Wall clock time and date at job start Sat Apr 11 2020 06:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 120.00388 * 2 1 4 4 C 1.53004 * 109.47312 * 269.72870 * 3 2 1 5 5 H 1.09001 * 109.47175 * 59.99465 * 4 3 2 6 6 O 1.42902 * 109.46584 * 299.99819 * 4 3 2 7 7 C 1.52997 * 109.47089 * 179.97438 * 4 3 2 8 8 N 1.46499 * 109.46818 * 184.99668 * 7 4 3 9 9 C 1.36944 * 120.00015 * 179.97438 * 8 7 4 10 10 H 1.07997 * 119.99717 * 0.02562 * 9 8 7 11 11 C 1.38813 * 120.00148 * 179.97438 * 9 8 7 12 12 N 1.31615 * 119.99762 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99786 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47247 * 60.00648 * 13 11 9 15 15 H 1.48504 * 109.46783 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47048 * 300.00326 * 13 11 9 17 17 C 1.34782 * 120.00132 * 179.72322 * 2 1 3 18 18 O 1.21678 * 120.00210 * 175.89153 * 17 2 1 19 19 C 1.46684 * 119.99704 * 355.89672 * 17 2 1 20 20 S 1.76215 * 126.13221 * 85.57641 * 19 17 2 21 21 C 1.70952 * 90.31332 * 179.97438 * 20 19 17 22 22 N 1.29432 * 110.39216 * 0.34492 * 21 20 19 23 23 C 1.30938 * 117.36178 * 359.72983 * 22 21 20 24 24 C 1.50705 * 122.90558 * 179.97438 * 23 22 21 25 25 C 1.53002 * 109.47072 * 238.21855 * 24 23 22 26 26 C 1.53007 * 109.46793 * 358.21150 * 24 23 22 27 27 C 1.53002 * 109.47438 * 118.21278 * 24 23 22 28 28 H 1.08998 * 109.47328 * 95.37937 * 1 2 3 29 29 H 1.09003 * 109.47563 * 215.37858 * 1 2 3 30 30 H 1.09000 * 109.47118 * 335.37938 * 1 2 3 31 31 H 1.09005 * 109.46681 * 29.72289 * 3 2 1 32 32 H 1.08994 * 109.47641 * 149.72127 * 3 2 1 33 33 H 0.96703 * 113.99714 * 299.99984 * 6 4 3 34 34 H 1.08994 * 109.47181 * 304.99719 * 7 4 3 35 35 H 1.09002 * 109.47204 * 65.00103 * 7 4 3 36 36 H 0.96997 * 120.00275 * 359.97438 * 8 7 4 37 37 H 0.97005 * 119.99772 * 179.97438 * 12 11 9 38 38 H 1.08005 * 124.80496 * 180.10394 * 21 20 19 39 39 H 1.08999 * 109.47440 * 60.82388 * 25 24 23 40 40 H 1.09004 * 109.47318 * 180.82977 * 25 24 23 41 41 H 1.09005 * 109.46919 * 300.81990 * 25 24 23 42 42 H 1.08999 * 109.47018 * 60.00378 * 26 24 23 43 43 H 1.09001 * 109.46924 * 180.02562 * 26 24 23 44 44 H 1.09000 * 109.47099 * 300.00221 * 26 24 23 45 45 H 1.08996 * 109.46708 * 67.06861 * 27 24 23 46 46 H 1.08991 * 109.46920 * 187.07085 * 27 24 23 47 47 H 1.09001 * 109.46641 * 307.07502 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4585 1.7070 -1.4425 5 1 1.5082 1.8361 -1.9606 6 8 3.2335 0.7094 -2.1105 7 6 3.2230 3.0322 -1.4424 8 7 3.3686 3.5120 -2.8190 9 6 4.0231 4.6887 -3.0683 10 1 4.4323 5.2629 -2.2502 11 6 4.1616 5.1431 -4.3727 12 7 3.6634 4.4430 -5.3697 13 14 5.0537 6.7486 -4.7127 14 1 6.4499 6.6540 -4.2158 15 1 5.0648 7.0087 -6.1747 16 1 4.3552 7.8597 -4.0179 17 6 2.1389 -1.1672 0.0056 18 8 3.3533 -1.1690 -0.0698 19 6 1.4082 -2.4354 0.1027 20 16 0.7078 -3.3364 -1.2400 21 6 0.1465 -4.5335 -0.1562 22 7 0.4723 -4.2299 1.0591 23 6 1.1445 -3.1214 1.2430 24 6 1.5867 -2.6483 2.6038 25 6 1.0047 -1.2595 2.8748 26 6 1.0897 -3.6265 3.6702 27 6 3.1145 -2.5786 2.6480 28 1 -0.3634 -0.0963 -1.0231 29 1 -0.3634 -0.8379 0.5950 30 1 -0.3633 0.9342 0.4281 31 1 1.6063 2.0296 0.5096 32 1 3.1477 1.1396 0.5181 33 1 4.0943 0.5419 -1.7029 34 1 2.6729 3.7690 -0.8572 35 1 4.2095 2.8826 -1.0036 36 1 3.0015 2.9961 -3.5538 37 1 3.7598 4.7607 -6.2812 38 1 -0.4054 -5.4160 -0.4444 39 1 -0.0839 -1.3121 2.8579 40 1 1.3365 -0.9110 3.8529 41 1 1.3469 -0.5659 2.1068 42 1 1.5043 -4.6159 3.4771 43 1 1.4091 -3.2841 4.6545 44 1 0.0013 -3.6762 3.6387 45 1 3.4618 -1.7923 1.9778 46 1 3.4389 -2.3587 3.6650 47 1 3.5311 -3.5351 2.3325 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700953121.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:09 Heat of formation + Delta-G solvation = -23.703920 kcal Electronic energy + Delta-G solvation = -28657.777748 eV Core-core repulsion = 24775.281476 eV Total energy + Delta-G solvation = -3882.496272 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.10856 -39.52418 -37.26297 -36.30728 -35.38464 -33.97989 -31.44807 -30.82192 -29.23552 -27.63355 -27.46517 -27.00496 -26.24492 -25.00637 -22.96503 -21.96118 -21.21680 -20.58633 -18.60935 -18.18609 -17.17069 -17.13140 -16.75065 -15.98239 -15.60535 -15.17774 -15.04861 -14.86351 -14.46695 -14.34882 -14.11402 -13.80940 -13.66046 -13.48870 -13.14329 -12.96268 -12.72734 -12.53396 -12.41947 -12.36433 -12.22038 -12.14344 -11.84578 -11.52783 -11.24385 -11.19878 -10.93443 -10.88100 -10.79112 -10.68092 -10.36870 -10.17985 -9.93679 -9.76796 -9.66085 -9.60386 -9.10153 -8.87754 -8.58540 -6.90691 -5.73365 -3.02833 0.20602 0.82885 1.35169 2.38832 2.61847 2.85870 3.45188 3.49246 3.50708 3.77834 4.28008 4.53169 4.58210 4.61987 4.72214 4.79805 4.92759 4.98736 4.99755 5.07990 5.20341 5.29279 5.38751 5.46477 5.47648 5.53528 5.56408 5.59696 5.63008 5.68433 5.70013 5.71712 5.85975 5.97363 6.00035 6.09391 6.17122 6.23437 6.36813 6.52824 6.74236 7.11389 7.36277 7.69632 7.95202 8.20957 8.44942 9.56078 10.14084 10.49612 11.49001 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021783 B = 0.002562 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.099163 B =10924.918756 C =11546.323672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.596 5.596 3 C 0.085 3.915 4 C 0.086 3.914 5 H 0.096 0.904 6 O -0.548 6.548 7 C 0.127 3.873 8 N -0.725 5.725 9 C -0.243 4.243 10 H 0.069 0.931 11 C -0.013 4.013 12 N -0.930 5.930 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 C 0.607 3.393 18 O -0.509 6.509 19 C -0.270 4.270 20 S 0.194 5.806 21 C 0.010 3.990 22 N -0.462 5.462 23 C 0.120 3.880 24 C 0.002 3.998 25 C -0.152 4.152 26 C -0.126 4.126 27 C -0.149 4.149 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.375 0.625 34 H 0.024 0.976 35 H 0.021 0.979 36 H 0.388 0.612 37 H 0.256 0.744 38 H 0.203 0.797 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.058 0.942 45 H 0.075 0.925 46 H 0.062 0.938 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.192 -18.503 17.441 27.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.329 5.329 3 C -0.038 4.038 4 C 0.025 3.975 5 H 0.114 0.886 6 O -0.353 6.353 7 C -0.002 4.002 8 N -0.370 5.370 9 C -0.374 4.374 10 H 0.087 0.913 11 C -0.209 4.209 12 N -0.578 5.578 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 C 0.391 3.609 18 O -0.385 6.385 19 C -0.395 4.395 20 S 0.450 5.550 21 C -0.286 4.286 22 N -0.175 5.175 23 C -0.017 4.017 24 C -0.001 4.001 25 C -0.210 4.210 26 C -0.183 4.183 27 C -0.207 4.207 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.222 0.778 34 H 0.042 0.958 35 H 0.039 0.961 36 H 0.223 0.777 37 H 0.065 0.935 38 H 0.220 0.780 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.093 0.907 46 H 0.081 0.919 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.249 -18.648 16.295 27.199 hybrid contribution 0.875 0.908 0.537 1.370 sum -10.374 -17.740 16.831 26.563 Atomic orbital electron populations 1.21924 0.79343 1.03350 1.02417 1.47620 1.06990 1.05576 1.72694 1.22389 0.98237 0.84005 0.99182 1.22485 0.95775 0.88377 0.90826 0.88602 1.86545 1.33242 1.58694 1.56802 1.21232 0.96774 0.92435 0.89787 1.42238 1.68168 1.25250 1.01325 1.19174 1.28325 0.97824 0.92107 0.91326 1.24759 1.01503 0.99024 0.95613 1.69672 1.50349 1.39236 0.98593 0.86259 0.79562 0.83402 0.76892 1.21258 1.21662 1.21286 1.16565 0.86394 0.81714 0.76177 1.90802 1.12925 1.86534 1.48203 1.25395 1.12479 1.04291 0.97292 1.84324 1.45870 1.14455 1.10372 1.28658 1.04057 1.04663 0.91191 1.65981 1.13623 1.16356 1.21522 1.20401 0.96254 0.89699 0.95358 1.19253 0.96359 0.95938 0.88525 1.22155 1.00844 0.95124 1.02875 1.21692 1.01404 0.98645 0.96593 1.22064 0.92594 1.03348 1.02646 0.92074 0.91355 0.90147 0.89181 0.89292 0.77766 0.95798 0.96108 0.77748 0.93452 0.77998 0.92389 0.91528 0.91340 0.92133 0.92602 0.92278 0.90653 0.91912 0.92524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.64 9.53 59.84 0.57 1.21 16 2 N -0.60 -6.92 1.67 -183.13 -0.31 -7.22 16 3 C 0.08 1.04 5.18 -4.04 -0.02 1.02 16 4 C 0.09 1.41 3.27 -26.73 -0.09 1.32 16 5 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 6 O -0.55 -10.27 12.00 -48.46 -0.58 -10.85 16 7 C 0.13 2.50 5.90 -4.04 -0.02 2.48 16 8 N -0.73 -18.84 5.55 -59.91 -0.33 -19.18 16 9 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 10 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 11 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 12 N -0.93 -28.85 13.06 55.49 0.72 -28.13 16 13 Si 0.91 22.71 29.55 -169.99 -5.02 17.68 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 17 C 0.61 8.13 4.37 -12.85 -0.06 8.07 16 18 O -0.51 -8.30 13.44 -8.02 -0.11 -8.41 16 19 C -0.27 -3.18 4.17 -37.09 -0.15 -3.33 16 20 S 0.19 1.86 23.21 -107.50 -2.50 -0.63 16 21 C 0.01 0.08 12.22 51.75 0.63 0.71 16 22 N -0.46 -4.80 9.53 -11.53 -0.11 -4.91 16 23 C 0.12 1.32 5.38 -83.89 -0.45 0.87 16 24 C 0.00 0.02 0.75 -155.65 -0.12 -0.10 16 25 C -0.15 -1.33 7.47 37.16 0.28 -1.05 16 26 C -0.13 -1.09 7.80 37.16 0.29 -0.80 16 27 C -0.15 -1.59 8.21 37.16 0.31 -1.28 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.56 5.99 -51.93 -0.31 0.25 16 30 H 0.08 0.56 7.83 -51.93 -0.41 0.15 16 31 H 0.09 0.89 7.85 -51.93 -0.41 0.48 16 32 H 0.09 1.14 7.48 -51.93 -0.39 0.75 16 33 H 0.37 6.64 8.32 45.56 0.38 7.02 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.39 10.89 7.67 -40.82 -0.31 10.58 16 37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.20 0.89 8.06 -52.48 -0.42 0.47 16 39 H 0.06 0.46 7.99 -51.93 -0.41 0.05 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.66 4.17 -51.93 -0.22 0.45 16 42 H 0.06 0.56 8.11 -51.93 -0.42 0.14 16 43 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.96 5.17 -51.93 -0.27 0.69 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.06 0.64 8.13 -51.93 -0.42 0.21 16 LS Contribution 387.15 15.07 5.83 5.83 Total: -1.00 -34.66 387.15 -8.02 -42.69 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -6.54 Total: 11.55 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 0.92 Total: 1.57 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -0.02 Total: -59.44 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.69 Total: -19.25 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.68 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.50 Total: -0.63 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.66 -8.02 -42.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700953121.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.983 kcal (2) G-P(sol) polarization free energy of solvation -34.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds