Wall clock time and date at job start Sat Apr 11 2020 06:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47138 * 2 1 4 4 C 1.53009 * 109.46999 * 240.00196 * 2 1 3 5 5 C 1.50694 * 109.47302 * 120.00058 * 2 1 3 6 6 N 1.29029 * 124.91519 * 60.27945 * 5 2 1 7 7 C 1.31778 * 117.12412 * 180.22928 * 6 5 2 8 8 C 1.50701 * 122.75128 * 179.75190 * 7 6 5 9 9 C 1.50703 * 109.47355 * 264.73421 * 8 7 6 10 10 O 1.21283 * 119.99488 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00290 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99828 * 180.27728 * 11 9 8 13 13 C 1.52996 * 109.47059 * 179.72339 * 12 11 9 14 14 H 1.09002 * 109.47682 * 64.99618 * 13 12 11 15 15 C 1.53003 * 109.47530 * 184.99929 * 13 12 11 16 16 O 1.42902 * 109.46730 * 54.99530 * 15 13 12 17 17 N 1.46506 * 109.47012 * 304.99483 * 13 12 11 18 18 C 1.36937 * 119.99934 * 154.99714 * 17 13 12 19 19 H 1.07998 * 120.00035 * 0.02562 * 18 17 13 20 20 C 1.38810 * 120.00229 * 180.02562 * 18 17 13 21 21 N 1.31626 * 119.99636 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00308 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47471 * 59.99546 * 22 20 18 24 24 H 1.48500 * 109.47319 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47004 * 299.99904 * 22 20 18 26 26 C 1.33642 * 114.50171 * 359.48109 * 7 6 5 27 27 S 1.70976 * 124.92107 * 239.97625 * 5 2 1 28 28 H 1.09000 * 109.46875 * 299.99855 * 1 2 3 29 29 H 1.09003 * 109.46831 * 60.00142 * 1 2 3 30 30 H 1.09000 * 109.46990 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47053 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.46859 * 300.00034 * 3 2 1 33 33 H 1.08995 * 109.47013 * 59.99823 * 3 2 1 34 34 H 1.09000 * 109.46615 * 300.00194 * 4 2 1 35 35 H 1.08994 * 109.46829 * 60.00077 * 4 2 1 36 36 H 1.09000 * 109.47080 * 180.02562 * 4 2 1 37 37 H 1.08998 * 109.47477 * 144.73267 * 8 7 6 38 38 H 1.09002 * 109.47412 * 24.73525 * 8 7 6 39 39 H 0.97001 * 119.99727 * 359.97438 * 11 9 8 40 40 H 1.09004 * 109.46963 * 299.72135 * 12 11 9 41 41 H 1.08994 * 109.47567 * 59.72287 * 12 11 9 42 42 H 1.08992 * 109.47566 * 174.99860 * 15 13 12 43 43 H 1.08998 * 109.46886 * 295.00118 * 15 13 12 44 44 H 0.96705 * 113.99732 * 180.02562 * 16 15 13 45 45 H 0.97000 * 120.00390 * 335.00529 * 17 13 12 46 46 H 0.97001 * 119.99765 * 180.02562 * 21 20 18 47 47 H 1.08002 * 126.03806 * 180.27071 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0324 -0.7104 1.2304 6 7 1.7840 -1.9417 1.5254 7 6 2.2989 -2.4067 2.6457 8 6 2.0852 -3.8227 3.1152 9 6 0.9275 -3.8631 4.0791 10 8 0.3347 -2.8424 4.3579 11 7 0.5516 -5.0332 4.6323 12 6 -0.5777 -5.0733 5.5647 13 6 -0.7978 -6.5117 6.0375 14 1 0.0657 -6.8402 6.6160 15 6 -2.0516 -6.5749 6.9121 16 8 -3.1620 -6.0354 6.1924 17 7 -0.9686 -7.3870 4.8752 18 6 -0.6734 -8.7206 4.9732 19 1 -0.3151 -9.1272 5.9073 20 6 -0.8348 -9.5500 3.8718 21 7 -1.2720 -9.0546 2.7334 22 14 -0.4329 -11.3693 4.0056 23 1 -1.2872 -11.9895 5.0500 24 1 -0.6876 -12.0298 2.7003 25 1 0.9965 -11.5347 4.3729 26 6 3.0309 -1.5214 3.3287 27 16 3.0200 -0.0037 2.4339 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6766 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7217 -1.2491 37 1 2.9860 -4.1800 3.6141 38 1 1.8671 -4.4605 2.2586 39 1 1.0260 -5.8495 4.4096 40 1 -0.3625 -4.4375 6.4235 41 1 -1.4762 -4.7144 5.0629 42 1 -2.2588 -7.6119 7.1758 43 1 -1.8906 -5.9942 7.8204 44 1 -3.9927 -6.0432 6.6874 45 1 -1.2907 -7.0220 4.0362 46 1 -1.3851 -9.6342 1.9639 47 1 3.5393 -1.7041 4.2639 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700803887.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:59 Heat of formation + Delta-G solvation = -45.230175 kcal Electronic energy + Delta-G solvation = -27357.856588 eV Core-core repulsion = 23474.426867 eV Total energy + Delta-G solvation = -3883.429721 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.29974 -39.01106 -37.18746 -36.78748 -34.84554 -33.42818 -31.86575 -31.13923 -28.65692 -27.80600 -27.66647 -27.42434 -25.39704 -24.56771 -23.58657 -20.79206 -20.09233 -19.57070 -19.32593 -17.69401 -17.43405 -16.73844 -16.54572 -15.96095 -15.60595 -15.03506 -14.89248 -14.56403 -14.30613 -14.07274 -13.95065 -13.73158 -13.45506 -13.35332 -13.08737 -12.92781 -12.77917 -12.55698 -12.33665 -12.23350 -11.88263 -11.81659 -11.61420 -11.36181 -11.29853 -11.22819 -11.11371 -10.87324 -10.83828 -10.56051 -10.12902 -9.78822 -9.58569 -9.55507 -9.35550 -9.32949 -8.97850 -8.68813 -8.53186 -7.03654 -5.80899 -3.11611 0.74323 1.36571 1.73770 2.76213 3.02988 3.39054 3.44077 3.45712 3.69221 3.92995 4.51859 4.52723 4.66896 4.73094 4.93664 4.97476 5.14379 5.24559 5.29423 5.30838 5.39486 5.43476 5.49562 5.53715 5.53828 5.58520 5.62113 5.70206 5.72461 5.82038 5.84855 5.90938 6.03599 6.06355 6.06932 6.13736 6.23609 6.39314 6.52095 6.76528 6.96120 7.61697 7.80921 7.99958 8.21472 8.35898 8.65069 9.47969 10.03475 10.40078 11.40455 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013733 B = 0.002469 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.327062 B =11339.260092 C =12074.867826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.011 3.989 3 C -0.153 4.153 4 C -0.134 4.134 5 C 0.063 3.937 6 N -0.457 5.457 7 C 0.098 3.902 8 C -0.071 4.071 9 C 0.516 3.484 10 O -0.547 6.547 11 N -0.712 5.712 12 C 0.120 3.880 13 C 0.166 3.834 14 H 0.065 0.935 15 C 0.059 3.941 16 O -0.560 6.560 17 N -0.713 5.713 18 C -0.249 4.249 19 H 0.069 0.931 20 C -0.007 4.007 21 N -0.925 5.925 22 Si 0.906 3.094 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.251 4.251 27 S 0.108 5.892 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.410 0.590 40 H 0.059 0.941 41 H 0.074 0.926 42 H 0.048 0.952 43 H 0.026 0.974 44 H 0.363 0.637 45 H 0.389 0.611 46 H 0.257 0.743 47 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.133 19.138 -1.368 21.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.007 3.993 3 C -0.211 4.211 4 C -0.193 4.193 5 C -0.216 4.216 6 N -0.170 5.170 7 C -0.033 4.033 8 C -0.114 4.114 9 C 0.301 3.699 10 O -0.425 6.425 11 N -0.364 5.364 12 C -0.004 4.004 13 C 0.055 3.945 14 H 0.083 0.917 15 C -0.022 4.022 16 O -0.363 6.363 17 N -0.355 5.355 18 C -0.380 4.380 19 H 0.087 0.913 20 C -0.204 4.204 21 N -0.572 5.572 22 Si 0.737 3.263 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.390 4.390 27 S 0.364 5.636 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.126 0.874 38 H 0.132 0.868 39 H 0.246 0.754 40 H 0.077 0.923 41 H 0.093 0.907 42 H 0.067 0.933 43 H 0.044 0.956 44 H 0.208 0.792 45 H 0.224 0.776 46 H 0.066 0.934 47 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 9.372 20.429 -1.786 22.547 hybrid contribution -0.365 -2.495 0.688 2.614 sum 9.006 17.934 -1.098 20.099 Atomic orbital electron populations 1.21846 0.92131 1.03461 1.01938 1.19224 0.96732 0.93779 0.89542 1.22015 1.01517 0.94423 1.03098 1.21840 1.00961 1.01312 0.95142 1.26984 1.00703 0.93099 1.00779 1.65893 1.21839 1.12014 1.17251 1.19461 0.96210 0.97017 0.90642 1.20211 0.98735 0.92301 1.00165 1.20233 0.84889 0.83711 0.81083 1.90678 1.55956 1.33734 1.62177 1.45944 1.34333 1.10023 1.46123 1.21512 0.89079 0.97491 0.92317 1.20589 0.93999 0.89237 0.90712 0.91705 1.23038 0.88893 0.96728 0.93570 1.86580 1.19239 1.85312 1.45169 1.42372 1.78828 1.05222 1.09038 1.19162 1.37594 0.84758 0.96523 0.91279 1.24752 1.01781 0.97997 0.95903 1.69674 1.51399 1.34776 1.01354 0.86299 0.77988 0.85366 0.76625 1.21364 1.21710 1.21251 1.26719 1.09953 0.95898 1.06394 1.83716 1.48139 1.15201 1.16536 0.92453 0.91736 0.91199 0.91916 0.90772 0.91851 0.91243 0.91706 0.92604 0.87379 0.86774 0.75413 0.92308 0.90727 0.93337 0.95590 0.79192 0.77632 0.93352 0.80923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.45 37.16 0.31 -1.08 16 2 C 0.01 0.11 0.99 -155.66 -0.15 -0.04 16 3 C -0.15 -1.13 7.54 37.16 0.28 -0.85 16 4 C -0.13 -1.22 8.45 37.16 0.31 -0.91 16 5 C 0.06 0.81 5.78 -13.46 -0.08 0.73 16 6 N -0.46 -7.00 10.51 -8.06 -0.08 -7.09 16 7 C 0.10 1.45 5.23 -84.22 -0.44 1.01 16 8 C -0.07 -1.00 6.11 -29.03 -0.18 -1.18 16 9 C 0.52 8.95 7.82 -10.98 -0.09 8.86 16 10 O -0.55 -11.34 16.03 5.55 0.09 -11.25 16 11 N -0.71 -12.27 5.39 -60.30 -0.32 -12.59 16 12 C 0.12 2.19 5.12 -4.04 -0.02 2.17 16 13 C 0.17 3.16 2.84 -67.93 -0.19 2.97 16 14 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16 15 C 0.06 1.04 6.86 37.16 0.25 1.29 16 16 O -0.56 -10.21 12.64 -35.23 -0.45 -10.65 16 17 N -0.71 -17.00 4.51 -53.42 -0.24 -17.24 16 18 C -0.25 -6.53 9.93 -15.06 -0.15 -6.68 16 19 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 20 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 21 N -0.92 -27.28 13.06 55.49 0.72 -26.56 16 22 Si 0.91 21.66 29.55 -169.99 -5.02 16.63 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 26 C -0.25 -3.20 11.14 29.12 0.32 -2.87 16 27 S 0.11 1.19 21.57 -107.50 -2.32 -1.13 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.43 7.92 -51.93 -0.41 0.02 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.47 7.92 -51.93 -0.41 0.06 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 39 H 0.41 6.94 8.14 -40.82 -0.33 6.60 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.07 1.56 7.39 -51.93 -0.38 1.17 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.36 4.79 9.12 45.56 0.42 5.21 16 45 H 0.39 10.38 7.80 -40.82 -0.32 10.06 16 46 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 47 H 0.17 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 404.62 15.07 6.10 6.10 Total: -1.00 -33.95 404.62 -8.34 -42.29 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: -6.90 Total: 18.38 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 0.09 Total: 3.11 kcal Atomic # 7 Polarization: -63.56 SS G_CDS: 0.07 Total: -63.48 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.36 Total: -21.90 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -2.32 Total: -1.13 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.95 -8.34 -42.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700803887.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.942 kcal (2) G-P(sol) polarization free energy of solvation -33.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds