Wall clock time and date at job start Sat Apr 11 2020 06:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29021 * 124.91577 * 2 1 4 4 C 1.31787 * 117.12723 * 179.97438 * 3 2 1 5 5 C 1.50699 * 122.75233 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.46866 * 305.02631 * 5 4 3 7 7 C 1.52999 * 109.46623 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.46953 * 179.97438 * 7 6 5 9 9 O 1.21279 * 119.99692 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00146 * 180.02562 * 8 7 6 11 11 C 1.46504 * 119.99854 * 359.97438 * 10 8 7 12 12 C 1.46496 * 119.99875 * 180.02562 * 10 8 7 13 13 C 1.53000 * 109.47381 * 89.99618 * 12 10 8 14 14 H 1.08994 * 109.47228 * 304.99860 * 13 12 10 15 15 O 1.42899 * 109.47178 * 65.00034 * 13 12 10 16 16 C 1.53004 * 109.46966 * 184.99843 * 13 12 10 17 17 N 1.46505 * 109.46857 * 180.02562 * 16 13 12 18 18 C 1.36930 * 119.99763 * 179.97438 * 17 16 13 19 19 H 1.07997 * 120.00506 * 0.02562 * 18 17 16 20 20 C 1.38821 * 119.99773 * 179.97438 * 18 17 16 21 21 N 1.31617 * 120.00002 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99726 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47236 * 60.00459 * 22 20 18 24 24 H 1.48504 * 109.46969 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47226 * 299.99902 * 22 20 18 26 26 C 1.33639 * 114.49738 * 0.23162 * 4 3 2 27 27 S 1.70979 * 124.91810 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.46911 * 90.00130 * 1 2 3 29 29 H 1.09004 * 109.47467 * 210.00086 * 1 2 3 30 30 H 1.09000 * 109.47576 * 330.00327 * 1 2 3 31 31 H 1.08993 * 109.47512 * 185.02753 * 5 4 3 32 32 H 1.09000 * 109.47247 * 65.02462 * 5 4 3 33 33 H 1.09000 * 109.47050 * 299.99952 * 6 5 4 34 34 H 1.09001 * 109.46801 * 60.00064 * 6 5 4 35 35 H 1.09000 * 109.47486 * 299.99829 * 7 6 5 36 36 H 1.09001 * 109.47362 * 60.00551 * 7 6 5 37 37 H 1.08994 * 109.46378 * 90.00584 * 11 10 8 38 38 H 1.08999 * 109.46664 * 209.99875 * 11 10 8 39 39 H 1.08999 * 109.46848 * 330.00481 * 11 10 8 40 40 H 1.09000 * 109.47177 * 209.99924 * 12 10 8 41 41 H 1.09000 * 109.47021 * 329.99726 * 12 10 8 42 42 H 0.96706 * 114.00250 * 59.99460 * 15 13 12 43 43 H 1.09002 * 109.46965 * 299.99771 * 16 13 12 44 44 H 1.08998 * 109.47049 * 60.00118 * 16 13 12 45 45 H 0.96999 * 120.00037 * 0.02562 * 17 16 13 46 46 H 0.97000 * 120.00024 * 179.97438 * 21 20 18 47 47 H 1.08002 * 126.03735 * 179.76609 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5307 2.0246 0.0000 6 6 4.2333 2.9495 -1.1820 7 6 5.2274 4.1125 -1.1821 8 6 4.9350 5.0232 -2.3467 9 8 4.0211 4.7674 -3.1019 10 7 5.6890 6.1219 -2.5490 11 6 6.7925 6.4311 -1.6364 12 6 5.4043 7.0074 -3.6808 13 6 4.4073 8.0841 -3.2478 14 1 3.5180 7.6100 -2.8326 15 8 5.0087 8.9192 -2.2564 16 6 4.0146 8.9323 -4.4592 17 7 3.0603 9.9637 -4.0444 18 6 2.5651 10.8481 -4.9650 19 1 2.8775 10.7852 -5.9968 20 6 1.6605 11.8251 -4.5720 21 7 1.2793 11.9015 -3.3146 22 14 0.9843 13.0312 -5.8281 23 1 0.2671 12.2860 -6.8937 24 1 0.0447 13.9670 -5.1597 25 1 2.1039 13.7997 -6.4290 26 6 3.9354 -0.4006 -0.0039 27 16 2.4857 -1.4020 0.0006 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 5.5448 1.6353 -0.0894 32 1 4.4369 2.5834 0.9312 33 1 4.3272 2.3907 -2.1132 34 1 3.2192 3.3388 -1.0925 35 1 5.1332 4.6712 -0.2509 36 1 6.2418 3.7235 -1.2714 37 1 7.7063 5.9602 -1.9987 38 1 6.9340 7.5109 -1.5902 39 1 6.5583 6.0523 -0.6416 40 1 6.3283 7.4804 -4.0134 41 1 4.9788 6.4261 -4.4988 42 1 5.8073 9.3741 -2.5571 43 1 4.9039 9.4065 -4.8743 44 1 3.5558 8.2953 -5.2154 45 1 2.7800 10.0205 -3.1175 46 1 0.6475 12.5844 -3.0400 47 1 4.9546 -0.7580 -0.0079 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700937654.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:04 Heat of formation + Delta-G solvation = -40.725871 kcal Electronic energy + Delta-G solvation = -26542.671596 eV Core-core repulsion = 22659.437196 eV Total energy + Delta-G solvation = -3883.234399 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.32585 -39.91249 -37.50119 -35.20214 -34.98044 -33.95031 -32.47693 -31.31724 -29.85891 -28.91141 -27.79532 -26.71981 -25.28723 -23.55930 -22.68366 -21.75183 -21.12384 -20.00768 -19.11318 -17.90159 -17.12226 -16.95536 -16.47770 -16.23692 -15.74051 -15.39551 -15.29909 -14.97414 -14.63946 -14.38471 -14.13837 -13.73232 -13.60432 -13.33855 -13.10242 -13.07790 -12.87364 -12.60602 -12.54472 -12.50857 -12.32623 -12.16462 -12.00351 -11.60815 -11.53200 -11.30000 -10.89582 -10.87757 -10.76665 -10.62180 -10.16967 -9.93680 -9.89481 -9.71293 -9.70811 -9.55084 -8.98626 -8.84095 -8.44673 -6.86491 -5.69451 -2.98763 0.39765 1.04511 1.41275 2.48718 2.67647 3.00410 3.47836 3.51597 3.53272 3.74694 4.41939 4.51649 4.60742 4.67603 4.79431 4.84650 4.89608 4.96382 5.03426 5.08440 5.10683 5.11871 5.20835 5.29214 5.37830 5.39537 5.41909 5.48003 5.54849 5.61031 5.65744 5.74186 5.85634 5.90436 6.00935 6.05813 6.24849 6.29942 6.51891 6.59966 6.81128 7.37622 7.48287 7.73041 8.06869 8.22688 8.48766 9.59888 10.18480 10.54514 11.52925 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013726 B = 0.001859 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.388742 B =15057.652697 C =16567.912253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.056 3.944 3 N -0.466 5.466 4 C 0.079 3.921 5 C -0.045 4.045 6 C -0.097 4.097 7 C -0.137 4.137 8 C 0.509 3.491 9 O -0.536 6.536 10 N -0.610 5.610 11 C 0.081 3.919 12 C 0.086 3.914 13 C 0.087 3.913 14 H 0.100 0.900 15 O -0.551 6.551 16 C 0.126 3.874 17 N -0.725 5.725 18 C -0.242 4.242 19 H 0.069 0.931 20 C -0.014 4.014 21 N -0.930 5.930 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.265 4.265 27 S 0.103 5.897 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.051 0.949 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.366 0.634 43 H 0.019 0.981 44 H 0.027 0.973 45 H 0.389 0.611 46 H 0.255 0.745 47 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.525 -28.219 10.142 32.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.223 4.223 3 N -0.181 5.181 4 C -0.053 4.053 5 C -0.085 4.085 6 C -0.135 4.135 7 C -0.177 4.177 8 C 0.297 3.703 9 O -0.413 6.413 10 N -0.343 5.343 11 C -0.063 4.063 12 C -0.037 4.037 13 C 0.026 3.974 14 H 0.118 0.882 15 O -0.355 6.355 16 C -0.002 4.002 17 N -0.370 5.370 18 C -0.374 4.374 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.578 5.578 22 Si 0.739 3.261 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.403 4.403 27 S 0.357 5.643 28 H 0.107 0.893 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.069 0.931 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.110 0.890 42 H 0.212 0.788 43 H 0.037 0.963 44 H 0.044 0.956 45 H 0.223 0.777 46 H 0.065 0.935 47 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 10.027 -29.067 9.957 32.320 hybrid contribution 0.740 1.629 -0.750 1.940 sum 10.767 -27.438 9.207 30.880 Atomic orbital electron populations 1.20484 0.85048 1.04305 1.04198 1.27108 1.01896 0.90703 1.02593 1.66090 1.04559 1.31450 1.15992 1.20282 0.90219 0.94171 1.00627 1.20248 0.95355 0.92722 1.00158 1.21253 1.00212 0.94500 0.97553 1.21696 1.01403 0.96847 0.97763 1.20708 0.81765 0.81213 0.86575 1.90732 1.29976 1.73196 1.47348 1.47764 1.32814 1.24555 1.29197 1.21812 0.88496 1.02685 0.93265 1.22199 0.99824 0.92549 0.89127 1.22544 0.95217 0.89394 0.90225 0.88228 1.86620 1.45354 1.63503 1.39989 1.21219 0.93626 0.91252 0.94146 1.42231 1.50599 1.34246 1.09894 1.19183 1.19840 1.07459 0.90884 0.91334 1.24769 1.00239 0.99711 0.96290 1.69676 1.36789 1.36535 1.14847 0.86253 0.78534 0.80913 0.80369 1.21268 1.21673 1.21317 1.26796 1.03021 0.95712 1.14807 1.83944 0.98243 1.13191 1.68924 0.89329 0.90105 0.89006 0.90208 0.89890 0.91366 0.89988 0.88696 0.89143 0.93057 0.90266 0.91135 0.90303 0.88962 0.78803 0.96342 0.95552 0.77667 0.93474 0.80668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.46 36.01 0.38 -0.14 16 2 C 0.06 0.52 7.39 -13.46 -0.10 0.42 16 3 N -0.47 -5.46 10.34 -8.06 -0.08 -5.54 16 4 C 0.08 0.79 6.08 -84.22 -0.51 0.28 16 5 C -0.04 -0.37 5.71 -27.88 -0.16 -0.53 16 6 C -0.10 -1.03 4.40 -26.73 -0.12 -1.15 16 7 C -0.14 -1.28 4.25 -27.88 -0.12 -1.40 16 8 C 0.51 6.99 7.67 -10.98 -0.08 6.90 16 9 O -0.54 -9.74 15.56 5.56 0.09 -9.65 16 10 N -0.61 -7.47 2.84 -181.57 -0.52 -7.99 16 11 C 0.08 0.67 10.06 59.85 0.60 1.27 16 12 C 0.09 1.18 5.06 -4.04 -0.02 1.16 16 13 C 0.09 1.51 3.30 -26.73 -0.09 1.43 16 14 H 0.10 2.05 8.14 -51.93 -0.42 1.63 16 15 O -0.55 -9.35 11.90 -35.23 -0.42 -9.77 16 16 C 0.13 2.64 5.92 -4.04 -0.02 2.61 16 17 N -0.72 -19.46 5.49 -59.90 -0.33 -19.79 16 18 C -0.24 -7.09 9.99 -15.06 -0.15 -7.24 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 20 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -29.39 13.06 55.49 0.72 -28.66 16 22 Si 0.91 23.11 29.55 -169.99 -5.02 18.09 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 C -0.26 -2.15 11.07 29.12 0.32 -1.82 16 27 S 0.10 0.77 23.18 -107.50 -2.49 -1.72 16 28 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.45 8.03 -51.93 -0.42 0.04 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 34 H 0.08 1.12 8.03 -51.93 -0.42 0.70 16 35 H 0.09 0.77 7.40 -51.93 -0.38 0.38 16 36 H 0.09 0.60 8.11 -51.93 -0.42 0.18 16 37 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.08 0.67 7.10 -51.93 -0.37 0.30 16 39 H 0.07 0.49 6.44 -51.93 -0.33 0.15 16 40 H 0.08 0.87 8.07 -51.93 -0.42 0.45 16 41 H 0.09 1.38 7.42 -51.93 -0.39 1.00 16 42 H 0.37 4.90 9.04 45.56 0.41 5.31 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.39 11.26 7.54 -40.82 -0.31 10.95 16 46 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 47 H 0.18 0.96 8.06 -52.49 -0.42 0.53 16 LS Contribution 404.75 15.07 6.10 6.10 Total: -1.00 -37.82 404.75 -8.94 -46.75 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -6.81 Total: 10.89 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -0.17 Total: 1.29 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: -0.20 Total: -61.99 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.33 Total: -19.42 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.09 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.49 Total: -1.72 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -37.82 -8.94 -46.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700937654.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.028 kcal (2) G-P(sol) polarization free energy of solvation -37.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds