Wall clock time and date at job start Sat Apr 11 2020 06:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50702 * 109.47290 * 2 1 4 4 N 1.30258 * 125.61823 * 89.97535 * 3 2 1 5 5 C 1.34472 * 108.70247 * 180.02562 * 4 3 2 6 6 C 1.50700 * 126.16629 * 180.02562 * 5 4 3 7 7 C 1.34327 * 107.67005 * 0.02562 * 5 4 3 8 8 C 1.50701 * 126.44653 * 180.02562 * 7 5 4 9 9 N 1.46901 * 109.46947 * 89.98297 * 8 7 5 10 10 C 1.46901 * 110.99945 * 293.95305 * 9 8 7 11 11 C 1.46907 * 110.99746 * 170.00279 * 9 8 7 12 12 C 1.53004 * 109.46453 * 189.99698 * 11 9 8 13 13 N 1.46509 * 109.46666 * 179.97438 * 12 11 9 14 14 C 1.34773 * 119.99819 * 180.02562 * 13 12 11 15 15 O 1.21280 * 120.00403 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99877 * 180.02562 * 14 13 12 17 17 S 1.80997 * 109.47172 * 179.97438 * 16 14 13 18 18 C 1.76208 * 99.99820 * 180.02562 * 17 16 14 19 19 H 1.07994 * 119.99904 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99782 * 179.97438 * 18 17 16 21 21 N 1.31635 * 119.99969 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00010 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46776 * 59.99926 * 22 20 18 24 24 H 1.48493 * 109.47295 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46747 * 300.00175 * 22 20 18 26 26 O 1.33964 * 125.62261 * 270.00512 * 3 2 1 27 27 H 1.09002 * 109.47131 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47051 * 299.99833 * 1 2 3 29 29 H 1.08995 * 109.47275 * 59.99605 * 1 2 3 30 30 H 1.09000 * 109.47334 * 240.00520 * 2 1 3 31 31 H 1.09003 * 109.47256 * 119.99747 * 2 1 3 32 32 H 1.08998 * 109.47177 * 269.97578 * 6 5 4 33 33 H 1.09005 * 109.46916 * 29.98023 * 6 5 4 34 34 H 1.09004 * 109.46850 * 149.97548 * 6 5 4 35 35 H 1.08999 * 109.47037 * 209.97802 * 8 7 5 36 36 H 1.09001 * 109.47192 * 329.98291 * 8 7 5 37 37 H 1.08996 * 109.47168 * 60.00132 * 10 9 8 38 38 H 1.09003 * 109.47490 * 180.02562 * 10 9 8 39 39 H 1.09002 * 109.47049 * 300.00465 * 10 9 8 40 40 H 1.08994 * 109.46982 * 309.99139 * 11 9 8 41 41 H 1.08994 * 109.47296 * 69.99773 * 11 9 8 42 42 H 1.09000 * 109.47498 * 299.99499 * 12 11 9 43 43 H 1.08994 * 109.47308 * 60.00082 * 12 11 9 44 44 H 0.97001 * 119.99646 * 359.97438 * 13 12 11 45 45 H 1.09001 * 109.47547 * 300.00042 * 16 14 13 46 46 H 1.09007 * 109.47060 * 59.99581 * 16 14 13 47 47 H 0.96999 * 119.99592 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2848 2.1362 1.0589 5 6 2.7133 3.3493 0.6676 6 6 3.1149 4.4852 1.5728 7 6 2.7188 3.3661 -0.6755 8 6 3.1269 4.5200 -1.5548 9 7 4.5652 4.4331 -1.8405 10 6 5.3573 4.6276 -0.6187 11 6 4.9547 5.3962 -2.8792 12 6 6.3898 5.1111 -3.3265 13 7 6.7781 6.0712 -4.3628 14 6 8.0083 6.0114 -4.9099 15 8 8.7939 5.1627 -4.5447 16 6 8.4079 6.9993 -5.9754 17 16 10.1056 6.6621 -6.5048 18 6 10.3053 7.9265 -7.7157 19 1 9.4943 8.6089 -7.9226 20 6 11.5051 8.0453 -8.4036 21 7 12.4937 7.2138 -8.1509 22 14 11.7166 9.3852 -9.6878 23 1 11.5351 10.7143 -9.0509 24 1 13.0782 9.2985 -10.2740 25 1 10.7045 9.2076 -10.7598 26 8 2.2923 2.1565 -1.0890 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.2428 5.1017 1.7910 33 1 3.5179 4.0837 2.5027 34 1 3.8744 5.0918 1.0795 35 1 2.5677 4.4799 -2.4896 36 1 2.9139 5.4590 -1.0439 37 1 5.0983 3.8580 0.1085 38 1 6.4183 4.5588 -0.8587 39 1 5.1429 5.6106 -0.1993 40 1 4.2828 5.3020 -3.7322 41 1 4.8932 6.4078 -2.4781 42 1 7.0618 5.2053 -2.4734 43 1 6.4513 4.0995 -3.7275 44 1 6.1494 6.7494 -4.6557 45 1 7.7356 6.9057 -6.8283 46 1 8.3469 8.0110 -5.5742 47 1 13.3320 7.2966 -8.6319 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690925512.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:17 Heat of formation + Delta-G solvation = -16.307937 kcal Electronic energy + Delta-G solvation = -26086.078681 eV Core-core repulsion = 22203.903123 eV Total energy + Delta-G solvation = -3882.175558 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.70842 -39.34196 -38.22392 -35.51847 -34.97382 -34.27716 -32.43000 -31.73268 -30.21323 -29.34463 -28.10688 -26.67544 -25.52721 -25.06517 -23.31387 -21.89370 -21.62731 -20.68987 -20.35740 -17.86089 -17.38034 -16.99364 -16.41832 -16.24532 -16.17923 -15.44661 -15.36253 -14.99986 -14.88728 -14.80005 -14.55835 -13.94697 -13.88231 -13.69500 -13.65707 -13.27154 -13.11066 -13.02404 -12.78112 -12.56397 -12.31114 -12.24141 -12.11854 -11.93600 -11.77973 -11.67077 -11.33451 -11.21298 -11.04900 -11.04027 -10.80713 -10.76962 -9.83037 -9.44322 -9.08837 -9.06617 -8.90120 -8.75705 -8.24291 -6.50352 -6.21654 -3.92506 1.03821 2.21909 2.30497 2.94109 3.09121 3.23224 3.24725 3.28720 3.47788 3.56570 3.89205 4.20297 4.25626 4.38610 4.43639 4.55380 4.62938 4.66330 4.72547 4.77938 4.89611 5.01120 5.05975 5.13349 5.14412 5.16214 5.17893 5.20649 5.27201 5.31673 5.41023 5.54962 5.57716 5.63576 5.67679 5.70797 5.75625 5.88071 5.89897 6.00401 6.12673 6.42318 6.43303 6.62639 7.41691 7.58883 7.67510 8.34723 8.59957 9.23396 10.85702 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.030490 B = 0.001498 C = 0.001478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.114860 B =18686.699249 C =18943.490775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.027 4.027 3 C 0.195 3.805 4 N -0.481 5.481 5 C -0.006 4.006 6 C -0.082 4.082 7 C -0.038 4.038 8 C 0.140 3.860 9 N -0.535 5.535 10 C 0.010 3.990 11 C 0.047 3.953 12 C 0.124 3.876 13 N -0.740 5.740 14 C 0.532 3.468 15 O -0.516 6.516 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 O -0.191 6.191 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.034 0.966 40 H 0.085 0.915 41 H 0.046 0.954 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.397 0.603 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.679 -7.516 18.113 33.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.065 4.065 3 C -0.012 4.012 4 N -0.211 5.211 5 C -0.127 4.127 6 C -0.139 4.139 7 C -0.091 4.091 8 C 0.013 3.987 9 N -0.260 5.260 10 C -0.138 4.138 11 C -0.081 4.081 12 C 0.000 4.000 13 N -0.395 5.395 14 C 0.318 3.682 15 O -0.389 6.389 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.199 1.199 26 O -0.077 6.077 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.113 0.887 31 H 0.124 0.876 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.115 0.885 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.053 0.947 40 H 0.103 0.897 41 H 0.064 0.936 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.231 0.769 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -25.139 -9.700 19.072 33.012 hybrid contribution -1.158 3.159 -1.739 3.787 sum -26.297 -6.541 17.333 32.168 Atomic orbital electron populations 1.21780 0.93073 1.03036 1.02889 1.20075 0.96827 0.84257 1.05326 1.26243 0.99618 0.96682 0.78663 1.70344 1.17003 1.03432 1.30347 1.21497 1.04285 0.94834 0.92051 1.20368 1.01756 0.93409 0.98389 1.22852 1.05464 0.86506 0.94314 1.20378 0.89208 0.90699 0.98442 1.61764 1.02784 1.51662 1.09805 1.22771 0.99326 1.00075 0.91604 1.22277 0.97148 0.93648 0.95059 1.21182 0.93581 0.93926 0.91357 1.45907 1.15991 1.35714 1.41884 1.20295 0.80757 0.85041 0.82065 1.90712 1.50522 1.36494 1.61218 1.23528 1.07110 1.00539 0.99190 1.85417 1.04399 1.44364 1.49141 1.22831 1.02671 1.18079 1.24940 0.90973 1.24991 0.94820 0.96660 0.97062 1.70011 1.04014 1.35751 1.40486 0.86223 0.77502 0.81093 0.80674 1.19950 1.20798 1.19946 1.84395 1.63577 1.22232 1.37482 0.90806 0.91833 0.92150 0.88739 0.87615 0.90779 0.90350 0.90275 0.88542 0.90969 0.90758 0.90123 0.94728 0.89703 0.93584 0.91484 0.90647 0.76926 0.89182 0.89226 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.89 37.15 0.37 -0.31 16 2 C -0.03 -0.15 6.56 -27.89 -0.18 -0.34 16 3 C 0.20 1.88 7.60 -12.94 -0.10 1.79 16 4 N -0.48 -5.30 11.29 -7.36 -0.08 -5.39 16 5 C -0.01 -0.06 6.19 -82.82 -0.51 -0.57 16 6 C -0.08 -0.56 9.50 36.01 0.34 -0.22 16 7 C -0.04 -0.36 6.27 -35.69 -0.22 -0.59 16 8 C 0.14 1.03 5.19 -4.97 -0.03 1.00 16 9 N -0.54 -4.58 4.75 -244.36 -1.16 -5.75 16 10 C 0.01 0.08 7.79 60.07 0.47 0.55 16 11 C 0.05 0.37 5.07 -3.82 -0.02 0.35 16 12 C 0.12 1.43 5.61 -4.03 -0.02 1.41 16 13 N -0.74 -9.51 5.56 -60.29 -0.33 -9.84 16 14 C 0.53 9.86 7.85 -10.99 -0.09 9.78 16 15 O -0.52 -11.81 15.86 5.56 0.09 -11.72 16 16 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 17 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 18 C -0.54 -15.27 9.50 30.94 0.29 -14.97 16 19 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 22 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 O -0.19 -2.04 10.78 5.36 0.06 -1.98 16 27 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.45 4.64 -51.93 -0.24 0.20 16 35 H 0.10 0.62 7.93 -51.93 -0.41 0.21 16 36 H 0.07 0.40 7.78 -51.93 -0.40 -0.01 16 37 H 0.07 0.65 5.66 -51.93 -0.29 0.35 16 38 H 0.08 0.72 6.30 -51.93 -0.33 0.39 16 39 H 0.03 0.22 7.08 -51.93 -0.37 -0.14 16 40 H 0.08 0.59 7.93 -51.93 -0.41 0.17 16 41 H 0.05 0.31 8.12 -51.93 -0.42 -0.12 16 42 H 0.07 0.84 6.47 -51.93 -0.34 0.50 16 43 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.40 3.77 8.47 -40.82 -0.35 3.42 16 45 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 46 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 47 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 399.50 15.07 6.02 6.02 Total: -1.00 -36.87 399.50 -8.82 -45.70 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -7.33 Total: -1.14 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: 0.43 Total: -2.94 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: -0.85 Total: -46.39 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: 0.15 Total: -13.70 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.87 -8.82 -45.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690925512.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.387 kcal (2) G-P(sol) polarization free energy of solvation -36.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds