Wall clock time and date at job start Sat Apr 11 2020 06:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.46925 * 2 1 4 4 C 1.50701 * 109.46994 * 180.02562 * 3 2 1 5 5 N 1.29429 * 124.80280 * 90.02326 * 4 3 2 6 6 C 1.30949 * 117.36401 * 179.73127 * 5 4 3 7 7 C 1.50693 * 122.90484 * 179.97438 * 6 5 4 8 8 C 1.35661 * 114.18889 * 0.02562 * 6 5 4 9 9 C 1.46687 * 126.12917 * 179.97438 * 8 6 5 10 10 O 1.21681 * 119.99646 * 350.93634 * 9 8 6 11 11 N 1.34775 * 119.99661 * 170.93705 * 9 8 6 12 12 C 1.46495 * 120.00334 * 0.61826 * 11 9 8 13 13 C 1.46509 * 119.99416 * 180.62000 * 11 9 8 14 14 C 1.52999 * 109.46691 * 90.00196 * 13 11 9 15 15 H 1.08998 * 109.47494 * 304.99381 * 14 13 11 16 16 O 1.42905 * 109.47506 * 64.99916 * 14 13 11 17 17 C 1.53001 * 109.47002 * 184.99758 * 14 13 11 18 18 N 1.46498 * 109.47541 * 179.97438 * 17 14 13 19 19 C 1.36933 * 120.00284 * 179.97438 * 18 17 14 20 20 H 1.08005 * 119.99750 * 0.02562 * 19 18 17 21 21 C 1.38810 * 120.00443 * 180.02562 * 19 18 17 22 22 N 1.31626 * 119.99657 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00409 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47018 * 60.00239 * 23 21 19 25 25 H 1.48498 * 109.47159 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47116 * 300.00094 * 23 21 19 27 27 S 1.70950 * 124.80648 * 269.72152 * 4 3 2 28 28 H 1.09007 * 109.47214 * 300.00050 * 1 2 3 29 29 H 1.09002 * 109.47629 * 60.00030 * 1 2 3 30 30 H 1.09000 * 109.47226 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47425 * 240.00398 * 2 1 3 32 32 H 1.08994 * 109.47344 * 120.00017 * 2 1 3 33 33 H 1.08994 * 109.46984 * 60.00578 * 3 2 1 34 34 H 1.08998 * 109.47107 * 299.99653 * 3 2 1 35 35 H 1.09007 * 109.46836 * 90.02838 * 7 6 5 36 36 H 1.08998 * 109.47559 * 210.02837 * 7 6 5 37 37 H 1.09000 * 109.47117 * 330.02843 * 7 6 5 38 38 H 1.09004 * 109.46540 * 83.51561 * 12 11 9 39 39 H 1.09002 * 109.47069 * 203.51081 * 12 11 9 40 40 H 1.08991 * 109.47414 * 323.51150 * 12 11 9 41 41 H 1.08996 * 109.46925 * 209.99564 * 13 11 9 42 42 H 1.08997 * 109.47275 * 330.00285 * 13 11 9 43 43 H 0.96700 * 113.99361 * 59.99632 * 16 14 13 44 44 H 1.09005 * 109.47065 * 300.00160 * 17 14 13 45 45 H 1.09007 * 109.46873 * 59.99640 * 17 14 13 46 46 H 0.97002 * 119.99673 * 0.02562 * 18 17 14 47 47 H 0.96994 * 119.99804 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.2852 1.4432 -1.0637 6 6 5.5837 1.4486 -0.8947 7 6 6.5588 1.4493 -2.0437 8 6 5.9752 1.4523 0.4041 9 6 7.3592 1.4580 0.8903 10 8 8.2786 1.2938 0.1103 11 7 7.6122 1.6451 2.2008 12 6 6.5047 1.8292 3.1417 13 6 8.9951 1.6644 2.6842 14 6 9.5314 3.0966 2.6384 15 1 9.4180 3.4950 1.6302 16 8 8.7984 3.9094 3.5571 17 6 11.0120 3.0993 3.0241 18 7 11.5258 4.4705 2.9796 19 6 12.8359 4.7212 3.2892 20 1 13.4906 3.9079 3.5657 21 6 13.3226 6.0205 3.2476 22 7 12.5246 7.0117 2.9110 23 14 15.1100 6.3624 3.6692 24 1 15.9904 5.6194 2.7321 25 1 15.3767 7.8184 3.5506 26 1 15.3835 5.9213 5.0605 27 16 4.5233 1.4492 1.4026 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 6.7903 2.4772 -2.3230 36 1 7.4742 0.9393 -1.7438 37 1 6.1171 0.9321 -2.8954 38 1 6.1152 0.8556 3.4394 39 1 6.8613 2.3627 4.0228 40 1 5.7135 2.4063 2.6632 41 1 9.0265 1.2974 3.7101 42 1 9.6104 1.0255 2.0507 43 1 8.8545 3.6130 4.4758 44 1 11.1255 2.7009 4.0323 45 1 11.5712 2.4792 2.3233 46 1 10.9377 5.2010 2.7316 47 1 12.8647 7.9196 2.8816 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700956603.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:13 Heat of formation + Delta-G solvation = -34.607641 kcal Electronic energy + Delta-G solvation = -27271.360024 eV Core-core repulsion = 23388.390930 eV Total energy + Delta-G solvation = -3882.969093 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.61764 -39.61055 -37.49030 -35.69017 -35.38005 -34.00225 -32.10086 -31.36613 -29.94890 -28.52294 -28.29898 -27.00966 -25.29534 -23.63100 -23.01422 -21.73923 -21.38445 -21.02735 -18.81244 -18.40605 -17.15368 -16.99766 -16.52134 -16.12529 -15.59803 -15.44778 -15.34050 -14.92504 -14.60413 -14.43317 -14.06909 -13.82142 -13.75023 -13.59612 -13.25941 -13.13765 -12.97332 -12.67530 -12.56805 -12.44288 -12.29287 -12.10129 -12.02210 -11.66796 -11.58064 -11.51309 -11.23082 -10.92969 -10.79874 -10.71951 -10.21903 -10.10953 -9.88316 -9.75246 -9.68778 -9.53783 -8.99491 -8.87106 -8.53516 -6.90025 -5.72483 -3.02115 0.03902 0.96327 1.36167 2.24809 2.73836 3.04167 3.45803 3.49778 3.51348 3.67835 4.33653 4.42221 4.51489 4.55796 4.56188 4.69409 4.80791 4.89017 4.94024 5.00271 5.06219 5.14099 5.17416 5.22273 5.30213 5.42185 5.53680 5.57316 5.59910 5.63270 5.64110 5.69349 5.73447 5.77469 5.79711 5.97676 6.18828 6.24841 6.36705 6.54523 6.73912 7.09921 7.46333 7.70103 7.95411 8.00536 8.45608 9.56876 10.14819 10.50609 11.49803 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025079 B = 0.002097 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.196124 B =13351.337541 C =13664.474967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.047 4.047 4 C 0.036 3.964 5 N -0.480 5.480 6 C 0.154 3.846 7 C -0.095 4.095 8 C -0.303 4.303 9 C 0.595 3.405 10 O -0.519 6.519 11 N -0.601 5.601 12 C 0.069 3.931 13 C 0.089 3.911 14 C 0.085 3.915 15 H 0.101 0.899 16 O -0.550 6.550 17 C 0.127 3.873 18 N -0.725 5.725 19 C -0.243 4.243 20 H 0.069 0.931 21 C -0.013 4.013 22 N -0.930 5.930 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 S 0.185 5.815 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.097 0.903 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.098 0.902 43 H 0.366 0.634 44 H 0.020 0.980 45 H 0.028 0.972 46 H 0.389 0.611 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.698 -16.519 -1.772 30.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.088 4.088 4 C -0.238 4.238 5 N -0.195 5.195 6 C 0.016 3.984 7 C -0.153 4.153 8 C -0.427 4.427 9 C 0.382 3.618 10 O -0.397 6.397 11 N -0.333 5.333 12 C -0.076 4.076 13 C -0.034 4.034 14 C 0.025 3.975 15 H 0.119 0.881 16 O -0.354 6.354 17 C -0.002 4.002 18 N -0.370 5.370 19 C -0.375 4.375 20 H 0.087 0.913 21 C -0.209 4.209 22 N -0.578 5.578 23 Si 0.739 3.261 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.213 1.213 27 S 0.444 5.556 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.100 0.900 36 H 0.122 0.878 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.116 0.884 40 H 0.091 0.909 41 H 0.102 0.898 42 H 0.116 0.884 43 H 0.213 0.787 44 H 0.037 0.963 45 H 0.046 0.954 46 H 0.223 0.777 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -25.701 -16.284 -2.088 30.497 hybrid contribution 1.427 0.272 0.017 1.452 sum -24.275 -16.013 -2.071 29.154 Atomic orbital electron populations 1.21762 0.94795 1.02157 1.02176 1.21525 0.96367 0.94851 1.02956 1.20392 0.84896 0.98962 1.04528 1.27866 1.02126 1.00015 0.93812 1.66152 1.04271 1.17135 1.31931 1.20657 0.90034 0.94078 0.93659 1.20727 0.97189 1.03895 0.93523 1.25390 0.97685 1.22270 0.97306 1.16750 0.86152 0.76850 0.82069 1.90798 1.44570 1.49961 1.54349 1.47512 1.07657 1.71420 1.06683 1.22035 0.89272 1.01651 0.94665 1.22307 0.81206 0.99207 1.00649 1.22569 0.91447 0.88863 0.94615 0.88094 1.86635 1.73023 1.55977 1.19794 1.21208 0.91059 0.90005 0.97900 1.42223 1.09799 1.02055 1.82884 1.19176 0.86929 0.92540 1.38821 0.91307 1.24766 0.98029 0.95696 1.02431 1.69677 1.34594 0.99138 1.54402 0.86252 0.84797 0.76905 0.78114 1.21248 1.21669 1.21299 1.84255 0.95353 1.66473 1.09509 0.92415 0.92351 0.92274 0.91187 0.91629 0.89413 0.88717 0.90034 0.87790 0.90793 0.91934 0.88424 0.90946 0.89754 0.88388 0.78735 0.96266 0.95448 0.77664 0.93457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.91 37.15 0.37 -0.27 16 2 C -0.12 -0.66 5.92 -26.73 -0.16 -0.82 16 3 C -0.05 -0.30 5.79 -27.88 -0.16 -0.47 16 4 C 0.04 0.35 6.64 -13.29 -0.09 0.26 16 5 N -0.48 -5.92 10.50 -7.70 -0.08 -6.00 16 6 C 0.15 2.03 6.79 -83.89 -0.57 1.46 16 7 C -0.09 -1.17 9.81 36.00 0.35 -0.81 16 8 C -0.30 -3.89 6.24 -37.09 -0.23 -4.12 16 9 C 0.59 8.64 7.62 -12.85 -0.10 8.54 16 10 O -0.52 -8.95 13.84 5.21 0.07 -8.88 16 11 N -0.60 -7.43 2.84 -183.13 -0.52 -7.95 16 12 C 0.07 0.61 8.71 59.84 0.52 1.13 16 13 C 0.09 1.14 5.04 -4.04 -0.02 1.12 16 14 C 0.09 1.42 3.30 -26.73 -0.09 1.33 16 15 H 0.10 1.99 8.14 -51.93 -0.42 1.56 16 16 O -0.55 -8.96 12.04 -35.23 -0.42 -9.38 16 17 C 0.13 2.54 5.92 -4.04 -0.02 2.52 16 18 N -0.72 -18.96 5.49 -59.91 -0.33 -19.29 16 19 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16 20 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -29.00 13.06 55.49 0.72 -28.27 16 23 Si 0.91 22.80 29.55 -169.99 -5.02 17.78 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 S 0.18 1.65 18.12 -107.50 -1.95 -0.30 16 28 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.99 8.14 -51.92 -0.42 0.57 16 36 H 0.10 1.41 5.84 -51.93 -0.30 1.11 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.43 7.82 -51.93 -0.41 0.02 16 39 H 0.10 0.76 7.26 -51.93 -0.38 0.38 16 40 H 0.07 0.66 4.62 -23.80 -0.11 0.55 16 41 H 0.08 0.83 8.07 -51.93 -0.42 0.41 16 42 H 0.10 1.34 7.41 -51.93 -0.38 0.96 16 43 H 0.37 4.60 9.04 45.56 0.41 5.01 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.39 11.01 7.54 -40.82 -0.31 10.70 16 47 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 395.39 15.07 5.96 5.96 Total: -1.00 -35.62 395.39 -8.53 -44.14 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -6.51 Total: 9.92 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -0.44 Total: 2.27 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: -0.20 Total: -61.52 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.35 Total: -18.26 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -1.95 Total: -0.30 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.62 -8.53 -44.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700956603.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.537 kcal (2) G-P(sol) polarization free energy of solvation -35.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds