Wall clock time and date at job start Sat Apr 11 2020 06:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47433 * 2 1 4 4 C 1.50698 * 109.47586 * 120.00502 * 2 1 3 5 5 N 1.30947 * 122.90000 * 306.75143 * 4 2 1 6 6 C 1.29433 * 117.36107 * 180.34380 * 5 4 2 7 7 S 1.70951 * 110.39392 * 359.71034 * 6 5 4 8 8 C 1.35656 * 122.91278 * 126.55438 * 4 2 1 9 9 C 1.46688 * 126.12565 * 359.97032 * 8 4 2 10 10 O 1.21687 * 120.00174 * 354.54722 * 9 8 4 11 11 N 1.34776 * 120.00025 * 174.55133 * 9 8 4 12 12 C 1.46506 * 119.99850 * 179.71845 * 11 9 8 13 13 C 1.52996 * 109.46878 * 180.27672 * 12 11 9 14 14 O 1.42902 * 109.47493 * 65.00053 * 13 12 11 15 15 C 1.42899 * 114.00300 * 179.97438 * 14 13 12 16 16 C 1.52997 * 109.47349 * 180.02562 * 15 14 13 17 17 N 1.46504 * 109.47076 * 64.99563 * 16 15 14 18 18 C 1.46497 * 120.00342 * 270.00388 * 17 16 15 19 19 C 1.36944 * 119.99418 * 90.00170 * 17 16 15 20 20 H 1.08000 * 120.00285 * 23.74573 * 19 17 16 21 21 C 1.38809 * 119.99763 * 203.74291 * 19 17 16 22 22 N 1.31625 * 120.00146 * 10.93487 * 21 19 17 23 23 Si 1.86803 * 120.00018 * 190.93979 * 21 19 17 24 24 H 1.48506 * 109.46949 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47240 * 119.99727 * 23 21 19 26 26 H 1.48500 * 109.47014 * 239.99964 * 23 21 19 27 27 H 1.09008 * 109.46427 * 299.99786 * 1 2 3 28 28 H 1.09000 * 109.47376 * 59.99709 * 1 2 3 29 29 H 1.09003 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47111 * 240.00174 * 2 1 3 31 31 H 1.08994 * 109.46715 * 60.00282 * 3 2 1 32 32 H 1.09002 * 109.47004 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47077 * 300.00474 * 3 2 1 34 34 H 1.08000 * 124.80242 * 179.72874 * 6 5 4 35 35 H 0.97003 * 119.99728 * 359.97438 * 11 9 8 36 36 H 1.08995 * 109.47073 * 300.27891 * 12 11 9 37 37 H 1.09000 * 109.46439 * 60.27969 * 12 11 9 38 38 H 1.09002 * 109.47004 * 185.00624 * 13 12 11 39 39 H 1.09005 * 109.47084 * 304.99934 * 13 12 11 40 40 H 1.09003 * 109.46749 * 300.00225 * 15 14 13 41 41 H 1.08996 * 109.46800 * 60.00037 * 15 14 13 42 42 H 1.08990 * 109.47278 * 185.00116 * 16 15 14 43 43 H 1.09000 * 109.46951 * 305.00199 * 16 15 14 44 44 H 1.09000 * 109.47205 * 95.07345 * 18 17 16 45 45 H 1.09004 * 109.47021 * 215.07577 * 18 17 16 46 46 H 1.08997 * 109.46934 * 335.07238 * 18 17 16 47 47 H 0.97005 * 119.99630 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2303 5 7 1.6493 -0.3926 2.4415 6 6 2.1545 -1.0697 3.4221 7 16 3.2324 -2.2584 2.8324 8 6 2.9176 -1.7371 1.1788 9 6 3.5114 -2.3070 -0.0355 10 8 3.1442 -1.9230 -1.1302 11 7 4.4635 -3.2560 0.0614 12 6 5.0521 -3.8295 -1.1515 13 6 6.0941 -4.8808 -0.7646 14 8 5.4481 -5.9719 -0.1055 15 6 6.3370 -7.0150 0.2992 16 6 5.5409 -8.1243 0.9895 17 7 4.6296 -8.7443 0.0244 18 6 3.2744 -8.2154 -0.1478 19 6 5.0449 -9.8183 -0.7169 20 1 5.8482 -10.4443 -0.3576 21 6 4.4331 -10.1024 -1.9301 22 7 3.6099 -9.2301 -2.4723 23 14 4.7780 -11.7228 -2.7933 24 1 5.7316 -12.5222 -1.9828 25 1 3.5095 -12.4780 -2.9535 26 1 5.3675 -11.4559 -4.1298 27 1 -0.3632 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.9271 -0.9070 4.4653 35 1 4.7564 -3.5618 0.9341 36 1 4.2694 -4.2964 -1.7494 37 1 5.5302 -3.0401 -1.7315 38 1 6.5948 -5.2436 -1.6623 39 1 6.8287 -4.4347 -0.0941 40 1 6.8423 -7.4219 -0.5767 41 1 7.0768 -6.6134 0.9917 42 1 6.2274 -8.8771 1.3766 43 1 4.9651 -7.7002 1.8121 44 1 3.2614 -7.5136 -0.9817 45 1 2.5873 -9.0364 -0.3530 46 1 2.9660 -7.7028 0.7634 47 1 3.1822 -9.4288 -3.3200 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700704487.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:50 Heat of formation + Delta-G solvation = -17.673992 kcal Electronic energy + Delta-G solvation = -27603.094393 eV Core-core repulsion = 23720.859599 eV Total energy + Delta-G solvation = -3882.234795 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.69966 -39.24028 -37.64014 -35.51415 -35.00446 -34.40363 -31.56353 -30.89812 -29.29491 -27.82767 -27.22212 -26.01242 -25.69489 -23.23979 -22.96851 -22.16238 -21.36908 -20.35591 -19.63403 -18.10256 -17.09029 -16.86212 -16.28605 -16.15403 -15.53953 -15.40703 -15.02281 -14.68226 -14.46590 -14.40567 -14.26048 -13.87937 -13.68072 -13.36004 -13.16985 -12.99857 -12.61192 -12.56256 -12.22348 -12.17501 -11.60745 -11.44555 -11.27474 -11.20487 -11.03307 -10.92581 -10.86324 -10.77368 -10.51772 -10.18013 -10.06880 -9.89713 -9.81803 -9.78998 -9.68422 -9.19764 -9.05132 -9.02630 -8.49837 -6.66080 -5.65102 -3.13234 0.02517 0.95422 1.33038 2.25464 3.01039 3.07906 3.39093 3.46095 3.47975 3.88613 4.11583 4.53732 4.59294 4.72377 4.77766 5.08646 5.09455 5.16605 5.23958 5.32465 5.44857 5.56062 5.57257 5.62673 5.66569 5.71345 5.76470 5.85013 5.96850 6.00247 6.06146 6.14902 6.18064 6.21654 6.26007 6.46588 6.53334 6.75652 6.94879 7.28541 7.42316 7.50359 7.75351 7.83711 7.98332 8.05599 8.46521 9.30584 9.94068 10.44865 11.38285 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016510 B = 0.002464 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.508103 B =11361.986037 C =11747.254612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.051 4.051 3 C -0.135 4.135 4 C 0.153 3.847 5 N -0.469 5.469 6 C 0.032 3.968 7 S 0.166 5.834 8 C -0.291 4.291 9 C 0.597 3.403 10 O -0.523 6.523 11 N -0.711 5.711 12 C 0.125 3.875 13 C 0.049 3.951 14 O -0.367 6.367 15 C 0.042 3.958 16 C 0.153 3.847 17 N -0.596 5.596 18 C 0.174 3.826 19 C -0.257 4.257 20 H 0.066 0.934 21 C 0.003 3.997 22 N -0.901 5.901 23 Si 0.901 3.099 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.291 1.291 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.127 0.873 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.205 0.795 35 H 0.401 0.599 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.044 0.956 40 H 0.049 0.951 41 H 0.025 0.975 42 H 0.058 0.942 43 H 0.043 0.957 44 H 0.034 0.966 45 H 0.034 0.966 46 H -0.007 1.007 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.036 19.631 11.229 22.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.071 4.071 3 C -0.193 4.193 4 C 0.015 3.985 5 N -0.182 5.182 6 C -0.264 4.264 7 S 0.421 5.579 8 C -0.415 4.415 9 C 0.382 3.618 10 O -0.402 6.402 11 N -0.362 5.362 12 C 0.002 3.998 13 C -0.028 4.028 14 O -0.286 6.286 15 C -0.037 4.037 16 C 0.024 3.976 17 N -0.318 5.318 18 C 0.030 3.970 19 C -0.387 4.387 20 H 0.084 0.916 21 C -0.196 4.196 22 N -0.546 5.546 23 Si 0.732 3.268 24 H -0.204 1.204 25 H -0.217 1.217 26 H -0.218 1.218 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.145 0.855 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.222 0.778 35 H 0.236 0.764 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.043 0.957 42 H 0.076 0.924 43 H 0.061 0.939 44 H 0.053 0.947 45 H 0.053 0.947 46 H 0.012 0.988 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.733 19.471 11.001 22.376 hybrid contribution 0.367 -0.647 -0.732 1.043 sum 1.100 18.825 10.269 21.471 Atomic orbital electron populations 1.21734 0.93705 1.01987 1.02046 1.20425 0.96521 0.96118 0.94085 1.21729 1.00783 0.94740 1.02068 1.20699 0.92094 0.92438 0.93309 1.66051 1.25511 1.28044 0.98627 1.28728 0.98137 0.95920 1.03601 1.84079 1.41796 1.34223 0.97803 1.25534 1.11139 1.07238 0.97545 1.16640 0.79079 0.79282 0.86806 1.90710 1.61401 1.61130 1.26956 1.45820 1.40059 1.39656 1.10677 1.21487 0.97090 0.94648 0.86591 1.22613 0.94259 0.88410 0.97544 1.88014 1.34286 1.29405 1.76889 1.23526 0.92787 0.89021 0.98361 1.20896 0.92941 0.91700 0.92027 1.43876 1.09448 1.34076 1.44436 1.20691 0.84513 0.96872 0.94958 1.19225 1.18110 1.02361 0.99028 0.91588 1.25066 1.00137 0.98066 0.96312 1.70102 1.32842 1.33419 1.18203 0.86240 0.77530 0.83657 0.79422 1.20418 1.21671 1.21821 0.92140 0.92052 0.92816 0.85517 0.92387 0.93010 0.91896 0.77833 0.76421 0.89620 0.90092 0.91764 0.93779 0.93236 0.95715 0.92360 0.93875 0.94739 0.94740 0.98825 0.93928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.08 37.16 0.34 -1.14 16 2 C -0.05 -0.61 3.15 -91.77 -0.29 -0.90 16 3 C -0.14 -1.37 9.18 37.16 0.34 -1.03 16 4 C 0.15 1.90 5.40 -83.89 -0.45 1.45 16 5 N -0.47 -5.27 10.27 -11.53 -0.12 -5.39 16 6 C 0.03 0.27 12.22 51.75 0.63 0.90 16 7 S 0.17 1.50 22.37 -107.50 -2.40 -0.91 16 8 C -0.29 -3.64 6.48 -37.09 -0.24 -3.88 16 9 C 0.60 8.61 7.77 -12.85 -0.10 8.51 16 10 O -0.52 -8.80 14.02 5.20 0.07 -8.73 16 11 N -0.71 -9.44 5.50 -61.62 -0.34 -9.78 16 12 C 0.12 1.73 6.06 -4.04 -0.02 1.71 16 13 C 0.05 0.70 6.07 37.16 0.23 0.92 16 14 O -0.37 -6.71 9.85 -35.23 -0.35 -7.06 16 15 C 0.04 0.77 6.28 37.16 0.23 1.00 16 16 C 0.15 3.07 6.11 -4.04 -0.02 3.05 16 17 N -0.60 -15.10 2.89 -181.12 -0.52 -15.63 16 18 C 0.17 4.48 8.61 59.85 0.52 4.99 16 19 C -0.26 -7.07 9.66 -15.06 -0.15 -7.22 16 20 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 21 C 0.00 0.08 5.14 -17.43 -0.09 -0.01 16 22 N -0.90 -26.64 10.64 55.49 0.59 -26.05 16 23 Si 0.90 21.94 29.57 -169.99 -5.03 16.91 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H 0.06 0.63 8.06 -51.92 -0.42 0.21 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.13 1.77 4.96 -51.93 -0.26 1.51 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.21 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.40 4.74 7.67 -40.82 -0.31 4.43 16 36 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 1.10 8.03 -51.93 -0.42 0.68 16 43 H 0.04 0.81 7.86 -51.93 -0.41 0.40 16 44 H 0.03 0.97 7.33 -51.93 -0.38 0.59 16 45 H 0.03 0.94 7.33 -51.93 -0.38 0.56 16 46 H -0.01 -0.16 7.84 -51.93 -0.41 -0.57 16 47 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 400.48 15.07 6.04 6.04 Total: -1.00 -33.21 400.48 -8.74 -41.95 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -7.60 Total: 0.28 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: 0.92 Total: 8.36 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: -0.39 Total: -56.84 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.27 Total: -15.79 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.40 Total: -0.91 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.21 -8.74 -41.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700704487.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.277 kcal (2) G-P(sol) polarization free energy of solvation -33.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds