Wall clock time and date at job start Sat Apr 11 2020 06:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47510 * 2 1 4 4 N 1.30167 * 126.80591 * 270.03194 * 3 2 1 5 5 O 1.20925 * 111.60818 * 179.97438 * 4 3 2 6 6 C 1.34036 * 111.56220 * 359.76188 * 5 4 3 7 7 C 1.35445 * 106.45034 * 0.37732 * 6 5 4 8 8 C 1.50696 * 128.01117 * 179.91045 * 7 6 5 9 9 N 1.46897 * 109.47624 * 259.68295 * 8 7 6 10 10 C 1.46899 * 111.00355 * 179.97438 * 9 8 7 11 11 H 1.09002 * 109.47043 * 324.99919 * 10 9 8 12 12 C 1.53002 * 109.47394 * 84.99974 * 10 9 8 13 13 C 1.52997 * 109.47254 * 204.99848 * 10 9 8 14 14 N 1.46500 * 109.47170 * 54.99822 * 13 10 9 15 15 C 1.46506 * 120.00084 * 270.00261 * 14 13 10 16 16 C 1.34776 * 120.00331 * 90.00159 * 14 13 10 17 17 O 1.21291 * 119.99569 * 359.97438 * 16 14 13 18 18 C 1.50698 * 120.00442 * 180.02562 * 16 14 13 19 19 S 1.81000 * 109.47226 * 179.97438 * 18 16 14 20 20 C 1.76201 * 100.00221 * 179.97438 * 19 18 16 21 21 H 1.08003 * 119.99634 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00246 * 179.97438 * 20 19 18 23 23 N 1.31624 * 119.99797 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99824 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47115 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47087 * 120.00073 * 24 22 20 27 27 H 1.48502 * 109.46667 * 239.99773 * 24 22 20 28 28 H 1.09001 * 109.47048 * 59.99429 * 1 2 3 29 29 H 1.08996 * 109.47113 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47018 * 300.00188 * 1 2 3 31 31 H 1.09007 * 109.47028 * 240.00539 * 2 1 3 32 32 H 1.08998 * 109.47509 * 120.00353 * 2 1 3 33 33 H 1.07999 * 126.77618 * 180.28602 * 6 5 4 34 34 H 1.09006 * 109.47702 * 139.67845 * 8 7 6 35 35 H 1.09006 * 109.47126 * 19.68495 * 8 7 6 36 36 H 1.00901 * 110.99813 * 303.95300 * 9 8 7 37 37 H 1.08996 * 109.47407 * 180.02562 * 12 10 9 38 38 H 1.09000 * 109.46986 * 300.00133 * 12 10 9 39 39 H 1.09002 * 109.47075 * 59.99404 * 12 10 9 40 40 H 1.08998 * 109.47192 * 174.99742 * 13 10 9 41 41 H 1.09000 * 109.47325 * 294.99858 * 13 10 9 42 42 H 1.08998 * 109.47133 * 89.99759 * 15 14 13 43 43 H 1.08995 * 109.46905 * 209.99760 * 15 14 13 44 44 H 1.08998 * 109.47001 * 329.99946 * 15 14 13 45 45 H 1.08997 * 109.47199 * 299.99906 * 18 16 14 46 46 H 1.08998 * 109.47329 * 59.99697 * 18 16 14 47 47 H 0.97002 * 120.00489 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2919 2.1562 -1.0422 5 8 2.6806 3.2565 -0.7252 6 6 2.7256 3.3982 0.6069 7 6 2.3147 2.2193 1.1321 8 6 2.1828 1.8470 2.5864 9 7 3.3484 1.0523 2.9961 10 6 3.2543 0.6709 4.4116 11 1 2.7783 1.4745 4.9736 12 6 2.4208 -0.6055 4.5417 13 6 4.6580 0.4221 4.9672 14 7 5.4918 1.6041 4.7348 15 6 6.2681 1.7212 3.4979 16 6 5.5446 2.5838 5.6588 17 8 4.9015 2.4871 6.6826 18 6 6.4018 3.7999 5.4195 19 16 6.2612 4.9244 6.8308 20 6 7.3326 6.2183 6.2992 21 1 7.8347 6.1460 5.3457 22 6 7.5305 7.3308 7.1052 23 7 6.9181 7.4190 8.2670 24 14 8.6658 8.7027 6.5411 25 1 9.2269 8.3644 5.2085 26 1 7.9002 9.9718 6.4477 27 1 9.7722 8.8629 7.5186 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.0308 4.2782 1.1536 34 1 1.2749 1.2613 2.7307 35 1 2.1304 2.7530 3.1901 36 1 3.4561 0.2390 2.4086 37 1 2.3506 -0.8882 5.5920 38 1 1.4207 -0.4283 4.1460 39 1 2.8967 -1.4091 3.9797 40 1 4.5957 0.2262 6.0376 41 1 5.1001 -0.4387 4.4654 42 1 5.6674 2.2206 2.7377 43 1 7.1698 2.3031 3.6886 44 1 6.5447 0.7270 3.1470 45 1 7.4412 3.4941 5.3003 46 1 6.0668 4.3084 4.5155 47 1 7.0561 8.1966 8.8302 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700742719.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:54 Heat of formation + Delta-G solvation = 20.324578 kcal Electronic energy + Delta-G solvation = -27630.821856 eV Core-core repulsion = 23750.234802 eV Total energy + Delta-G solvation = -3880.587053 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.13435 -39.52739 -37.69053 -35.92185 -34.70233 -33.09750 -32.40870 -31.37810 -30.68905 -29.27608 -27.08022 -26.16874 -25.54845 -25.01877 -24.63077 -21.72727 -21.31434 -21.09937 -19.08933 -17.79118 -17.62773 -17.57133 -16.54451 -16.20060 -15.71504 -15.44788 -15.20444 -15.11493 -14.78718 -14.50920 -14.16769 -13.90593 -13.65764 -13.28047 -13.10608 -12.95623 -12.82757 -12.75100 -12.57654 -12.44359 -12.33234 -11.98377 -11.96850 -11.87918 -11.79312 -11.53210 -11.09792 -11.08225 -11.05804 -10.99044 -10.72831 -10.17834 -9.76495 -9.70961 -9.26957 -9.05458 -8.82193 -8.20239 -8.16232 -6.46960 -6.19845 -3.89618 1.30006 1.92732 3.04429 3.06161 3.17002 3.22634 3.29178 3.33638 3.69287 3.80376 4.06791 4.20460 4.22742 4.57910 4.65934 4.72151 4.82501 4.85452 4.89981 4.99749 5.06200 5.09941 5.15391 5.26932 5.31624 5.36405 5.37946 5.40415 5.48597 5.58885 5.61469 5.62088 5.69189 5.70985 5.74799 5.82977 5.85822 5.88453 5.99256 6.03777 6.21314 6.70247 6.79381 7.13630 7.61878 7.70697 8.05131 8.37617 8.68385 9.25772 10.87625 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012803 B = 0.002672 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.383679 B =10476.733870 C =11957.583052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.044 4.044 3 C 0.023 3.977 4 N -0.367 5.367 5 O 0.096 5.904 6 C -0.036 4.036 7 C -0.196 4.196 8 C 0.137 3.863 9 N -0.670 5.670 10 C 0.065 3.935 11 H 0.087 0.913 12 C -0.180 4.180 13 C 0.132 3.868 14 N -0.606 5.606 15 C 0.094 3.906 16 C 0.533 3.467 17 O -0.525 6.525 18 C -0.147 4.147 19 S -0.065 6.065 20 C -0.532 4.532 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.917 3.083 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.218 0.782 34 H 0.043 0.957 35 H 0.087 0.913 36 H 0.337 0.663 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.059 0.941 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.335 -17.359 -16.171 25.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.082 4.082 3 C -0.136 4.136 4 N -0.072 5.072 5 O 0.032 5.968 6 C -0.118 4.118 7 C -0.200 4.200 8 C 0.008 3.992 9 N -0.301 5.301 10 C -0.046 4.046 11 H 0.105 0.895 12 C -0.239 4.239 13 C 0.008 3.992 14 N -0.341 5.341 15 C -0.050 4.050 16 C 0.321 3.679 17 O -0.400 6.400 18 C -0.298 4.298 19 S 0.162 5.838 20 C -0.680 4.680 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.504 5.504 24 Si 0.744 3.256 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.235 0.765 34 H 0.061 0.939 35 H 0.105 0.895 36 H 0.155 0.845 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.104 0.896 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.105 0.895 46 H 0.106 0.894 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.967 -17.029 -15.703 25.629 hybrid contribution 0.814 0.360 -0.820 1.210 sum -10.153 -16.669 -16.523 25.572 Atomic orbital electron populations 1.21722 0.93962 1.02288 1.02487 1.19898 0.96385 0.88398 1.03508 1.23470 1.02388 0.99143 0.88636 1.73832 1.16225 0.92910 1.24280 1.84831 1.62197 1.26564 1.23247 1.25919 1.01323 1.01377 0.83218 1.21130 1.07663 0.94172 0.97063 1.20107 0.91991 0.98740 0.88337 1.60572 1.40489 1.25894 1.03170 1.22085 0.96600 0.96931 0.88966 0.89469 1.22433 1.00135 0.98254 1.03098 1.21370 0.89181 0.87338 1.01312 1.47550 1.46789 1.20085 1.19640 1.21661 0.95187 1.01699 0.86436 1.20280 0.81721 0.83381 0.82565 1.90679 1.44259 1.78272 1.26773 1.23523 1.01322 0.98010 1.06905 1.85365 1.62001 1.16290 1.20174 1.22899 1.31676 1.05831 1.07630 0.90957 1.24987 0.96172 0.97885 0.94585 1.70028 1.40949 1.29406 1.09972 0.86135 0.79928 0.80831 0.78719 1.19603 1.20602 1.20600 0.92367 0.91645 0.92342 0.90090 0.90060 0.76531 0.93896 0.89457 0.84511 0.91448 0.92607 0.92411 0.89617 0.91214 0.91875 0.91769 0.92254 0.89519 0.89417 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.89 37.16 0.37 -0.54 16 2 C -0.04 -0.30 6.44 -27.88 -0.18 -0.48 16 3 C 0.02 0.22 6.58 -82.10 -0.54 -0.32 16 4 N -0.37 -4.22 12.07 33.42 0.40 -3.81 16 5 O 0.10 1.03 11.20 17.19 0.19 1.22 16 6 C -0.04 -0.32 12.26 29.74 0.36 0.04 16 7 C -0.20 -1.76 5.84 -104.43 -0.61 -2.37 16 8 C 0.14 1.16 5.97 -4.98 -0.03 1.13 16 9 N -0.67 -5.63 4.93 -107.99 -0.53 -6.16 16 10 C 0.07 0.61 2.89 -67.71 -0.20 0.42 16 11 H 0.09 1.07 7.80 -51.93 -0.40 0.67 16 12 C -0.18 -1.26 9.16 37.16 0.34 -0.92 16 13 C 0.13 1.45 5.19 -4.04 -0.02 1.43 16 14 N -0.61 -8.22 2.73 -181.57 -0.50 -8.71 16 15 C 0.09 1.02 9.61 59.85 0.58 1.59 16 16 C 0.53 9.91 7.69 -10.99 -0.08 9.83 16 17 O -0.52 -11.67 15.44 5.55 0.09 -11.58 16 18 C -0.15 -2.98 4.71 36.00 0.17 -2.81 16 19 S -0.07 -1.76 20.57 -107.50 -2.21 -3.97 16 20 C -0.53 -15.10 9.50 30.94 0.29 -14.80 16 21 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 22 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -26.13 13.22 55.49 0.73 -25.39 16 24 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.44 7.79 -51.93 -0.40 0.04 16 33 H 0.22 1.42 8.06 -52.49 -0.42 0.99 16 34 H 0.04 0.33 7.44 -51.93 -0.39 -0.06 16 35 H 0.09 0.84 8.06 -51.93 -0.42 0.42 16 36 H 0.34 2.44 8.11 -39.29 -0.32 2.12 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.05 0.37 7.45 -51.93 -0.39 -0.02 16 39 H 0.06 0.33 8.13 -51.93 -0.42 -0.09 16 40 H 0.09 1.09 7.42 -51.93 -0.39 0.70 16 41 H 0.07 0.60 7.89 -51.93 -0.41 0.19 16 42 H 0.06 0.68 7.72 -51.93 -0.40 0.28 16 43 H 0.06 0.73 6.44 -51.93 -0.33 0.39 16 44 H 0.06 0.52 7.89 -51.93 -0.41 0.11 16 45 H 0.09 1.66 7.40 -51.92 -0.38 1.27 16 46 H 0.09 1.67 8.11 -51.92 -0.42 1.25 16 47 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 404.81 15.07 6.10 6.10 Total: -1.00 -34.64 404.81 -7.96 -42.60 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -7.57 Total: -0.81 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 0.36 Total: -5.83 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: 0.11 Total: -44.07 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.28 Total: -10.36 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.76 SS G_CDS: -2.21 Total: -3.97 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.64 -7.96 -42.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700742719.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.925 kcal (2) G-P(sol) polarization free energy of solvation -34.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds