Wall clock time and date at job start Sat Apr 11 2020 06:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47135 * 2 1 4 4 H 1.08997 * 109.47101 * 303.00578 * 3 2 1 5 5 C 1.50707 * 109.46878 * 183.01116 * 3 2 1 6 6 N 1.34771 * 119.99894 * 85.90063 * 5 3 2 7 7 O 1.21284 * 119.99768 * 265.89229 * 5 3 2 8 8 N 1.46893 * 109.47332 * 63.00891 * 3 2 1 9 9 C 1.48527 * 110.99693 * 32.37462 * 8 3 2 10 10 C 1.54308 * 104.69020 * 200.77304 * 9 8 3 11 11 H 1.09008 * 112.04885 * 262.01380 * 10 9 8 12 12 C 1.56213 * 109.26118 * 135.04153 * 10 9 8 13 13 N 1.47199 * 106.48291 * 228.87904 * 12 10 9 14 14 C 1.34780 * 126.70247 * 211.82964 * 13 12 10 15 15 O 1.21283 * 120.00080 * 180.02562 * 14 13 12 16 16 C 1.50701 * 119.99707 * 359.97438 * 14 13 12 17 17 S 1.80999 * 109.47066 * 180.02562 * 16 14 13 18 18 C 1.76204 * 100.00009 * 180.02562 * 17 16 14 19 19 H 1.08000 * 119.99789 * 359.97438 * 18 17 16 20 20 C 1.38791 * 119.99787 * 180.02562 * 18 17 16 21 21 N 1.31635 * 120.00373 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99832 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47058 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47132 * 119.99677 * 22 20 18 25 25 H 1.48504 * 109.46779 * 239.99511 * 22 20 18 26 26 C 1.47211 * 106.59842 * 31.82630 * 13 12 10 27 27 C 1.53753 * 106.40028 * 328.67907 * 26 13 12 28 28 H 1.09004 * 112.04572 * 255.55109 * 27 26 13 29 29 C 1.48521 * 111.00205 * 276.97268 * 8 3 2 30 30 H 1.08998 * 109.46929 * 49.21328 * 1 2 3 31 31 H 1.08996 * 109.47307 * 169.21396 * 1 2 3 32 32 H 1.09001 * 109.47241 * 289.21591 * 1 2 3 33 33 H 1.09000 * 109.47238 * 240.00117 * 2 1 3 34 34 H 1.09004 * 109.47602 * 120.00351 * 2 1 3 35 35 H 0.96999 * 120.00675 * 359.97438 * 6 5 3 36 36 H 0.97005 * 119.99612 * 179.97438 * 6 5 3 37 37 H 1.08998 * 110.39697 * 319.57132 * 9 8 3 38 38 H 1.08998 * 110.39391 * 81.97123 * 9 8 3 39 39 H 1.08998 * 109.60637 * 109.84388 * 12 10 9 40 40 H 1.09002 * 110.45132 * 348.36994 * 12 10 9 41 41 H 1.09000 * 109.46959 * 300.00513 * 16 14 13 42 42 H 1.08997 * 109.46992 * 60.00028 * 16 14 13 43 43 H 0.97001 * 120.00145 * 180.02562 * 21 20 18 44 44 H 1.09003 * 110.06636 * 209.44563 * 26 13 12 45 45 H 1.09004 * 110.06499 * 87.91548 * 26 13 12 46 46 H 1.09004 * 110.39383 * 278.02914 * 29 8 3 47 47 H 1.08999 * 110.39494 * 40.30683 * 29 8 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6333 1.9716 -0.8618 5 6 3.5452 1.4431 -0.0746 6 7 4.1605 1.3803 -1.2720 7 8 4.2027 1.5002 0.9429 8 7 1.6106 2.1137 1.2341 9 6 1.5437 1.1544 2.3660 10 6 0.6081 1.8258 3.3932 11 1 1.1635 2.3411 4.1770 12 6 -0.4073 0.7688 3.9333 13 7 -1.7409 1.3848 3.8394 14 6 -2.7867 1.1711 4.6624 15 8 -3.8367 1.7470 4.4708 16 6 -2.6515 0.2159 5.8201 17 16 -4.2148 0.1450 6.7296 18 6 -3.7838 -1.0091 7.9894 19 1 -2.7912 -1.4339 8.0160 20 6 -4.7202 -1.3729 8.9470 21 7 -5.9302 -0.8556 8.9144 22 14 -4.2635 -2.5970 10.2822 23 1 -2.8543 -3.0276 10.0980 24 1 -4.4161 -1.9571 11.6136 25 1 -5.1574 -3.7797 10.1962 26 6 -1.7094 2.2798 2.6710 27 6 -0.2662 2.7983 2.5601 28 1 -0.1744 3.8292 2.9021 29 6 0.2219 2.6246 1.1066 30 1 -0.3633 0.6713 -0.7781 31 1 -0.3634 -1.0095 -0.1923 32 1 -0.3634 0.3382 0.9704 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.6346 1.3344 -2.0858 36 1 5.1294 1.3811 -1.3201 37 1 1.1245 0.2044 2.0346 38 1 2.5341 1.0043 2.7957 39 1 -0.1750 0.5362 4.9725 40 1 -0.3707 -0.1379 3.3294 41 1 -2.4045 -0.7772 5.4448 42 1 -1.8593 0.5604 6.4848 43 1 -6.5845 -1.1096 9.5839 44 1 -2.3960 3.1133 2.8198 45 1 -1.9792 1.7284 1.7702 46 1 0.2158 3.5827 0.5868 47 1 -0.4014 1.9030 0.5785 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699985725.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:28 Heat of formation + Delta-G solvation = -41.688253 kcal Electronic energy + Delta-G solvation = -28076.121932 eV Core-core repulsion = 24192.845801 eV Total energy + Delta-G solvation = -3883.276131 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.35633 -39.73224 -38.53227 -36.44183 -34.17887 -33.37063 -32.42726 -31.25567 -30.82493 -29.25709 -27.53574 -26.30063 -25.49155 -23.93816 -22.72475 -21.91293 -20.51138 -19.76069 -19.19268 -17.81753 -17.71292 -17.15282 -16.96024 -16.27873 -16.12087 -15.68107 -15.25476 -15.04910 -14.80267 -14.55908 -14.44102 -13.99961 -13.81963 -13.53057 -13.19773 -12.84175 -12.68591 -12.57590 -12.39290 -12.32240 -12.12534 -11.94807 -11.79861 -11.58711 -11.51200 -11.13247 -11.07038 -11.04759 -11.00859 -10.74597 -10.69682 -10.17077 -10.06994 -9.80335 -9.42284 -9.07300 -8.66380 -8.56518 -8.23091 -6.50308 -6.21644 -3.92296 2.26976 2.86826 2.97170 3.04352 3.21874 3.26734 3.31697 3.60395 3.70839 4.08077 4.17704 4.20516 4.32681 4.35526 4.47790 4.59263 4.76336 4.78508 4.88300 4.98607 5.02859 5.03754 5.10429 5.13642 5.15107 5.32064 5.40830 5.46129 5.49679 5.52176 5.56015 5.60721 5.68876 5.81101 5.85075 5.86502 5.95227 6.02692 6.13662 6.34304 6.38560 6.44986 6.51771 6.94255 7.60086 7.68539 7.92091 8.35674 8.54199 9.23818 10.85826 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021830 B = 0.002239 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.316665 B =12503.983093 C =13098.452292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.152 4.152 3 C 0.055 3.945 4 H 0.100 0.900 5 C 0.527 3.473 6 N -0.859 5.859 7 O -0.524 6.524 8 N -0.485 5.485 9 C 0.026 3.974 10 C -0.098 4.098 11 H 0.101 0.899 12 C 0.105 3.895 13 N -0.624 5.624 14 C 0.552 3.448 15 O -0.515 6.515 16 C -0.147 4.147 17 S -0.061 6.061 18 C -0.534 4.534 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.112 3.888 27 C -0.100 4.100 28 H 0.097 0.903 29 C 0.017 3.983 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.399 0.601 36 H 0.401 0.599 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.081 0.919 45 H 0.064 0.936 46 H 0.082 0.918 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.187 3.837 -24.005 30.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.191 4.191 3 C -0.058 4.058 4 H 0.118 0.882 5 C 0.310 3.690 6 N -0.424 5.424 7 O -0.398 6.398 8 N -0.208 5.208 9 C -0.102 4.102 10 C -0.118 4.118 11 H 0.119 0.881 12 C -0.019 4.019 13 N -0.361 5.361 14 C 0.341 3.659 15 O -0.389 6.389 16 C -0.297 4.297 17 S 0.166 5.834 18 C -0.682 4.682 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.206 1.206 26 C -0.012 4.012 27 C -0.120 4.120 28 H 0.115 0.885 29 C -0.111 4.111 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.227 0.773 36 H 0.232 0.768 37 H 0.087 0.913 38 H 0.111 0.889 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.100 0.900 45 H 0.082 0.918 46 H 0.101 0.899 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 17.994 5.156 -23.265 29.860 hybrid contribution 1.223 -2.082 0.315 2.435 sum 19.216 3.074 -22.950 30.090 Atomic orbital electron populations 1.22221 0.94539 1.02777 1.02885 1.22143 0.97238 0.95847 1.03895 1.21802 0.92485 0.95565 0.95968 0.88218 1.20443 0.90208 0.74993 0.83332 1.43883 1.11287 1.78692 1.08539 1.90742 1.66978 1.47576 1.34498 1.65364 1.22187 1.31019 1.02278 1.23609 1.00975 0.94746 0.90851 1.23141 0.95139 0.95531 0.98015 0.88093 1.22596 0.81741 0.95108 1.02441 1.48527 1.12316 1.45811 1.29430 1.20031 0.81921 0.82078 0.81909 1.90711 1.26907 1.49207 1.72050 1.23510 1.07931 1.00165 0.98131 1.85401 1.08318 1.58684 1.31035 1.22895 1.01395 1.29411 1.14489 0.90869 1.24997 0.94475 0.96586 0.97569 1.70030 1.03784 1.41800 1.34666 0.86113 0.78590 0.80160 0.80613 1.19601 1.20547 1.20574 1.22050 0.96104 0.94315 0.88718 1.22672 0.93973 1.00626 0.94758 0.88506 1.23767 0.89186 1.01294 0.96825 0.91952 0.91740 0.90987 0.90853 0.89736 0.77262 0.76794 0.91348 0.88918 0.90033 0.91352 0.89321 0.89225 0.92237 0.90028 0.91805 0.89926 0.90865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.94 7.88 37.16 0.29 -0.65 16 2 C -0.15 -0.84 4.85 -26.73 -0.13 -0.97 16 3 C 0.05 0.35 2.39 -68.87 -0.16 0.19 16 4 H 0.10 0.44 7.89 -51.93 -0.41 0.03 16 5 C 0.53 4.24 7.30 -10.98 -0.08 4.16 16 6 N -0.86 -3.44 8.87 31.22 0.28 -3.17 16 7 O -0.52 -6.67 16.56 5.55 0.09 -6.58 16 8 N -0.49 -4.08 4.99 -223.56 -1.12 -5.20 16 9 C 0.03 0.23 4.60 -2.24 -0.01 0.21 16 10 C -0.10 -0.93 4.22 -87.13 -0.37 -1.30 16 11 H 0.10 0.98 8.14 -51.92 -0.42 0.56 16 12 C 0.11 1.15 6.44 -1.94 -0.01 1.14 16 13 N -0.62 -8.94 3.32 -170.06 -0.56 -9.50 16 14 C 0.55 10.69 7.90 -10.98 -0.09 10.61 16 15 O -0.51 -11.98 16.09 5.56 0.09 -11.89 16 16 C -0.15 -3.03 5.14 36.01 0.18 -2.85 16 17 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 18 C -0.53 -15.26 9.50 30.94 0.29 -14.97 16 19 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 20 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -26.24 13.22 55.49 0.73 -25.50 16 22 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 C 0.11 1.29 6.55 -3.26 -0.02 1.26 16 27 C -0.10 -0.92 4.02 -88.46 -0.36 -1.28 16 28 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 29 C 0.02 0.12 5.31 -2.24 -0.01 0.11 16 30 H 0.06 0.29 7.43 -51.93 -0.39 -0.10 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.51 4.46 -51.93 -0.23 0.28 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.58 5.96 -51.93 -0.31 0.27 16 35 H 0.40 0.37 8.83 -40.82 -0.36 0.01 16 36 H 0.40 1.39 8.93 -40.82 -0.36 1.02 16 37 H 0.07 0.54 2.92 -51.93 -0.15 0.39 16 38 H 0.09 0.97 7.56 -51.93 -0.39 0.58 16 39 H 0.08 0.90 7.31 -51.93 -0.38 0.52 16 40 H 0.07 0.67 7.19 -51.93 -0.37 0.29 16 41 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 42 H 0.09 1.73 7.86 -51.92 -0.41 1.32 16 43 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.08 1.05 7.92 -51.93 -0.41 0.64 16 45 H 0.06 0.66 6.72 -51.93 -0.35 0.31 16 46 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.07 0.48 2.95 -51.93 -0.15 0.33 16 LS Contribution 375.00 15.07 5.65 5.65 Total: -1.00 -37.48 375.00 -9.40 -46.88 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -6.76 Total: -0.93 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -0.57 Total: -2.33 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: -0.67 Total: -43.38 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: 0.18 Total: -18.47 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.48 -9.40 -46.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699985725.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.190 kcal (2) G-P(sol) polarization free energy of solvation -37.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds