Wall clock time and date at job start Sat Apr 11 2020 06:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50702 * 109.47290 * 2 1 4 4 N 1.30258 * 125.61823 * 89.97535 * 3 2 1 5 5 C 1.34472 * 108.70247 * 180.02562 * 4 3 2 6 6 C 1.50700 * 126.16629 * 180.02562 * 5 4 3 7 7 C 1.34327 * 107.67005 * 0.02562 * 5 4 3 8 8 C 1.50701 * 126.44653 * 180.02562 * 7 5 4 9 9 N 1.46901 * 109.46947 * 89.98297 * 8 7 5 10 10 C 1.46901 * 110.99945 * 293.95305 * 9 8 7 11 11 C 1.46907 * 110.99746 * 170.00279 * 9 8 7 12 12 C 1.53004 * 109.46453 * 189.99698 * 11 9 8 13 13 N 1.46509 * 109.46666 * 179.97438 * 12 11 9 14 14 C 1.34773 * 119.99819 * 180.02562 * 13 12 11 15 15 O 1.21280 * 120.00403 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99877 * 180.02562 * 14 13 12 17 17 S 1.80997 * 109.47172 * 179.97438 * 16 14 13 18 18 C 1.76208 * 99.99820 * 180.02562 * 17 16 14 19 19 H 1.07994 * 119.99904 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99782 * 179.97438 * 18 17 16 21 21 N 1.31635 * 119.99969 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00010 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46776 * 59.99926 * 22 20 18 24 24 H 1.48493 * 109.47295 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46747 * 300.00175 * 22 20 18 26 26 O 1.33964 * 125.62261 * 270.00512 * 3 2 1 27 27 H 1.09002 * 109.47131 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47051 * 299.99833 * 1 2 3 29 29 H 1.08995 * 109.47275 * 59.99605 * 1 2 3 30 30 H 1.09000 * 109.47334 * 240.00520 * 2 1 3 31 31 H 1.09003 * 109.47256 * 119.99747 * 2 1 3 32 32 H 1.08998 * 109.47177 * 269.97578 * 6 5 4 33 33 H 1.09005 * 109.46916 * 29.98023 * 6 5 4 34 34 H 1.09004 * 109.46850 * 149.97548 * 6 5 4 35 35 H 1.08999 * 109.47037 * 209.97802 * 8 7 5 36 36 H 1.09001 * 109.47192 * 329.98291 * 8 7 5 37 37 H 1.08996 * 109.47168 * 60.00132 * 10 9 8 38 38 H 1.09003 * 109.47490 * 180.02562 * 10 9 8 39 39 H 1.09002 * 109.47049 * 300.00465 * 10 9 8 40 40 H 1.08994 * 109.46982 * 309.99139 * 11 9 8 41 41 H 1.08994 * 109.47296 * 69.99773 * 11 9 8 42 42 H 1.09000 * 109.47498 * 299.99499 * 12 11 9 43 43 H 1.08994 * 109.47308 * 60.00082 * 12 11 9 44 44 H 0.97001 * 119.99646 * 359.97438 * 13 12 11 45 45 H 1.09001 * 109.47547 * 300.00042 * 16 14 13 46 46 H 1.09007 * 109.47060 * 59.99581 * 16 14 13 47 47 H 0.96999 * 119.99592 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2848 2.1362 1.0589 5 6 2.7133 3.3493 0.6676 6 6 3.1149 4.4852 1.5728 7 6 2.7188 3.3661 -0.6755 8 6 3.1269 4.5200 -1.5548 9 7 4.5652 4.4331 -1.8405 10 6 5.3573 4.6276 -0.6187 11 6 4.9547 5.3962 -2.8792 12 6 6.3898 5.1111 -3.3265 13 7 6.7781 6.0712 -4.3628 14 6 8.0083 6.0114 -4.9099 15 8 8.7939 5.1627 -4.5447 16 6 8.4079 6.9993 -5.9754 17 16 10.1056 6.6621 -6.5048 18 6 10.3053 7.9265 -7.7157 19 1 9.4943 8.6089 -7.9226 20 6 11.5051 8.0453 -8.4036 21 7 12.4937 7.2138 -8.1509 22 14 11.7166 9.3852 -9.6878 23 1 11.5351 10.7143 -9.0509 24 1 13.0782 9.2985 -10.2740 25 1 10.7045 9.2076 -10.7598 26 8 2.2923 2.1565 -1.0890 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.2428 5.1017 1.7910 33 1 3.5179 4.0837 2.5027 34 1 3.8744 5.0918 1.0795 35 1 2.5677 4.4799 -2.4896 36 1 2.9139 5.4590 -1.0439 37 1 5.0983 3.8580 0.1085 38 1 6.4183 4.5588 -0.8587 39 1 5.1429 5.6106 -0.1993 40 1 4.2828 5.3020 -3.7322 41 1 4.8932 6.4078 -2.4781 42 1 7.0618 5.2053 -2.4734 43 1 6.4513 4.0995 -3.7275 44 1 6.1494 6.7494 -4.6557 45 1 7.7356 6.9057 -6.8283 46 1 8.3469 8.0110 -5.5742 47 1 13.3320 7.2966 -8.6319 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690925512.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:16 Heat of formation + Delta-G solvation = -45.844773 kcal Electronic energy + Delta-G solvation = -26087.359495 eV Core-core repulsion = 22203.903123 eV Total energy + Delta-G solvation = -3883.456372 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.39829 -40.66972 -39.01402 -36.25403 -35.91194 -35.01992 -34.57250 -32.50166 -31.35999 -30.05856 -29.09812 -27.66095 -27.26690 -25.79045 -23.97099 -22.58012 -22.35000 -21.80925 -21.26918 -19.82342 -18.11778 -17.88584 -17.58362 -17.32809 -17.00363 -16.86727 -16.36140 -16.22651 -15.99892 -15.75646 -15.40309 -15.08228 -14.84343 -14.66754 -14.41746 -14.26065 -14.21150 -13.85101 -13.56867 -13.49146 -13.34692 -13.16050 -12.87109 -12.85435 -12.77076 -12.64535 -12.59699 -12.45316 -12.18969 -12.08641 -11.89564 -11.73979 -11.52059 -11.11811 -11.00260 -10.26665 -10.12623 -9.71873 -9.37038 -8.66102 -8.33445 -6.11931 0.35643 1.27115 1.44984 1.46940 1.54233 1.58720 1.61320 1.67867 2.19359 2.28967 2.96988 3.00709 3.03014 3.34763 3.67111 3.75931 3.80005 3.98051 4.02351 4.07685 4.17351 4.22211 4.24256 4.32158 4.38739 4.42151 4.47819 4.52494 4.54445 4.66062 4.69133 4.75877 4.84784 4.92840 4.92961 4.95157 5.01180 5.07555 5.11966 5.26089 5.38353 5.40675 5.42664 5.83486 5.87823 6.20623 6.50970 6.72525 7.07679 7.25198 8.75517 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.030490 B = 0.001498 C = 0.001478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.114860 B =18686.699249 C =18943.490775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.028 4.028 3 C 0.188 3.812 4 N -0.512 5.512 5 C -0.019 4.019 6 C -0.079 4.079 7 C -0.051 4.051 8 C 0.144 3.856 9 N -0.554 5.554 10 C 0.013 3.987 11 C 0.059 3.941 12 C 0.125 3.875 13 N -0.710 5.710 14 C 0.533 3.467 15 O -0.568 6.568 16 C -0.128 4.128 17 S -0.155 6.155 18 C -0.547 4.547 19 H 0.084 0.916 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 0.999 3.001 23 H -0.261 1.261 24 H -0.280 1.280 25 H -0.262 1.262 26 O -0.207 6.207 27 H 0.095 0.905 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.107 0.893 31 H 0.114 0.886 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.102 0.898 41 H 0.070 0.930 42 H 0.057 0.943 43 H 0.053 0.947 44 H 0.419 0.581 45 H 0.112 0.888 46 H 0.113 0.887 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.121 -5.618 17.713 34.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.066 4.066 3 C -0.019 4.019 4 N -0.242 5.242 5 C -0.140 4.140 6 C -0.136 4.136 7 C -0.104 4.104 8 C 0.017 3.983 9 N -0.279 5.279 10 C -0.135 4.135 11 C -0.069 4.069 12 C 0.001 3.999 13 N -0.365 5.365 14 C 0.319 3.681 15 O -0.446 6.446 16 C -0.279 4.279 17 S 0.072 5.928 18 C -0.695 4.695 19 H 0.103 0.897 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.186 1.186 24 H -0.205 1.205 25 H -0.186 1.186 26 O -0.094 6.094 27 H 0.114 0.886 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.126 0.874 31 H 0.132 0.868 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.110 0.890 35 H 0.125 0.875 36 H 0.114 0.886 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.120 0.880 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.256 0.744 45 H 0.130 0.870 46 H 0.131 0.869 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -27.653 -7.774 18.691 34.270 hybrid contribution -0.511 2.490 -1.507 2.955 sum -28.164 -5.284 17.184 33.413 Atomic orbital electron populations 1.21746 0.92088 1.04215 1.02104 1.20311 0.97564 0.82395 1.06341 1.27032 0.98849 0.97706 0.78264 1.70354 1.18234 1.04431 1.31230 1.21971 1.04075 0.95133 0.92774 1.20439 1.02577 0.92793 0.97793 1.23319 1.05569 0.86723 0.94762 1.20494 0.88201 0.90674 0.98932 1.61651 1.03680 1.52470 1.10102 1.22711 0.98448 1.00887 0.91439 1.22160 0.94474 0.94604 0.95634 1.21231 0.96093 0.92379 0.90186 1.45570 1.14243 1.35816 1.40825 1.20089 0.81977 0.84144 0.81881 1.90703 1.52515 1.38488 1.62922 1.23362 1.01992 1.02071 1.00493 1.85629 1.11347 1.45700 1.50159 1.23186 1.03345 1.18057 1.24906 0.89747 1.26136 0.94308 0.99251 0.99436 1.70186 1.04687 1.37968 1.41984 0.84999 0.77665 0.77761 0.77539 1.18581 1.20503 1.18644 1.84393 1.63979 1.22944 1.38128 0.88616 0.92840 0.92640 0.87450 0.86796 0.89511 0.90788 0.88991 0.87527 0.88565 0.91769 0.91518 0.92631 0.88019 0.91199 0.92472 0.92851 0.74372 0.87001 0.86918 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.89 71.98 0.71 -0.47 16 2 C -0.03 -0.31 6.56 29.85 0.20 -0.11 16 3 C 0.19 3.63 7.60 88.34 0.67 4.30 16 4 N -0.51 -11.32 11.29 -291.98 -3.30 -14.62 16 5 C -0.02 -0.36 6.19 41.26 0.26 -0.11 16 6 C -0.08 -0.98 9.50 71.24 0.68 -0.30 16 7 C -0.05 -0.92 6.27 24.79 0.16 -0.77 16 8 C 0.14 1.76 5.19 85.56 0.44 2.20 16 9 N -0.55 -8.37 4.75 -927.03 -4.41 -12.77 16 10 C 0.01 0.19 7.79 127.69 0.99 1.18 16 11 C 0.06 0.75 5.07 86.30 0.44 1.18 16 12 C 0.13 2.71 5.61 86.38 0.48 3.19 16 13 N -0.71 -16.62 5.56 -463.05 -2.57 -19.19 16 14 C 0.53 19.32 7.85 87.66 0.69 20.00 16 15 O -0.57 -26.58 15.86 -3.03 -0.05 -26.63 16 16 C -0.13 -4.93 6.16 71.24 0.44 -4.49 16 17 S -0.16 -8.61 20.57 -56.49 -1.16 -9.78 16 18 C -0.55 -31.03 9.50 67.96 0.65 -30.38 16 19 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 20 C 0.01 0.76 5.49 84.86 0.47 1.23 16 21 N -0.91 -56.05 13.22 21.65 0.29 -55.76 16 22 Si 1.00 43.22 29.55 68.60 2.03 45.25 16 23 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 24 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 25 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 26 O -0.21 -4.39 10.78 -3.73 -0.04 -4.43 16 27 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.09 0.85 4.64 -2.38 -0.01 0.84 16 35 H 0.11 1.08 7.93 -2.39 -0.02 1.06 16 36 H 0.10 0.71 7.78 -2.39 -0.02 0.69 16 37 H 0.06 1.08 5.66 -2.39 -0.01 1.07 16 38 H 0.07 1.16 6.30 -2.39 -0.02 1.14 16 39 H 0.06 0.57 7.08 -2.39 -0.02 0.55 16 40 H 0.10 1.00 7.93 -2.39 -0.02 0.98 16 41 H 0.07 0.61 8.12 -2.39 -0.02 0.59 16 42 H 0.06 1.39 6.47 -2.39 -0.02 1.37 16 43 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.42 6.33 8.47 -92.71 -0.79 5.55 16 45 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 46 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 47 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -83.71 399.50 -1.75 -85.46 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.20 Total: 15.81 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: 7.27 Total: -3.34 kcal Atomic # 7 Polarization: -92.35 SS G_CDS: -9.99 Total: -102.34 kcal Atomic # 8 Polarization: -30.98 SS G_CDS: -0.09 Total: -31.06 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.78 kcal Total: -83.71 -1.75 -85.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690925512.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.618 kcal (2) G-P(sol) polarization free energy of solvation -83.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds