Wall clock time and date at job start Sat Apr 11 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50695 * 109.47398 * 2 1 4 4 C 1.34329 * 126.44362 * 89.97390 * 3 2 1 5 5 N 1.34480 * 107.66818 * 179.76468 * 4 3 2 6 6 C 1.30257 * 108.70024 * 0.42188 * 5 4 3 7 7 C 1.50703 * 125.61722 * 179.83421 * 6 5 4 8 8 N 1.46895 * 109.46874 * 89.69723 * 7 6 5 9 9 C 1.46900 * 111.00197 * 66.04270 * 8 7 6 10 10 C 1.46902 * 111.00186 * 189.99595 * 8 7 6 11 11 H 1.09002 * 109.46719 * 54.99999 * 10 8 7 12 12 C 1.52997 * 109.47094 * 295.00225 * 10 8 7 13 13 C 1.52992 * 109.47181 * 174.99766 * 10 8 7 14 14 N 1.46499 * 109.47658 * 305.00169 * 13 10 8 15 15 C 1.34782 * 120.00273 * 180.02562 * 14 13 10 16 16 O 1.21278 * 119.99688 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99764 * 179.97438 * 15 14 13 18 18 S 1.81002 * 109.46992 * 179.97438 * 17 15 14 19 19 C 1.76191 * 99.99976 * 180.02562 * 18 17 15 20 20 H 1.08001 * 120.00579 * 359.97438 * 19 18 17 21 21 C 1.38804 * 120.00162 * 180.02562 * 19 18 17 22 22 N 1.31628 * 119.99673 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00286 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46803 * 59.99889 * 23 21 19 25 25 H 1.48500 * 109.47147 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47070 * 300.00066 * 23 21 19 27 27 O 1.33963 * 108.75797 * 359.57570 * 6 5 4 28 28 H 1.08996 * 109.47532 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47167 * 300.00412 * 1 2 3 30 30 H 1.09006 * 109.46478 * 60.00019 * 1 2 3 31 31 H 1.09006 * 109.47129 * 239.99356 * 2 1 3 32 32 H 1.09006 * 109.46478 * 119.99981 * 2 1 3 33 33 H 1.08000 * 126.16460 * 0.02562 * 4 3 2 34 34 H 1.08999 * 109.47257 * 329.69860 * 7 6 5 35 35 H 1.09001 * 109.46577 * 209.69714 * 7 6 5 36 36 H 1.08997 * 109.47292 * 183.95205 * 9 8 7 37 37 H 1.09002 * 109.47267 * 303.95496 * 9 8 7 38 38 H 1.09000 * 109.47210 * 63.95721 * 9 8 7 39 39 H 1.09002 * 109.47153 * 299.99508 * 12 10 8 40 40 H 1.09001 * 109.46832 * 179.97438 * 12 10 8 41 41 H 1.09004 * 109.47261 * 59.99681 * 12 10 8 42 42 H 1.09001 * 109.47563 * 65.00559 * 13 10 8 43 43 H 1.09004 * 109.47313 * 185.00214 * 13 10 8 44 44 H 0.97002 * 119.99938 * 0.02562 * 14 13 10 45 45 H 1.09000 * 109.46972 * 300.00080 * 17 15 14 46 46 H 1.09004 * 109.46940 * 59.99787 * 17 15 14 47 47 H 0.96997 * 119.99965 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2979 2.1732 1.0806 5 7 2.7275 3.3718 0.6478 6 6 2.7220 3.3720 -0.6548 7 6 3.1298 4.5260 -1.5340 8 7 4.5682 4.4396 -1.8194 9 6 4.8733 3.2553 -2.6331 10 6 5.0502 5.6646 -2.4713 11 1 4.7949 6.5278 -1.8566 12 6 4.3914 5.8042 -3.8451 13 6 6.5690 5.5893 -2.6392 14 7 7.1923 5.3362 -1.3378 15 6 8.5325 5.2306 -1.2416 16 8 9.2225 5.3457 -2.2323 17 6 9.1737 4.9709 0.0973 18 16 10.9705 4.8816 -0.1014 19 6 11.4482 4.5788 1.5672 20 1 10.6966 4.5048 2.3393 21 6 12.7907 4.4363 1.8899 22 7 13.7068 4.5269 0.9492 23 14 13.2972 4.1159 3.6592 24 1 12.6788 2.8504 4.1296 25 1 14.7759 4.0043 3.7383 26 1 12.8395 5.2390 4.5162 27 8 2.2993 2.1754 -1.0839 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8901 31 1 1.8933 -0.5140 -0.8900 32 1 1.8932 -0.5139 0.8901 33 1 2.1902 1.8689 2.1112 34 1 2.9165 5.4650 -1.0233 35 1 2.5708 4.4857 -2.4689 36 1 5.9517 3.1769 -2.7707 37 1 4.5057 2.3624 -2.1274 38 1 4.3888 3.3477 -3.6052 39 1 4.6466 4.9410 -4.4599 40 1 4.7487 6.7134 -4.3286 41 1 3.3093 5.8579 -3.7255 42 1 6.8191 4.7801 -3.3253 43 1 6.9374 6.5332 -3.0410 44 1 6.6405 5.2446 -0.5453 45 1 8.9233 5.7802 0.7831 46 1 8.8056 4.0269 0.4993 47 1 14.6450 4.4276 1.1747 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700479614.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:45 Heat of formation + Delta-G solvation = -12.694594 kcal Electronic energy + Delta-G solvation = -26943.803057 eV Core-core repulsion = 23061.784185 eV Total energy + Delta-G solvation = -3882.018872 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.61824 -39.63359 -38.35913 -35.00097 -34.88170 -34.12541 -32.37144 -31.88606 -29.82835 -29.28341 -27.66090 -26.17070 -25.45230 -25.04344 -23.85287 -22.22397 -21.14356 -20.26285 -20.05494 -17.77459 -17.42442 -17.35360 -16.32236 -16.20967 -16.11054 -15.50202 -15.22089 -14.96217 -14.75343 -14.70758 -14.53486 -14.00133 -13.77897 -13.58974 -13.29757 -13.18060 -12.99650 -12.82133 -12.62796 -12.44581 -12.39565 -12.20567 -11.98951 -11.85061 -11.69605 -11.58654 -11.45906 -11.12169 -10.99049 -10.98260 -10.71385 -10.70183 -9.76142 -9.30336 -9.05644 -9.00557 -8.77834 -8.69440 -8.16624 -6.42982 -6.15893 -3.85600 1.11009 2.25495 2.42444 3.12134 3.22427 3.27943 3.31460 3.35820 3.50242 3.73353 3.89241 4.26521 4.28370 4.41993 4.48648 4.61558 4.63749 4.69117 4.81993 4.88836 4.93570 5.00956 5.09225 5.18990 5.19834 5.23138 5.26670 5.30553 5.32130 5.39529 5.48645 5.57853 5.63980 5.64902 5.76158 5.77359 5.79578 5.91873 6.01224 6.02833 6.26252 6.48722 6.53207 6.80274 7.49745 7.65449 7.91388 8.41261 8.75605 9.29345 10.91509 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010822 B = 0.002354 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.746499 B =11891.300898 C =13904.979662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.039 4.039 3 C -0.045 4.045 4 C -0.040 4.040 5 N -0.462 5.462 6 C 0.195 3.805 7 C 0.152 3.848 8 N -0.528 5.528 9 C 0.014 3.986 10 C 0.071 3.929 11 H 0.097 0.903 12 C -0.188 4.188 13 C 0.131 3.869 14 N -0.728 5.728 15 C 0.531 3.469 16 O -0.525 6.525 17 C -0.151 4.151 18 S -0.062 6.062 19 C -0.534 4.534 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.869 5.869 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 O -0.202 6.202 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.182 0.818 34 H 0.117 0.883 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.036 0.964 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.406 0.594 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.612 -4.434 -6.011 31.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.076 4.076 3 C -0.098 4.098 4 C -0.178 4.178 5 N -0.190 5.190 6 C -0.013 4.013 7 C 0.024 3.976 8 N -0.252 5.252 9 C -0.134 4.134 10 C -0.038 4.038 11 H 0.115 0.885 12 C -0.247 4.247 13 C 0.006 3.994 14 N -0.383 5.383 15 C 0.317 3.683 16 O -0.400 6.400 17 C -0.302 4.302 18 S 0.165 5.835 19 C -0.682 4.682 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.504 5.504 23 Si 0.744 3.256 24 H -0.200 1.200 25 H -0.209 1.209 26 H -0.199 1.199 27 O -0.089 6.089 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.199 0.801 34 H 0.135 0.865 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.055 0.945 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.241 0.759 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -28.830 -3.785 -6.955 29.898 hybrid contribution -1.357 -0.993 1.622 2.337 sum -30.188 -4.778 -5.333 31.025 Atomic orbital electron populations 1.21800 0.93713 1.02595 1.02658 1.20070 0.96403 0.86559 1.04587 1.23475 1.05620 0.96131 0.84613 1.23105 1.04337 0.90023 1.00374 1.70442 1.16927 1.22578 1.09097 1.25941 0.99047 0.85938 0.90326 1.20394 0.89303 0.91947 0.95992 1.62109 1.12865 1.03488 1.46780 1.22562 1.02991 0.92331 0.95522 1.22042 0.94806 0.92417 0.94500 0.88525 1.22429 1.00957 1.03517 0.97789 1.21293 0.89606 1.01856 0.86662 1.45854 1.06824 1.75096 1.10482 1.20285 0.81505 0.75617 0.90880 1.90688 1.62252 1.48671 1.38396 1.23509 1.05473 1.04581 0.96644 1.85337 0.91225 1.93961 1.13000 1.22841 0.94980 1.56754 0.93655 0.90998 1.24989 0.95428 0.94770 0.98433 1.70012 1.01124 1.46674 1.32598 0.86233 0.77436 0.78934 0.82950 1.19964 1.20858 1.19941 1.84380 1.64185 1.23647 1.36735 0.91319 0.92035 0.92381 0.89852 0.88368 0.80085 0.86491 0.91624 0.90028 0.91620 0.94509 0.91596 0.90982 0.91995 0.91625 0.90933 0.75886 0.89301 0.89322 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.89 37.16 0.37 -0.31 16 2 C -0.04 -0.21 6.49 -27.89 -0.18 -0.39 16 3 C -0.05 -0.41 6.64 -35.69 -0.24 -0.64 16 4 C -0.04 -0.40 11.80 -17.77 -0.21 -0.61 16 5 N -0.46 -5.55 11.29 -11.10 -0.13 -5.68 16 6 C 0.19 2.03 6.92 -12.94 -0.09 1.94 16 7 C 0.15 1.18 5.03 -4.98 -0.03 1.15 16 8 N -0.53 -4.64 4.18 -236.34 -0.99 -5.63 16 9 C 0.01 0.13 8.64 60.06 0.52 0.65 16 10 C 0.07 0.55 2.50 -67.72 -0.17 0.38 16 11 H 0.10 0.68 8.03 -51.93 -0.42 0.26 16 12 C -0.19 -1.13 8.50 37.16 0.32 -0.81 16 13 C 0.13 1.49 4.69 -4.05 -0.02 1.47 16 14 N -0.73 -10.26 5.39 -60.30 -0.32 -10.59 16 15 C 0.53 10.30 7.85 -10.98 -0.09 10.21 16 16 O -0.52 -12.19 15.86 5.56 0.09 -12.11 16 17 C -0.15 -3.21 6.16 36.01 0.22 -2.99 16 18 S -0.06 -1.73 20.57 -107.50 -2.21 -3.94 16 19 C -0.53 -15.60 9.50 30.94 0.29 -15.31 16 20 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 22 N -0.87 -26.65 13.22 55.49 0.73 -25.91 16 23 Si 0.92 21.87 29.55 -169.99 -5.02 16.84 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 27 O -0.20 -2.09 10.04 5.38 0.05 -2.03 16 28 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.18 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.12 0.78 8.00 -51.93 -0.42 0.36 16 35 H 0.07 0.40 6.94 -51.93 -0.36 0.04 16 36 H 0.08 0.88 6.44 -51.93 -0.33 0.54 16 37 H 0.07 0.68 6.60 -51.93 -0.34 0.33 16 38 H 0.04 0.28 6.28 -51.93 -0.33 -0.04 16 39 H 0.07 0.42 6.39 -51.93 -0.33 0.09 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.30 6.75 -51.93 -0.35 -0.05 16 42 H 0.07 0.81 6.70 -51.93 -0.35 0.46 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.41 5.14 8.14 -40.82 -0.33 4.81 16 45 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 46 H 0.09 1.78 8.14 -51.91 -0.42 1.36 16 47 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 399.26 15.07 6.02 6.02 Total: -1.00 -36.65 399.26 -8.51 -45.15 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -7.33 Total: 1.11 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 0.61 Total: -3.24 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: -0.71 Total: -47.81 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: 0.14 Total: -14.14 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.65 -8.51 -45.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700479614.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.457 kcal (2) G-P(sol) polarization free energy of solvation -36.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds