Wall clock time and date at job start Sat Apr 11 2020 06:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47337 * 341.11868 * 3 2 1 5 5 C 1.34779 * 120.00063 * 263.31729 * 4 3 2 6 6 O 1.21712 * 119.99885 * 174.05051 * 5 4 3 7 7 C 1.46592 * 119.99694 * 354.04833 * 5 4 3 8 8 C 1.41163 * 126.56500 * 27.50548 * 7 5 4 9 9 N 1.30524 * 108.27276 * 179.85439 * 8 7 5 10 10 N 1.39995 * 109.37159 * 0.40730 * 9 8 7 11 11 C 1.38449 * 143.84856 * 179.73554 * 10 9 8 12 12 C 1.33075 * 108.41978 * 180.02562 * 11 10 9 13 13 N 1.38062 * 108.13803 * 0.02562 * 12 11 10 14 14 H 0.96994 * 126.16352 * 179.97438 * 13 12 11 15 15 C 1.35015 * 108.27385 * 359.74002 * 10 9 8 16 16 C 1.46500 * 119.99892 * 83.31126 * 4 3 2 17 17 C 1.53038 * 109.46492 * 300.00225 * 16 4 3 18 18 C 1.53187 * 109.31564 * 181.38366 * 17 16 4 19 19 N 1.46924 * 108.89346 * 305.29474 * 18 17 16 20 20 C 1.36940 * 120.63106 * 233.67318 * 19 18 17 21 21 H 1.07992 * 120.00109 * 39.38584 * 20 19 18 22 22 C 1.38817 * 119.99936 * 219.38875 * 20 19 18 23 23 N 1.31618 * 120.00200 * 17.75921 * 22 20 19 24 24 Si 1.86798 * 119.99838 * 197.76907 * 22 20 19 25 25 H 1.48495 * 109.47584 * 89.99698 * 24 22 20 26 26 H 1.48503 * 109.46878 * 209.99708 * 24 22 20 27 27 H 1.48505 * 109.47079 * 329.99270 * 24 22 20 28 28 C 1.47205 * 118.55584 * 53.54024 * 19 18 17 29 29 C 1.53045 * 109.45669 * 60.07347 * 16 4 3 30 30 H 4.40640 * 5.51269 * 180.02562 * 4 1 2 31 31 H 1.09006 * 109.46738 * 221.11677 * 3 2 1 32 32 H 1.08995 * 109.46820 * 101.11967 * 3 2 1 33 33 H 1.07997 * 125.85917 * 0.02562 * 8 7 5 34 34 H 1.07998 * 125.79280 * 359.97089 * 11 10 9 35 35 H 1.07999 * 125.93018 * 180.02562 * 12 11 10 36 36 H 1.09004 * 109.44930 * 180.02562 * 16 4 3 37 37 H 1.08999 * 109.49508 * 61.43107 * 17 16 4 38 38 H 1.08999 * 109.49644 * 301.33756 * 17 16 4 39 39 H 1.09002 * 109.58353 * 65.14935 * 18 17 16 40 40 H 1.08994 * 109.58761 * 185.43384 * 18 17 16 41 41 H 0.96995 * 120.00318 * 180.02562 * 23 22 20 42 42 H 1.08996 * 109.53745 * 186.67370 * 28 19 18 43 43 H 1.09005 * 109.68187 * 66.36652 * 28 19 18 44 44 H 1.08999 * 109.49406 * 298.56019 * 29 16 4 45 45 H 1.08997 * 109.50218 * 58.63017 * 29 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1350 -1.3060 0.4470 5 6 3.4878 -1.4890 1.7348 6 8 3.7904 -2.5993 2.1310 7 6 3.5071 -0.3507 2.6583 8 6 2.7215 0.8187 2.5682 9 7 3.0234 1.5931 3.5746 10 7 4.0124 0.9793 4.3525 11 6 4.8021 1.1303 5.4795 12 6 5.5685 0.0495 5.6039 13 7 5.2792 -0.8051 4.5588 14 1 5.6878 -1.6697 4.3966 15 6 4.3114 -0.2128 3.7935 16 6 3.2404 -2.4137 -0.5059 17 6 1.8590 -2.7161 -1.0911 18 6 1.9670 -3.8971 -2.0608 19 7 2.9926 -3.5935 -3.0680 20 6 2.7033 -3.6726 -4.4042 21 1 1.7460 -3.3325 -4.7705 22 6 3.6406 -4.1900 -5.2878 23 7 4.6416 -4.9150 -4.8354 24 14 3.4812 -3.8571 -7.1190 25 1 4.2130 -2.6111 -7.4612 26 1 4.0570 -4.9944 -7.8807 27 1 2.0469 -3.7014 -7.4708 28 6 4.3349 -3.2002 -2.6091 29 6 4.2004 -2.0269 -1.6333 30 1 -1.0497 -0.0004 -0.0001 31 1 3.0090 0.7751 0.6758 32 1 3.0092 0.1990 -1.0083 33 1 1.9935 1.0342 1.8001 34 1 4.7978 1.9813 6.1445 35 1 6.2912 -0.1283 6.3865 36 1 3.6195 -3.2982 0.0062 37 1 1.4902 -1.8400 -1.6245 38 1 1.1699 -2.9688 -0.2853 39 1 2.2486 -4.7959 -1.5120 40 1 1.0072 -4.0550 -2.5526 41 1 5.2967 -5.2762 -5.4528 42 1 4.9381 -2.8965 -3.4646 43 1 4.8119 -4.0412 -2.1058 44 1 3.8094 -1.1573 -2.1616 45 1 5.1776 -1.7885 -1.2134 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699786676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:25 Heat of formation + Delta-G solvation = 201.833111 kcal Electronic energy + Delta-G solvation = -29797.314008 eV Core-core repulsion = 25821.446555 eV Total energy + Delta-G solvation = -3975.867453 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.34858 -39.99145 -38.26422 -37.21403 -35.55695 -33.25186 -32.76767 -32.09028 -30.21504 -29.89934 -29.80477 -28.50854 -27.13893 -25.05649 -23.16098 -22.80833 -22.13692 -21.67843 -21.34655 -19.91259 -19.26253 -18.21985 -17.57525 -16.77212 -16.65577 -16.43391 -15.96153 -15.61548 -15.22586 -14.80704 -14.69894 -14.35287 -14.01149 -13.77812 -13.64781 -13.47262 -13.28782 -12.95463 -12.92773 -12.55331 -12.32807 -12.18078 -11.49146 -11.24711 -11.11786 -10.90959 -10.83711 -10.75574 -10.49044 -10.36220 -10.15411 -10.07918 -9.95914 -9.81787 -9.61003 -9.43206 -9.36258 -8.49947 -8.38426 -7.83003 -6.49237 -5.77178 -3.30907 1.31251 1.65722 1.75852 2.18532 2.51703 2.61919 2.86301 3.30137 3.38320 3.45532 3.46946 3.60729 4.11055 4.42539 4.44013 4.50843 4.59924 4.87507 4.97090 5.10708 5.23375 5.35509 5.36593 5.42077 5.45392 5.56077 5.60118 5.70278 5.95944 5.97176 6.14855 6.20802 6.32728 6.39772 6.56219 6.57497 6.64846 6.68022 6.79419 6.88755 6.99606 7.07222 7.26486 7.46395 7.50604 7.62708 7.70094 7.86287 8.45428 8.55047 9.23547 9.83955 10.50354 11.29257 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020311 B = 0.002765 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.214091 B =10122.437684 C =10808.790979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.206 4.206 3 C 0.197 3.803 4 N -0.596 5.596 5 C 0.603 3.397 6 O -0.558 6.558 7 C -0.329 4.329 8 C 0.111 3.889 9 N -0.301 5.301 10 N -0.307 5.307 11 C 0.001 3.999 12 C 0.029 3.971 13 N -0.575 5.575 14 H 0.444 0.556 15 C 0.317 3.683 16 C 0.149 3.851 17 C -0.136 4.136 18 C 0.148 3.852 19 N -0.588 5.588 20 C -0.263 4.263 21 H 0.059 0.941 22 C 0.015 3.985 23 N -0.892 5.892 24 Si 0.898 3.102 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.277 1.277 28 C 0.179 3.821 29 C -0.146 4.146 30 H 0.216 0.784 31 H 0.112 0.888 32 H 0.105 0.895 33 H 0.209 0.791 34 H 0.192 0.808 35 H 0.205 0.795 36 H 0.097 0.903 37 H 0.063 0.937 38 H 0.050 0.950 39 H 0.018 0.982 40 H 0.055 0.945 41 H 0.254 0.746 42 H 0.069 0.931 43 H 0.024 0.976 44 H 0.058 0.942 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.774 13.617 20.740 24.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.207 4.207 3 C 0.074 3.926 4 N -0.326 5.326 5 C 0.393 3.607 6 O -0.437 6.437 7 C -0.349 4.349 8 C -0.071 4.071 9 N -0.123 5.123 10 N -0.077 5.077 11 C -0.125 4.125 12 C -0.099 4.099 13 N -0.187 5.187 14 H 0.286 0.714 15 C 0.082 3.918 16 C 0.048 3.952 17 C -0.176 4.176 18 C 0.021 3.979 19 N -0.311 5.311 20 C -0.393 4.393 21 H 0.077 0.923 22 C -0.185 4.185 23 N -0.534 5.534 24 Si 0.727 3.273 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.203 1.203 28 C 0.052 3.948 29 C -0.186 4.186 30 H 0.233 0.767 31 H 0.129 0.871 32 H 0.122 0.878 33 H 0.225 0.775 34 H 0.209 0.791 35 H 0.222 0.778 36 H 0.115 0.885 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.036 0.964 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.087 0.913 43 H 0.042 0.958 44 H 0.077 0.923 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.834 14.114 21.453 25.693 hybrid contribution 0.126 -0.934 -1.399 1.687 sum 0.961 13.180 20.054 24.017 Atomic orbital electron populations 1.24910 0.95852 0.98891 1.00271 1.23490 0.94866 1.01422 1.00914 1.18891 0.83733 0.86794 1.03171 1.47922 1.64221 1.11792 1.08646 1.16955 0.76042 0.86783 0.80889 1.90756 1.51230 1.25139 1.76601 1.18474 1.12179 1.02227 1.02049 1.24542 0.97303 0.89836 0.95398 1.77507 1.07040 1.20637 1.07118 1.47047 1.27807 1.13614 1.19235 1.21583 0.96381 1.02688 0.91856 1.22286 1.03422 0.89550 0.94661 1.41571 1.34174 1.20661 1.22309 0.71408 1.19154 0.92375 0.86928 0.93364 1.21179 0.96814 0.88670 0.88568 1.22383 0.95339 1.01070 0.98787 1.20901 0.93635 0.93024 0.90323 1.43978 1.07479 1.78056 1.01541 1.19019 1.02180 1.35801 0.82258 0.92304 1.25322 0.98968 0.96037 0.98214 1.70059 1.15594 1.33632 1.34084 0.86381 0.77896 0.77428 0.85555 1.21302 1.21749 1.20250 1.20653 0.87710 0.91621 0.94786 1.22559 0.97454 1.01693 0.96888 0.76679 0.87057 0.87750 0.77490 0.79083 0.77816 0.88540 0.91862 0.93097 0.96383 0.92598 0.93608 0.91263 0.95820 0.92289 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.09 19.25 29.55 0.57 -1.52 16 2 C -0.21 -2.63 9.73 -37.12 -0.36 -2.99 16 3 C 0.20 2.52 5.11 -6.83 -0.03 2.49 16 4 N -0.60 -9.37 2.41 -170.94 -0.41 -9.79 16 5 C 0.60 10.02 7.59 -12.89 -0.10 9.93 16 6 O -0.56 -10.91 16.36 5.18 0.08 -10.83 16 7 C -0.33 -4.68 5.73 -104.83 -0.60 -5.29 16 8 C 0.11 1.41 9.59 -17.00 -0.16 1.25 16 9 N -0.30 -3.97 12.61 30.85 0.39 -3.58 16 10 N -0.31 -3.61 4.67 -11.88 -0.06 -3.66 16 11 C 0.00 0.01 11.91 -16.35 -0.19 -0.19 16 12 C 0.03 0.15 11.92 -16.54 -0.20 -0.05 16 13 N -0.58 -4.94 6.24 -11.98 -0.07 -5.02 16 14 H 0.44 3.21 8.96 -40.82 -0.37 2.84 16 15 C 0.32 3.98 8.48 -154.52 -1.31 2.67 16 16 C 0.15 2.73 2.48 -67.89 -0.17 2.56 16 17 C -0.14 -2.53 4.59 -26.61 -0.12 -2.65 16 18 C 0.15 3.26 6.50 -3.71 -0.02 3.23 16 19 N -0.59 -14.84 2.92 -172.10 -0.50 -15.34 16 20 C -0.26 -7.24 9.43 -15.06 -0.14 -7.38 16 21 H 0.06 1.61 7.89 -52.49 -0.41 1.20 16 22 C 0.02 0.43 4.85 -17.43 -0.08 0.35 16 23 N -0.89 -26.13 12.16 55.49 0.67 -25.45 16 24 Si 0.90 21.61 29.59 -169.99 -5.03 16.58 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 C 0.18 4.23 5.34 -3.55 -0.02 4.22 16 29 C -0.15 -2.77 5.29 -26.61 -0.14 -2.91 16 30 H 0.22 1.79 7.80 -54.11 -0.42 1.36 16 31 H 0.11 1.22 4.12 -51.93 -0.21 1.01 16 32 H 0.10 1.31 6.50 -51.93 -0.34 0.97 16 33 H 0.21 2.27 4.43 -52.49 -0.23 2.04 16 34 H 0.19 0.70 8.06 -52.49 -0.42 0.27 16 35 H 0.21 0.03 8.06 -52.49 -0.42 -0.40 16 36 H 0.10 1.99 6.91 -51.93 -0.36 1.63 16 37 H 0.06 1.18 6.67 -51.93 -0.35 0.83 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 41 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.07 1.79 6.98 -51.93 -0.36 1.43 16 43 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 1.09 6.78 -51.93 -0.35 0.74 16 45 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 368.07 15.07 5.55 5.55 Total: -1.00 -36.40 368.07 -7.96 -44.36 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -5.49 Total: 3.48 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -3.09 Total: 3.70 kcal Atomic # 7 Polarization: -62.86 SS G_CDS: 0.02 Total: -62.84 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.08 Total: -10.83 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.40 -7.96 -44.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699786676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 246.194 kcal (2) G-P(sol) polarization free energy of solvation -36.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 209.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 201.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds