Wall clock time and date at job start Sat Apr 11 2020 06:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47018 * 2 1 4 4 H 1.08997 * 109.46790 * 55.00427 * 3 2 1 5 5 C 1.50700 * 109.46807 * 174.99785 * 3 2 1 6 6 N 1.34780 * 120.00542 * 300.00127 * 5 3 2 7 7 O 1.21282 * 119.99638 * 120.00259 * 5 3 2 8 8 N 1.46894 * 109.47409 * 294.99912 * 3 2 1 9 9 C 1.47829 * 111.00137 * 297.46187 * 8 3 2 10 10 C 1.54191 * 107.26603 * 214.65410 * 9 8 3 11 11 H 1.08997 * 112.67398 * 236.64960 * 10 9 8 12 12 C 1.53805 * 108.41845 * 111.22311 * 10 9 8 13 13 N 1.46490 * 108.30831 * 234.83511 * 12 10 9 14 14 C 1.34775 * 125.29243 * 178.12879 * 13 12 10 15 15 O 1.21285 * 119.99819 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00224 * 179.97438 * 14 13 12 17 17 S 1.80998 * 109.47097 * 180.02562 * 16 14 13 18 18 C 1.76198 * 99.99866 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00095 * 359.97438 * 18 17 16 20 20 C 1.38805 * 119.99772 * 180.02562 * 18 17 16 21 21 N 1.31629 * 120.00096 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99906 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46839 * 59.99797 * 22 20 18 24 24 H 1.48502 * 109.47164 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47254 * 300.00005 * 22 20 18 26 26 C 1.46642 * 109.42326 * 358.10949 * 13 12 10 27 27 C 1.53082 * 107.06872 * 17.54162 * 26 13 12 28 28 H 1.09003 * 113.16833 * 211.12835 * 27 26 13 29 29 C 1.48568 * 111.00012 * 179.97438 * 8 3 2 30 30 H 1.08997 * 109.47204 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46959 * 299.99903 * 1 2 3 32 32 H 1.09002 * 109.46976 * 59.99304 * 1 2 3 33 33 H 1.09001 * 109.47510 * 240.00621 * 2 1 3 34 34 H 1.08999 * 109.47211 * 119.99780 * 2 1 3 35 35 H 0.96998 * 119.99636 * 359.97438 * 6 5 3 36 36 H 0.96994 * 119.99788 * 180.02562 * 6 5 3 37 37 H 1.09007 * 109.88387 * 334.06719 * 9 8 3 38 38 H 1.09000 * 109.88675 * 95.08240 * 9 8 3 39 39 H 1.09001 * 109.71326 * 354.56242 * 12 10 9 40 40 H 1.09003 * 109.71369 * 115.09803 * 12 10 9 41 41 H 1.09003 * 109.47085 * 300.00424 * 16 14 13 42 42 H 1.08998 * 109.46922 * 60.00485 * 16 14 13 43 43 H 0.96996 * 119.99871 * 180.02562 * 21 20 18 44 44 H 1.09001 * 109.92230 * 136.83495 * 26 13 12 45 45 H 1.09001 * 109.91981 * 258.12787 * 26 13 12 46 46 H 1.09002 * 110.68652 * 278.40769 * 29 8 3 47 47 H 1.08999 * 110.68534 * 41.41287 * 29 8 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1239 6 7 4.1298 0.8911 1.2032 7 8 4.2216 1.9436 -0.7477 8 7 1.6514 2.0993 -1.2552 9 6 2.2731 1.4305 -2.4177 10 6 2.5889 2.5227 -3.4592 11 1 2.1243 2.3284 -4.4259 12 6 4.1163 2.6756 -3.5552 13 7 4.4539 4.0814 -3.3189 14 6 5.7024 4.5880 -3.2891 15 8 6.6564 3.8605 -3.4673 16 6 5.9131 6.0585 -3.0356 17 16 7.6851 6.4266 -3.0570 18 6 7.6413 8.1598 -2.7430 19 1 6.6940 8.6601 -2.6065 20 6 8.8244 8.8823 -2.6720 21 7 9.9790 8.2726 -2.8388 22 14 8.7780 10.7199 -2.3398 23 1 8.1258 10.9697 -1.0291 24 1 10.1637 11.2532 -2.3123 25 1 8.0075 11.3977 -3.4131 26 6 3.2221 4.8519 -3.1204 27 6 2.1116 3.8487 -2.7979 28 1 1.1298 4.1692 -3.1464 29 6 2.1302 3.5053 -1.2908 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5140 -0.8899 33 1 1.8934 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.5862 0.4922 1.9004 36 1 5.0965 0.8926 1.2830 37 1 3.1936 0.9335 -2.1110 38 1 1.5813 0.7015 -2.8397 39 1 4.5964 2.0507 -2.8021 40 1 4.4540 2.3782 -4.5480 41 1 5.4128 6.6365 -3.8126 42 1 5.4986 6.3224 -2.0627 43 1 10.8057 8.7775 -2.7889 44 1 3.3477 5.5452 -2.2887 45 1 2.9760 5.3997 -4.0300 46 1 1.4527 4.1569 -0.7387 47 1 3.1420 3.5777 -0.8920 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699985726.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:30 Heat of formation + Delta-G solvation = -54.070172 kcal Electronic energy + Delta-G solvation = -28738.063191 eV Core-core repulsion = 24854.250140 eV Total energy + Delta-G solvation = -3883.813052 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.39375 -39.57546 -37.95463 -36.11003 -34.47707 -33.23053 -32.37539 -31.27430 -30.53757 -29.03118 -27.13917 -26.16626 -25.40831 -23.74215 -22.56522 -21.65235 -20.38502 -19.82159 -19.09627 -17.89759 -17.56067 -17.26148 -16.57890 -16.15736 -15.81904 -15.29328 -14.89941 -14.78871 -14.75588 -14.62950 -14.24605 -13.99386 -13.73456 -13.41683 -12.92920 -12.70987 -12.55207 -12.51691 -12.38850 -12.18735 -12.02408 -11.81600 -11.60257 -11.34242 -11.19743 -11.02076 -11.00125 -10.98461 -10.83757 -10.77686 -10.70324 -10.48406 -9.79443 -9.75632 -9.21292 -9.00772 -8.52847 -8.17968 -8.14863 -6.42833 -6.15981 -3.85730 2.31142 3.09132 3.22314 3.26262 3.28050 3.30329 3.34341 3.60635 3.77434 4.14506 4.26076 4.38274 4.40937 4.51005 4.62794 4.68336 4.94300 5.09342 5.11307 5.14186 5.18555 5.22222 5.27758 5.34137 5.35674 5.54037 5.57620 5.64818 5.68157 5.70036 5.71985 5.79214 5.87882 5.95388 6.00034 6.07076 6.09788 6.23957 6.24312 6.52788 6.58101 6.62462 6.74706 7.03100 7.64366 7.91093 8.01654 8.40545 8.78113 9.28756 10.91446 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019349 B = 0.002635 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.729572 B =10624.184618 C =10894.692845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.110 4.110 3 C 0.054 3.946 4 H 0.109 0.891 5 C 0.480 3.520 6 N -0.855 5.855 7 O -0.516 6.516 8 N -0.486 5.486 9 C 0.037 3.963 10 C -0.100 4.100 11 H 0.096 0.904 12 C 0.113 3.887 13 N -0.612 5.612 14 C 0.548 3.452 15 O -0.518 6.518 16 C -0.144 4.144 17 S -0.061 6.061 18 C -0.534 4.534 19 H 0.071 0.929 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.111 3.889 27 C -0.092 4.092 28 H 0.103 0.897 29 C 0.026 3.974 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.398 0.602 36 H 0.401 0.599 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.054 0.946 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.268 0.732 44 H 0.073 0.927 45 H 0.065 0.935 46 H 0.078 0.922 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.647 -17.261 7.535 30.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.149 4.149 3 C -0.059 4.059 4 H 0.127 0.873 5 C 0.263 3.737 6 N -0.419 5.419 7 O -0.391 6.391 8 N -0.208 5.208 9 C -0.091 4.091 10 C -0.120 4.120 11 H 0.114 0.886 12 C -0.010 4.010 13 N -0.349 5.349 14 C 0.336 3.664 15 O -0.392 6.392 16 C -0.295 4.295 17 S 0.165 5.835 18 C -0.682 4.682 19 H 0.089 0.911 20 C -0.136 4.136 21 N -0.504 5.504 22 Si 0.745 3.255 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.013 4.013 27 C -0.112 4.112 28 H 0.121 0.879 29 C -0.101 4.101 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.226 0.774 36 H 0.232 0.768 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.072 0.928 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.084 0.916 46 H 0.096 0.904 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -22.238 -17.957 6.570 29.328 hybrid contribution -0.135 1.879 1.018 2.141 sum -22.373 -16.078 7.588 28.577 Atomic orbital electron populations 1.21661 0.94062 1.01366 1.02961 1.21528 0.97757 0.93035 1.02542 1.22104 0.89536 0.98091 0.96149 0.87339 1.22012 0.92329 0.77509 0.81857 1.44079 1.11732 1.62273 1.23834 1.90818 1.65680 1.43661 1.38979 1.65161 1.52708 1.02516 1.00429 1.23126 0.98959 0.96471 0.90498 1.22830 0.95345 0.94927 0.98885 0.88604 1.21965 0.93590 0.84020 1.01422 1.48013 1.05264 1.08706 1.72904 1.19898 0.80734 0.89745 0.75974 1.90691 1.39496 1.60863 1.48151 1.23491 1.07722 0.94080 1.04216 1.85389 0.95093 1.09207 1.93766 1.22830 0.95493 0.93325 1.56560 0.91057 1.24991 0.94555 0.99302 0.94781 1.70016 0.97481 1.36380 1.46487 0.86231 0.77330 0.83055 0.78909 1.19989 1.20836 1.19939 1.21654 0.84104 0.94395 1.01195 1.22684 0.98607 0.94605 0.95289 0.87870 1.23515 1.01344 0.88877 0.96340 0.92955 0.92805 0.91128 0.91224 0.91430 0.77368 0.76771 0.91122 0.90907 0.89386 0.92789 0.89489 0.89599 0.92196 0.90834 0.91639 0.90406 0.90173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.71 9.80 37.16 0.36 -0.35 16 2 C -0.11 -0.59 5.26 -26.73 -0.14 -0.73 16 3 C 0.05 0.40 2.25 -68.86 -0.15 0.24 16 4 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 5 C 0.48 4.64 6.30 -10.98 -0.07 4.57 16 6 N -0.85 -5.58 8.74 31.22 0.27 -5.31 16 7 O -0.52 -7.37 10.24 5.56 0.06 -7.31 16 8 N -0.49 -4.29 4.75 -224.02 -1.06 -5.35 16 9 C 0.04 0.36 4.39 -2.69 -0.01 0.35 16 10 C -0.10 -1.07 4.10 -88.15 -0.36 -1.43 16 11 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 12 C 0.11 1.69 5.99 -3.63 -0.02 1.66 16 13 N -0.61 -10.32 3.31 -173.03 -0.57 -10.89 16 14 C 0.55 11.91 7.85 -10.99 -0.09 11.83 16 15 O -0.52 -13.35 16.17 5.55 0.09 -13.26 16 16 C -0.14 -3.23 5.19 36.01 0.19 -3.05 16 17 S -0.06 -1.76 20.57 -107.50 -2.21 -3.97 16 18 C -0.53 -15.76 9.50 30.94 0.29 -15.47 16 19 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 20 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 21 N -0.87 -26.90 13.22 55.49 0.73 -26.17 16 22 Si 0.92 21.94 29.55 -169.99 -5.02 16.92 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 26 C 0.11 1.41 5.86 -3.92 -0.02 1.39 16 27 C -0.09 -0.94 4.07 -88.32 -0.36 -1.30 16 28 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 29 C 0.03 0.27 5.42 -2.07 -0.01 0.26 16 30 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.44 7.75 -51.93 -0.40 0.03 16 33 H 0.07 0.45 7.03 -51.93 -0.36 0.08 16 34 H 0.07 0.25 7.43 -51.93 -0.39 -0.14 16 35 H 0.40 1.27 8.19 -40.82 -0.33 0.93 16 36 H 0.40 2.83 8.93 -40.82 -0.36 2.47 16 37 H 0.07 0.82 4.51 -51.93 -0.23 0.59 16 38 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 39 H 0.09 1.51 4.91 -51.93 -0.25 1.25 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.09 1.81 8.14 -51.91 -0.42 1.38 16 42 H 0.09 1.81 7.88 -51.92 -0.41 1.40 16 43 H 0.27 7.72 8.31 -40.82 -0.34 7.38 16 44 H 0.07 0.94 7.45 -51.93 -0.39 0.55 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.08 1.08 5.21 -51.93 -0.27 0.81 16 LS Contribution 376.11 15.07 5.67 5.67 Total: -1.00 -37.84 376.11 -9.72 -47.56 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -7.18 Total: 2.10 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -0.49 Total: 0.02 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: -0.63 Total: -47.72 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: 0.15 Total: -20.57 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: -1.76 SS G_CDS: -2.21 Total: -3.97 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.84 -9.72 -47.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699985726.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.509 kcal (2) G-P(sol) polarization free energy of solvation -37.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds