4.3377 2.2515 35 1 3.9116 5.1874 0.7163 36 1 1.9413 2.7029 3.1236 37 1 1.3692 1.0835 2.6563 38 1 3.7031 0.4397 2.4436 39 1 2.6633 -0.8248 5.5966 40 1 1.7343 -0.5430 4.1050 41 1 3.3600 -1.2626 4.0180 42 1 4.6672 0.6568 6.1163 43 1 5.3453 0.0705 4.5785 44 1 4.8985 2.8499 4.3516 45 1 7.3478 3.9156 3.9943 46 1 6.6704 4.5023 5.5321 47 1 11.9608 7.3384 5.7526 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690554938.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:12 Heat of formation + Delta-G solvation = 5.617782 kcal Electronic energy + Delta-G solvation = -27108.850317 eV Core-core repulsion = 23227.625529 eV Total energy + Delta-G solvation = -3881.224788 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.18445 -39.36103 -37.97139 -35.74871 -34.91316 -33.77075 -32.40141 -31.70767 -30.09740 -29.34193 -28.85729 -26.43035 -25.75487 -25.41363 -24.22700 -21.87077 -21.35620 -20.25611 -20.23488 -17.90111 -17.84142 -17.35167 -16.35416 -16.27322 -16.12803 -15.68862 -15.08613 -14.93344 -14.89948 -14.59754 -14.22975 -13.83468 -13.61719 -13.51147 -13.31527 -13.27455 -13.13249 -12.93336 -12.88343 -12.76809 -12.75185 -12.48624 -12.10566 -12.01168 -11.86381 -11.65708 -11.31064 -11.22477 -11.15594 -10.97752 -10.55409 -10.09876 -9.82383 -9.57389 -9.43627 -8.97232 -8.88883 -8.79592 -8.44888 -6.86856 -6.25355 -3.96308 1.14155 1.92027 2.76761 2.84061 3.09266 3.35063 3.39297 3.53440 3.67750 3.80438 3.99827 4.06496 4.31890 4.36560 4.44097 4.48447 4.61039 4.61280 4.73701 4.81721 4.82574 4.87371 5.05131 5.13702 5.17068 5.23297 5.23999 5.24720 5.31778 5.33530 5.38191 5.46570 5.54710 5.57453 5.58943 5.65204 5.67093 5.80972 5.85550 5.94685 6.09255 6.48630 6.66830 6.90990 7.79822 7.97868 8.05250 8.45627 8.62430 9.21033 10.83914 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014474 B = 0.002365 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.072636 B =11836.677848 C =13290.042227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.043 4.043 3 C -0.026 4.026 4 O 0.097 5.903 5 N -0.368 5.368 6 C 0.040 3.960 7 C -0.079 4.079 8 C -0.195 4.195 9 C 0.138 3.862 10 N -0.678 5.678 11 C 0.071 3.929 12 H 0.087 0.913 13 C -0.181 4.181 14 C 0.135 3.865 15 N -0.722 5.722 16 C 0.529 3.471 17 O -0.527 6.527 18 C -0.122 4.122 19 S -0.144 6.144 20 C -0.520 4.520 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.881 5.881 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.275 1.275 27 H -0.235 1.235 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.045 0.955 38 H 0.346 0.654 39 H 0.068 0.932 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.403 0.597 45 H 0.096 0.904 46 H 0.095 0.905 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.835 -15.193 -8.726 32.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.081 4.081 3 C -0.091 4.091 4 O 0.033 5.967 5 N -0.074 5.074 6 C -0.119 4.119 7 C -0.137 4.137 8 C -0.199 4.199 9 C 0.009 3.991 10 N -0.309 5.309 11 C -0.039 4.039 12 H 0.105 0.895 13 C -0.240 4.240 14 C 0.009 3.991 15 N -0.376 5.376 16 C 0.314 3.686 17 O -0.402 6.402 18 C -0.273 4.273 19 S 0.083 5.917 20 C -0.667 4.667 21 H 0.106 0.894 22 C -0.114 4.114 23 N -0.518 5.518 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.063 0.937 38 H 0.165 0.835 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.238 0.762 45 H 0.114 0.886 46 H 0.113 0.887 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -25.128 -15.080 -8.625 30.549 hybrid contribution -0.886 0.059 -0.048 0.889 sum -26.014 -15.022 -8.673 31.267 Atomic orbital electron populations 1.21780 0.93420 1.02742 1.02830 1.20100 0.96673 0.86739 1.04589 1.24284 1.01928 0.96654 0.86218 1.84818 1.61440 1.17674 1.32766 1.73884 1.17686 0.99467 1.16366 1.23464 1.00730 0.97953 0.89768 1.20219 1.01900 0.91951 0.99582 1.20777 1.08368 0.94074 0.96676 1.20128 0.90836 0.99617 0.88489 1.60532 1.30789 1.36907 1.02710 1.21858 0.96551 0.96357 0.89096 0.89489 1.22422 1.00935 0.97225 1.03408 1.21234 0.91669 0.86376 0.99776 1.45729 1.16498 1.15698 1.59713 1.20248 0.80857 0.89380 0.78069 1.90688 1.62878 1.46181 1.40467 1.23254 1.01906 0.96704 1.05403 1.84762 1.11398 1.21071 1.74508 1.22325 1.04981 0.96637 1.42785 0.89414 1.24720 0.97024 0.94884 0.94760 1.69940 1.20540 1.16138 1.45181 0.86729 0.82028 0.81732 0.81330 1.19248 1.20009 1.15918 0.91950 0.91211 0.92201 0.89190 0.89001 0.90369 0.89322 0.90318 0.89438 0.93725 0.83537 0.91298 0.92303 0.91886 0.91344 0.91804 0.76183 0.88606 0.88664 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.53 9.90 37.16 0.37 -0.16 16 2 C -0.04 -0.18 6.30 -27.88 -0.18 -0.36 16 3 C -0.03 -0.20 6.74 -35.31 -0.24 -0.44 16 4 O 0.10 1.03 11.20 17.19 0.19 1.23 16 5 N -0.37 -4.50 12.07 33.42 0.40 -4.10 16 6 C 0.04 0.42 7.33 -82.10 -0.60 -0.18 16 7 C -0.08 -0.69 10.39 36.01 0.37 -0.31 16 8 C -0.19 -1.58 5.83 -104.42 -0.61 -2.19 16 9 C 0.14 0.81 5.73 -4.97 -0.03 0.78 16 10 N -0.68 -4.43 5.68 -107.99 -0.61 -5.05 16 11 C 0.07 0.45 2.75 -67.71 -0.19 0.26 16 12 H 0.09 0.51 7.80 -51.93 -0.41 0.11 16 13 C -0.18 -0.85 9.16 37.16 0.34 -0.51 16 14 C 0.13 1.37 5.37 -4.04 -0.02 1.34 16 15 N -0.72 -9.09 5.39 -60.30 -0.32 -9.42 16 16 C 0.53 9.47 7.85 -10.99 -0.09 9.39 16 17 O -0.53 -11.47 15.86 5.56 0.09 -11.39 16 18 C -0.12 -2.40 6.16 36.01 0.22 -2.18 16 19 S -0.14 -3.70 18.55 -107.50 -1.99 -5.69 16 20 C -0.52 -15.15 10.04 30.94 0.31 -14.84 16 21 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 22 C 0.09 2.80 5.50 -17.43 -0.10 2.70 16 23 N -0.88 -26.87 13.97 55.49 0.78 -26.09 16 24 Si 0.86 22.05 27.74 -169.99 -4.72 17.34 16 25 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.27 -6.80 7.11 56.52 0.40 -6.39 16 27 H -0.24 -6.04 6.74 56.52 0.38 -5.66 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.28 8.05 -51.93 -0.42 -0.14 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.09 0.50 8.06 -51.93 -0.42 0.08 16 37 H 0.04 0.20 7.37 -51.93 -0.38 -0.18 16 38 H 0.35 2.24 8.46 -39.30 -0.33 1.91 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.06 0.22 7.45 -51.93 -0.39 -0.17 16 41 H 0.06 0.30 8.13 -51.93 -0.42 -0.12 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.40 4.27 8.14 -40.82 -0.33 3.93 16 45 H 0.10 1.79 8.14 -51.92 -0.42 1.37 16 46 H 0.10 1.74 8.14 -51.92 -0.42 1.31 16 47 H 0.27 7.65 8.31 -40.82 -0.34 7.32 16 LS Contribution 407.95 15.07 6.15 6.15 Total: -1.00 -35.77 407.95 -8.22 -43.99 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -7.75 Total: -0.28 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -0.43 Total: -6.70 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: 0.24 Total: -44.65 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.28 Total: -10.16 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.72 Total: 17.34 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -1.99 Total: -5.69 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.77 -8.22 -43.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690554938.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.605 kcal (2) G-P(sol) polarization free energy of solvation -35.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds