Wall clock time and date at job start Sat Apr 11 2020 06:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47265 * 2 1 4 4 C 1.53003 * 109.47038 * 240.00228 * 2 1 3 5 5 C 1.50702 * 109.47161 * 120.00545 * 2 1 3 6 6 N 1.29025 * 124.92045 * 60.27294 * 5 2 1 7 7 C 1.31776 * 117.12705 * 180.23045 * 6 5 2 8 8 C 1.50705 * 122.75337 * 179.75480 * 7 6 5 9 9 C 1.50699 * 109.46836 * 264.73491 * 8 7 6 10 10 O 1.21278 * 120.00176 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99538 * 179.97438 * 9 8 7 12 12 C 1.46501 * 119.99874 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47349 * 180.02562 * 12 11 9 14 14 H 1.09000 * 109.46953 * 295.00895 * 13 12 11 15 15 C 1.52996 * 109.47332 * 175.00381 * 13 12 11 16 16 O 1.42906 * 109.46885 * 305.00176 * 15 13 12 17 17 N 1.46505 * 109.46807 * 55.00436 * 13 12 11 18 18 C 1.36931 * 119.99788 * 205.00000 * 17 13 12 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 13 20 20 C 1.38817 * 119.99680 * 179.72358 * 18 17 13 21 21 N 1.31617 * 119.99873 * 180.27450 * 20 18 17 22 22 Si 1.86800 * 120.00209 * 0.27770 * 20 18 17 23 23 H 1.48498 * 109.47118 * 89.99559 * 22 20 18 24 24 H 1.48499 * 109.47134 * 210.00079 * 22 20 18 25 25 H 1.48507 * 109.46904 * 329.99901 * 22 20 18 26 26 C 1.33643 * 114.49826 * 359.48567 * 7 6 5 27 27 S 1.70977 * 124.91281 * 239.97707 * 5 2 1 28 28 H 1.08999 * 109.46441 * 299.99813 * 1 2 3 29 29 H 1.09000 * 109.46930 * 60.00062 * 1 2 3 30 30 H 1.08997 * 109.47278 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.46716 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47102 * 300.00275 * 3 2 1 33 33 H 1.09004 * 109.46584 * 60.00420 * 3 2 1 34 34 H 1.09007 * 109.46621 * 300.00370 * 4 2 1 35 35 H 1.08994 * 109.47136 * 59.99844 * 4 2 1 36 36 H 1.08991 * 109.47170 * 180.02562 * 4 2 1 37 37 H 1.09000 * 109.46845 * 144.73096 * 8 7 6 38 38 H 1.08998 * 109.46775 * 24.73237 * 8 7 6 39 39 H 0.97000 * 120.00108 * 0.02562 * 11 9 8 40 40 H 1.09009 * 109.46721 * 60.00549 * 12 11 9 41 41 H 1.09000 * 109.47501 * 300.00847 * 12 11 9 42 42 H 1.08998 * 109.47306 * 65.00267 * 15 13 12 43 43 H 1.08990 * 109.47060 * 185.00303 * 15 13 12 44 44 H 0.96701 * 113.99874 * 179.97438 * 16 15 13 45 45 H 0.97000 * 119.99792 * 24.99795 * 17 13 12 46 46 H 0.97000 * 120.00553 * 180.02562 * 21 20 18 47 47 H 1.07998 * 126.03822 * 180.27138 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7105 1.2304 6 7 1.7840 -1.9418 1.5254 7 6 2.2989 -2.4069 2.6457 8 6 2.0851 -3.8229 3.1152 9 6 0.9275 -3.8631 4.0791 10 8 0.3347 -2.8424 4.3579 11 7 0.5509 -5.0334 4.6315 12 6 -0.5741 -5.0725 5.5690 13 6 -0.7913 -6.5101 6.0455 14 1 -1.0965 -7.1301 5.2026 15 6 -1.8830 -6.5329 7.1172 16 8 -1.5365 -5.6300 8.1693 17 7 0.4567 -7.0316 6.6086 18 6 0.6875 -8.3812 6.6285 19 1 -0.0502 -9.0612 6.2287 20 6 1.8725 -8.8749 7.1568 21 7 2.0967 -10.1718 7.1710 22 14 3.1487 -7.6988 7.8477 23 1 2.8868 -7.4771 9.2925 24 1 4.5038 -8.2809 7.6738 25 1 3.0701 -6.4033 7.1259 26 6 3.0308 -1.5215 3.3287 27 16 3.0200 -0.0037 2.4339 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6768 1.9563 0.8901 34 1 1.6766 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1299 -0.7216 -1.2491 37 1 2.9860 -4.1801 3.6140 38 1 1.8670 -4.4606 2.2586 39 1 1.0253 -5.8497 4.4088 40 1 -1.4751 -4.7147 5.0705 41 1 -0.3555 -4.4352 6.4258 42 1 -2.8321 -6.2291 6.6755 43 1 -1.9759 -7.5414 7.5198 44 1 -2.1857 -5.5924 8.8850 45 1 1.1194 -6.4208 6.9673 46 1 2.9245 -10.5169 7.5405 47 1 3.5392 -1.7041 4.2639 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700803886.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:57 Heat of formation + Delta-G solvation = -42.279100 kcal Electronic energy + Delta-G solvation = -27390.369894 eV Core-core repulsion = 23507.068142 eV Total energy + Delta-G solvation = -3883.301752 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.39818 -39.14861 -37.34276 -36.90051 -35.00783 -33.54537 -31.96456 -31.33970 -29.10550 -28.05276 -27.76064 -27.53729 -25.50649 -24.66323 -23.29157 -20.89792 -20.20453 -19.71162 -19.41419 -17.99661 -17.57746 -16.92511 -16.76373 -16.01009 -15.73576 -15.13347 -15.01963 -14.63159 -14.39515 -14.27859 -14.04708 -13.75007 -13.55091 -13.37009 -13.23273 -13.01839 -12.82115 -12.65307 -12.46664 -12.44479 -12.08838 -11.98875 -11.72487 -11.59652 -11.36888 -11.32876 -11.21092 -11.00966 -10.88649 -10.71921 -10.14985 -9.72450 -9.67442 -9.66377 -9.47876 -9.40678 -9.02972 -8.77092 -8.69173 -7.37643 -5.85500 -3.21897 0.66836 1.29132 1.66867 2.66165 2.89026 3.32900 3.39212 3.42470 3.56661 3.81490 4.42126 4.52866 4.57394 4.62548 4.79767 4.88461 5.05226 5.15369 5.19964 5.21009 5.22436 5.30094 5.36993 5.41151 5.43557 5.43616 5.52755 5.59972 5.62075 5.69699 5.75214 5.81314 5.90820 5.92404 5.95344 6.01774 6.13106 6.23170 6.37135 6.60697 6.80775 7.70369 7.84356 7.88116 8.09271 8.33404 8.50420 9.11328 9.83870 10.04192 11.32190 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015936 B = 0.002511 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.561183 B =11150.014271 C =11837.911951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.012 3.988 3 C -0.153 4.153 4 C -0.133 4.133 5 C 0.060 3.940 6 N -0.459 5.459 7 C 0.095 3.905 8 C -0.071 4.071 9 C 0.515 3.485 10 O -0.544 6.544 11 N -0.717 5.717 12 C 0.117 3.883 13 C 0.172 3.828 14 H 0.075 0.925 15 C 0.059 3.941 16 O -0.565 6.565 17 N -0.738 5.738 18 C -0.250 4.250 19 H 0.091 0.909 20 C 0.009 3.991 21 N -0.931 5.931 22 Si 0.885 3.115 23 H -0.284 1.284 24 H -0.292 1.292 25 H -0.277 1.277 26 C -0.248 4.248 27 S 0.114 5.886 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.409 0.591 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.031 0.969 43 H 0.054 0.946 44 H 0.366 0.634 45 H 0.366 0.634 46 H 0.260 0.740 47 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.927 21.205 -14.124 25.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.008 3.992 3 C -0.211 4.211 4 C -0.192 4.192 5 C -0.219 4.219 6 N -0.172 5.172 7 C -0.037 4.037 8 C -0.114 4.114 9 C 0.300 3.700 10 O -0.422 6.422 11 N -0.369 5.369 12 C -0.007 4.007 13 C 0.061 3.939 14 H 0.092 0.908 15 C -0.022 4.022 16 O -0.369 6.369 17 N -0.381 5.381 18 C -0.380 4.380 19 H 0.108 0.892 20 C -0.187 4.187 21 N -0.578 5.578 22 Si 0.715 3.285 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.203 1.203 26 C -0.387 4.387 27 S 0.370 5.630 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.245 0.755 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.049 0.951 43 H 0.072 0.928 44 H 0.211 0.789 45 H 0.199 0.801 46 H 0.070 0.930 47 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -0.687 22.429 -14.519 26.726 hybrid contribution 0.534 -0.856 1.433 1.752 sum -0.153 21.572 -13.086 25.232 Atomic orbital electron populations 1.21837 0.92213 1.03258 1.01976 1.19216 0.96658 0.93839 0.89515 1.22020 1.01604 0.94372 1.03134 1.21834 1.01055 1.01158 0.95165 1.26965 1.00884 0.93162 1.00855 1.65873 1.22062 1.12065 1.17215 1.19425 0.96544 0.96978 0.90759 1.20213 0.98990 0.92324 0.99882 1.20268 0.84794 0.83651 0.81262 1.90684 1.55755 1.33534 1.62225 1.45988 1.34875 1.10200 1.45852 1.21574 0.88486 0.98383 0.92275 1.20569 0.87736 0.91908 0.93676 0.90764 1.22994 0.96762 0.92923 0.89523 1.86519 1.50904 1.65320 1.34142 1.42723 1.17135 1.04992 1.73300 1.19048 1.02692 0.81638 1.34590 0.89157 1.24649 0.97876 0.95435 1.00729 1.69697 1.26363 1.10764 1.50949 0.86553 0.81742 0.80576 0.79587 1.21085 1.21837 1.20318 1.26778 1.09571 0.95911 1.06402 1.83770 1.47870 1.15048 1.16268 0.92440 0.91735 0.91368 0.91862 0.90741 0.91819 0.91369 0.91703 0.92552 0.87120 0.87001 0.75452 0.91818 0.90754 0.95114 0.92752 0.78873 0.80088 0.92969 0.80821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.19 8.45 37.16 0.31 -0.88 16 2 C 0.01 0.10 0.99 -155.65 -0.15 -0.05 16 3 C -0.15 -1.02 7.54 37.16 0.28 -0.74 16 4 C -0.13 -1.05 8.45 37.16 0.31 -0.74 16 5 C 0.06 0.71 5.78 -13.46 -0.08 0.63 16 6 N -0.46 -6.44 10.51 -8.05 -0.08 -6.53 16 7 C 0.09 1.33 5.23 -84.22 -0.44 0.89 16 8 C -0.07 -0.94 6.11 -29.03 -0.18 -1.12 16 9 C 0.52 8.45 7.82 -10.99 -0.09 8.37 16 10 O -0.54 -10.76 16.03 5.56 0.09 -10.67 16 11 N -0.72 -11.62 5.39 -60.29 -0.32 -11.94 16 12 C 0.12 1.99 5.12 -4.04 -0.02 1.97 16 13 C 0.17 3.11 2.84 -67.93 -0.19 2.92 16 14 H 0.07 1.31 8.08 -51.93 -0.42 0.89 16 15 C 0.06 0.98 6.86 37.16 0.25 1.24 16 16 O -0.57 -9.47 12.64 -35.23 -0.45 -9.92 16 17 N -0.74 -16.39 4.31 -53.42 -0.23 -16.62 16 18 C -0.25 -6.60 10.41 -15.06 -0.16 -6.75 16 19 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 20 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 21 N -0.93 -28.18 13.97 55.49 0.78 -27.40 16 22 Si 0.89 21.70 27.74 -169.99 -4.72 16.99 16 23 H -0.28 -7.14 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.28 -6.39 6.51 56.52 0.37 -6.02 16 26 C -0.25 -3.17 11.14 29.12 0.32 -2.84 16 27 S 0.11 1.23 21.57 -107.50 -2.32 -1.09 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.40 7.92 -51.93 -0.41 -0.01 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.43 7.92 -51.93 -0.41 0.02 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.11 1.32 8.14 -51.93 -0.42 0.89 16 39 H 0.41 6.44 8.14 -40.82 -0.33 6.11 16 40 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 41 H 0.07 1.41 7.39 -51.93 -0.38 1.03 16 42 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.37 4.37 9.12 45.56 0.42 4.78 16 45 H 0.37 8.42 5.66 -40.82 -0.23 8.19 16 46 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 47 H 0.17 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 401.49 15.07 6.05 6.05 Total: -1.00 -34.39 401.49 -7.98 -42.37 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: -6.86 Total: 15.71 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 0.08 Total: 3.06 kcal Atomic # 7 Polarization: -62.63 SS G_CDS: 0.14 Total: -62.50 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.36 Total: -20.59 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.72 Total: 16.99 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -2.32 Total: -1.09 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.39 -7.98 -42.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700803886.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.092 kcal (2) G-P(sol) polarization free energy of solvation -34.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds