Wall clock time and date at job start Sat Apr 11 2020 06:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29034 * 124.91547 * 2 1 4 4 C 1.31779 * 117.12559 * 179.97438 * 3 2 1 5 5 C 1.50696 * 122.75277 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47089 * 305.03460 * 5 4 3 7 7 C 1.52998 * 109.46975 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47195 * 179.97438 * 7 6 5 9 9 O 1.21282 * 119.99858 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00284 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00004 * 0.02562 * 10 8 7 12 12 C 1.46506 * 120.00290 * 180.02562 * 10 8 7 13 13 C 1.53001 * 109.47114 * 270.00378 * 12 10 8 14 14 H 1.09006 * 109.47121 * 59.99738 * 13 12 10 15 15 O 1.42895 * 109.46955 * 299.99823 * 13 12 10 16 16 C 1.52992 * 109.47148 * 179.97438 * 13 12 10 17 17 N 1.46499 * 109.47267 * 184.99978 * 16 13 12 18 18 C 1.36935 * 119.99938 * 179.97438 * 17 16 13 19 19 H 1.08000 * 120.00518 * 359.72965 * 18 17 16 20 20 C 1.38817 * 119.99990 * 179.97438 * 18 17 16 21 21 N 1.31617 * 119.99869 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99909 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47361 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46860 * 120.00310 * 22 20 18 25 25 H 1.48500 * 109.47264 * 240.00123 * 22 20 18 26 26 C 1.33640 * 114.49725 * 0.23937 * 4 3 2 27 27 S 1.70971 * 124.91980 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47373 * 89.99866 * 1 2 3 29 29 H 1.09003 * 109.47014 * 209.99746 * 1 2 3 30 30 H 1.09007 * 109.47193 * 329.99510 * 1 2 3 31 31 H 1.08998 * 109.47416 * 185.03423 * 5 4 3 32 32 H 1.08997 * 109.46813 * 65.02810 * 5 4 3 33 33 H 1.09000 * 109.47535 * 59.99656 * 6 5 4 34 34 H 1.08997 * 109.46763 * 299.99382 * 6 5 4 35 35 H 1.09000 * 109.47095 * 59.99601 * 7 6 5 36 36 H 1.08997 * 109.47046 * 299.99423 * 7 6 5 37 37 H 1.08994 * 109.47389 * 270.00168 * 11 10 8 38 38 H 1.09007 * 109.46958 * 29.99862 * 11 10 8 39 39 H 1.09000 * 109.47278 * 149.99598 * 11 10 8 40 40 H 1.08996 * 109.46975 * 149.99846 * 12 10 8 41 41 H 1.08999 * 109.46944 * 30.00396 * 12 10 8 42 42 H 0.96699 * 114.00430 * 299.99811 * 15 13 12 43 43 H 1.09004 * 109.47330 * 64.99881 * 16 13 12 44 44 H 1.09005 * 109.47124 * 305.00085 * 16 13 12 45 45 H 0.96999 * 119.99984 * 359.97438 * 17 16 13 46 46 H 0.96996 * 119.99743 * 179.97438 * 21 20 18 47 47 H 1.08005 * 126.03358 * 179.76291 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5511 0.8795 0.0005 5 6 4.5307 2.0246 0.0000 6 6 4.2333 2.9497 -1.1819 7 6 5.2274 4.1127 -1.1820 8 6 4.9349 5.0234 -2.3464 9 8 4.0215 4.7673 -3.1021 10 7 5.6882 6.1226 -2.5481 11 6 6.7918 6.4318 -1.6356 12 6 5.4035 7.0084 -3.6798 13 6 6.2030 6.5490 -4.9007 14 1 5.9194 5.5283 -5.1578 15 8 7.5993 6.5940 -4.6002 16 6 5.9052 7.4736 -6.0827 17 7 6.5763 6.9652 -7.2816 18 6 6.4526 7.6329 -8.4707 19 1 5.8567 8.5320 -8.5257 20 6 7.0889 7.1515 -9.6066 21 7 7.8107 6.0529 -9.5408 22 14 6.9195 8.0621 -11.2288 23 1 6.0608 9.2584 -11.0377 24 1 8.2620 8.4871 -11.7003 25 1 6.3016 7.1648 -12.2380 26 6 3.9353 -0.4005 -0.0041 27 16 2.4857 -1.4019 -0.0006 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 5.5448 1.6353 -0.0896 32 1 4.4368 2.5834 0.9312 33 1 3.2191 3.3390 -1.0924 34 1 4.3271 2.3909 -2.1130 35 1 6.2417 3.7236 -1.2713 36 1 5.1331 4.6713 -0.2508 37 1 6.4253 7.0553 -0.8202 38 1 7.1983 5.5052 -1.2300 39 1 7.5730 6.9647 -2.1777 40 1 5.6870 8.0289 -3.4227 41 1 4.3384 6.9740 -3.9090 42 1 7.9222 7.4739 -4.3622 43 1 6.2694 8.4766 -5.8602 44 1 4.8294 7.5076 -6.2553 45 1 7.1083 6.1555 -7.2331 46 1 8.2550 5.7163 -10.3346 47 1 4.9545 -0.7579 -0.0081 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700937653.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:01 Heat of formation + Delta-G solvation = -40.984336 kcal Electronic energy + Delta-G solvation = -26517.913469 eV Core-core repulsion = 22634.667862 eV Total energy + Delta-G solvation = -3883.245607 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.32478 -39.91220 -37.51488 -35.18940 -34.97716 -33.98505 -32.48556 -31.34304 -29.86608 -28.92111 -27.79515 -26.72765 -25.28844 -23.56659 -22.69004 -21.75425 -21.15608 -20.01019 -19.11511 -17.89562 -17.13338 -16.97757 -16.46137 -16.23918 -15.62406 -15.59697 -15.19374 -15.05077 -14.60400 -14.38877 -14.14419 -13.80144 -13.58050 -13.38366 -13.14084 -12.98895 -12.88101 -12.62223 -12.54590 -12.53826 -12.38446 -12.12193 -12.02457 -11.62123 -11.52129 -11.29687 -10.91549 -10.87534 -10.80587 -10.64437 -10.12774 -9.93453 -9.89866 -9.72771 -9.70763 -9.55827 -8.98294 -8.86529 -8.44769 -6.87999 -5.71336 -3.00589 0.40102 1.04884 1.41982 2.48018 2.68445 3.00367 3.46055 3.50968 3.53767 3.73535 4.42358 4.51367 4.59843 4.68329 4.77367 4.83014 4.91910 4.98077 5.00149 5.07211 5.07927 5.11073 5.22127 5.30491 5.35969 5.39602 5.41454 5.47790 5.50760 5.59821 5.64667 5.73836 5.85493 5.90196 6.02069 6.04990 6.23889 6.28003 6.51389 6.58482 6.79003 7.37935 7.46861 7.72671 8.04572 8.23309 8.46809 9.58116 10.16465 10.52111 11.51242 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014056 B = 0.001810 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.503267 B =15468.281482 C =16527.574210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.052 3.948 3 N -0.467 5.467 4 C 0.077 3.923 5 C -0.044 4.044 6 C -0.097 4.097 7 C -0.137 4.137 8 C 0.510 3.490 9 O -0.536 6.536 10 N -0.609 5.609 11 C 0.081 3.919 12 C 0.086 3.914 13 C 0.086 3.914 14 H 0.101 0.899 15 O -0.551 6.551 16 C 0.127 3.873 17 N -0.725 5.725 18 C -0.241 4.241 19 H 0.070 0.930 20 C -0.015 4.015 21 N -0.930 5.930 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.291 1.291 26 C -0.262 4.262 27 S 0.106 5.894 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.051 0.949 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.365 0.635 43 H 0.020 0.980 44 H 0.027 0.973 45 H 0.388 0.612 46 H 0.254 0.746 47 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.192 -10.844 28.805 31.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.226 4.226 3 N -0.182 5.182 4 C -0.055 4.055 5 C -0.084 4.084 6 C -0.135 4.135 7 C -0.177 4.177 8 C 0.298 3.702 9 O -0.413 6.413 10 N -0.343 5.343 11 C -0.062 4.062 12 C -0.037 4.037 13 C 0.026 3.974 14 H 0.118 0.882 15 O -0.355 6.355 16 C -0.002 4.002 17 N -0.370 5.370 18 C -0.372 4.372 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.578 5.578 22 Si 0.739 3.261 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.218 1.218 26 C -0.401 4.401 27 S 0.361 5.639 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.111 0.889 42 H 0.211 0.789 43 H 0.037 0.963 44 H 0.044 0.956 45 H 0.222 0.778 46 H 0.064 0.936 47 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -9.249 -12.076 28.154 32.000 hybrid contribution 0.938 1.507 -0.862 1.973 sum -8.312 -10.569 27.291 30.424 Atomic orbital electron populations 1.20467 0.85118 1.04177 1.04151 1.27082 1.01854 0.90847 1.02865 1.66076 1.04571 1.31492 1.16082 1.20266 0.90186 0.94201 1.00803 1.20243 0.95524 0.92712 0.99957 1.21251 0.99870 0.94597 0.97800 1.21692 1.01710 0.96867 0.97429 1.20699 0.81775 0.81220 0.86521 1.90732 1.30802 1.72234 1.47499 1.47737 1.32490 1.25370 1.28657 1.21804 0.89529 1.01708 0.93138 1.22190 1.02194 0.92881 0.86474 1.22551 0.80866 1.01686 0.92318 0.88161 1.86627 1.23628 1.34261 1.90944 1.21227 0.96469 0.94849 0.87645 1.42257 1.59545 1.31132 1.04073 1.19277 1.25246 1.06000 0.86714 0.91192 1.24773 1.00353 0.97892 0.98056 1.69695 1.36700 1.22913 1.28537 0.86104 0.77153 0.78754 0.84092 1.20575 1.21873 1.21847 1.26829 1.03127 0.95728 1.14410 1.83963 0.98183 1.13038 1.68732 0.89364 0.90120 0.89172 0.90090 0.90043 0.90204 0.91156 0.88830 0.89017 0.93039 0.91133 0.90398 0.90311 0.88936 0.78910 0.96269 0.95562 0.77763 0.93571 0.80575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.46 36.00 0.38 -0.09 16 2 C 0.05 0.47 7.39 -13.45 -0.10 0.37 16 3 N -0.47 -5.29 10.34 -8.06 -0.08 -5.37 16 4 C 0.08 0.77 6.08 -84.23 -0.51 0.26 16 5 C -0.04 -0.36 5.71 -27.88 -0.16 -0.52 16 6 C -0.10 -1.03 4.40 -26.73 -0.12 -1.15 16 7 C -0.14 -1.28 4.25 -27.89 -0.12 -1.40 16 8 C 0.51 7.02 7.67 -10.99 -0.08 6.94 16 9 O -0.54 -9.78 15.56 5.56 0.09 -9.70 16 10 N -0.61 -7.45 2.80 -181.57 -0.51 -7.96 16 11 C 0.08 0.67 9.98 59.85 0.60 1.27 16 12 C 0.09 1.18 5.10 -4.04 -0.02 1.16 16 13 C 0.09 1.50 3.27 -26.73 -0.09 1.41 16 14 H 0.10 2.07 8.14 -51.93 -0.42 1.65 16 15 O -0.55 -9.23 12.01 -35.23 -0.42 -9.65 16 16 C 0.13 2.63 5.90 -4.05 -0.02 2.60 16 17 N -0.73 -19.41 5.55 -59.91 -0.33 -19.74 16 18 C -0.24 -7.03 9.99 -15.06 -0.15 -7.18 16 19 H 0.07 1.97 7.83 -52.49 -0.41 1.55 16 20 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 21 N -0.93 -29.33 13.06 55.49 0.72 -28.61 16 22 Si 0.91 23.06 29.55 -169.99 -5.02 18.04 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 26 C -0.26 -2.22 11.07 29.12 0.32 -1.90 16 27 S 0.11 0.82 23.18 -107.50 -2.49 -1.67 16 28 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.50 8.03 -51.93 -0.42 0.09 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 1.02 8.03 -51.93 -0.42 0.61 16 34 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 35 H 0.09 0.73 7.40 -51.93 -0.38 0.34 16 36 H 0.09 0.64 8.11 -51.93 -0.42 0.22 16 37 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.48 6.44 -51.93 -0.33 0.15 16 39 H 0.08 0.63 6.88 -51.93 -0.36 0.27 16 40 H 0.08 0.87 8.07 -51.93 -0.42 0.45 16 41 H 0.09 1.40 7.42 -51.93 -0.39 1.01 16 42 H 0.36 4.76 8.79 45.56 0.40 5.16 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.39 11.20 7.67 -40.82 -0.31 10.89 16 46 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 47 H 0.18 1.07 8.06 -52.48 -0.42 0.65 16 LS Contribution 404.42 15.07 6.09 6.09 Total: -1.00 -37.82 404.42 -8.95 -46.76 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -6.82 Total: 10.58 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -0.17 Total: 1.22 kcal Atomic # 7 Polarization: -61.49 SS G_CDS: -0.20 Total: -61.69 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.34 Total: -19.35 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.04 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.49 Total: -1.67 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -37.82 -8.95 -46.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700937653.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.780 kcal (2) G-P(sol) polarization free energy of solvation -37.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds