Wall clock time and date at job start Sat Apr 11 2020 06:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46503 * 119.99942 * 2 1 4 4 C 1.53003 * 109.46950 * 269.99882 * 3 2 1 5 5 H 1.09003 * 109.46807 * 304.99900 * 4 3 2 6 6 O 1.42898 * 109.47292 * 64.99756 * 4 3 2 7 7 C 1.52995 * 109.47167 * 185.00542 * 4 3 2 8 8 N 1.46500 * 109.47227 * 180.02562 * 7 4 3 9 9 C 1.36943 * 120.00136 * 179.97438 * 8 7 4 10 10 H 1.07995 * 119.99815 * 359.97438 * 9 8 7 11 11 C 1.38812 * 119.99987 * 179.97438 * 9 8 7 12 12 N 1.31617 * 119.99731 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99891 * 179.97438 * 11 9 8 14 14 H 1.48491 * 109.47045 * 90.00032 * 13 11 9 15 15 H 1.48497 * 109.46935 * 210.00167 * 13 11 9 16 16 H 1.48499 * 109.47047 * 329.99890 * 13 11 9 17 17 C 1.34776 * 120.00077 * 179.97438 * 2 1 3 18 18 O 1.21681 * 119.99898 * 182.78324 * 17 2 1 19 19 C 1.46682 * 119.99855 * 2.78780 * 17 2 1 20 20 C 1.35657 * 126.13214 * 187.54569 * 19 17 2 21 21 N 1.30946 * 114.19345 * 179.82063 * 20 19 17 22 22 C 1.29423 * 117.36244 * 0.49014 * 21 20 19 23 23 C 1.50702 * 124.80831 * 179.76621 * 22 21 20 24 24 C 1.53002 * 109.46942 * 59.95038 * 23 22 21 25 25 C 1.52999 * 109.47585 * 179.97438 * 23 22 21 26 26 C 1.53007 * 109.46465 * 299.95637 * 23 22 21 27 27 S 1.70955 * 110.39298 * 359.72359 * 22 21 20 28 28 H 1.09003 * 109.46949 * 94.74782 * 1 2 3 29 29 H 1.08999 * 109.47375 * 214.74960 * 1 2 3 30 30 H 1.09003 * 109.46769 * 334.74777 * 1 2 3 31 31 H 1.09003 * 109.47072 * 150.00108 * 3 2 1 32 32 H 1.08996 * 109.47193 * 29.99613 * 3 2 1 33 33 H 0.96702 * 113.99439 * 60.00363 * 6 4 3 34 34 H 1.09003 * 109.46732 * 299.99403 * 7 4 3 35 35 H 1.09000 * 109.47864 * 59.99254 * 7 4 3 36 36 H 0.97000 * 120.00168 * 359.97438 * 8 7 4 37 37 H 0.97007 * 119.99849 * 179.97438 * 12 11 9 38 38 H 1.08005 * 122.90200 * 0.02562 * 20 19 17 39 39 H 1.09000 * 109.46777 * 60.00827 * 24 23 22 40 40 H 1.08998 * 109.46572 * 180.02562 * 24 23 22 41 41 H 1.08992 * 109.47244 * 300.00637 * 24 23 22 42 42 H 1.08996 * 109.47423 * 59.99082 * 25 23 22 43 43 H 1.09001 * 109.47178 * 179.97438 * 25 23 22 44 44 H 1.09000 * 109.46261 * 299.99701 * 25 23 22 45 45 H 1.08999 * 109.47282 * 59.99974 * 26 23 22 46 46 H 1.09001 * 109.46806 * 179.97438 * 26 23 22 47 47 H 1.08998 * 109.47391 * 299.99402 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 2.9643 0.9130 -1.9815 6 8 1.2061 1.9934 -2.0815 7 6 3.3239 2.9680 -1.4444 8 7 3.5676 3.3912 -2.8256 9 6 4.3277 4.5021 -3.0774 10 1 4.7472 5.0664 -2.2578 11 6 4.5590 4.9028 -4.3862 12 7 4.0481 4.2147 -5.3851 13 14 5.5953 6.4186 -4.7296 14 1 7.0208 6.0242 -4.8608 15 1 5.1393 7.0544 -5.9917 16 1 5.4494 7.3822 -3.6091 17 6 2.1389 -1.1672 0.0005 18 8 3.3547 -1.1677 0.0517 19 6 1.4068 -2.4368 -0.0607 20 6 1.9416 -3.6759 0.0763 21 7 1.0706 -4.6494 -0.0156 22 6 -0.1637 -4.3250 -0.2305 23 6 -1.2993 -5.3059 -0.3698 24 6 -1.4225 -6.1290 0.9140 25 6 -2.6036 -4.5448 -0.6154 26 6 -1.0243 -6.2400 -1.5500 27 16 -0.3239 -2.6260 -0.3329 28 1 -0.3633 -0.0851 -1.0242 29 1 -0.3634 -0.8444 0.5857 30 1 -0.3633 0.9295 0.4384 31 1 3.1500 1.1384 0.5138 32 1 1.6084 2.0284 0.5137 33 1 0.6956 2.6949 -1.6543 34 1 2.8121 3.7653 -0.9055 35 1 4.2747 2.7521 -0.9570 36 1 3.1905 2.8845 -3.5619 37 1 4.2095 4.4949 -6.2997 38 1 2.9942 -3.8448 0.2496 39 1 -1.6184 -5.4635 1.7548 40 1 -2.2436 -6.8387 0.8131 41 1 -0.4933 -6.6712 1.0886 42 1 -2.5155 -3.9585 -1.5300 43 1 -3.4248 -5.2543 -0.7166 44 1 -2.7995 -3.8791 0.2253 45 1 -0.0951 -6.7823 -1.3754 46 1 -1.8454 -6.9498 -1.6506 47 1 -0.9365 -5.6537 -2.4647 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700982502.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:15 Heat of formation + Delta-G solvation = -30.655608 kcal Electronic energy + Delta-G solvation = -27406.425378 eV Core-core repulsion = 23523.627658 eV Total energy + Delta-G solvation = -3882.797720 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.49820 -39.73940 -37.55372 -36.92468 -35.37665 -34.00186 -31.53274 -30.71341 -29.27085 -27.90421 -27.69120 -27.18167 -26.39586 -25.06244 -23.06395 -21.63259 -21.20756 -20.80067 -18.60541 -18.42107 -17.15781 -16.87766 -16.58115 -16.27328 -15.76253 -15.27286 -15.08407 -14.85487 -14.73995 -14.44524 -14.19157 -14.05263 -13.69880 -13.60427 -13.27063 -13.08430 -12.96345 -12.64967 -12.60399 -12.45715 -12.13227 -12.12177 -12.05146 -11.62587 -11.58252 -11.47894 -11.41071 -10.93057 -10.81382 -10.71493 -10.29085 -10.15539 -9.84644 -9.74543 -9.69706 -9.56856 -9.18892 -8.87851 -8.57634 -6.90236 -5.72903 -3.02470 0.04166 0.94930 1.38202 2.27344 2.74323 3.05006 3.45342 3.49802 3.51840 3.62111 4.27900 4.30325 4.42129 4.56676 4.57921 4.70102 4.75860 4.89877 4.97856 5.05562 5.08821 5.12191 5.16753 5.20887 5.30183 5.40348 5.42289 5.44426 5.48133 5.57013 5.62170 5.64671 5.72397 5.78389 5.85253 5.94601 5.97500 6.20659 6.34469 6.54406 6.73385 7.07966 7.42917 7.70481 7.93052 8.01139 8.45216 9.56592 10.14493 10.50282 11.49482 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023473 B = 0.002127 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.549124 B =13161.587716 C =13332.011067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.601 5.601 3 C 0.089 3.911 4 C 0.086 3.914 5 H 0.100 0.900 6 O -0.550 6.550 7 C 0.127 3.873 8 N -0.725 5.725 9 C -0.242 4.242 10 H 0.070 0.930 11 C -0.014 4.014 12 N -0.930 5.930 13 Si 0.908 3.092 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.282 1.282 17 C 0.593 3.407 18 O -0.522 6.522 19 C -0.301 4.301 20 C 0.122 3.878 21 N -0.479 5.479 22 C 0.040 3.960 23 C 0.007 3.993 24 C -0.134 4.134 25 C -0.156 4.156 26 C -0.135 4.135 27 S 0.200 5.800 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.367 0.633 34 H 0.020 0.980 35 H 0.028 0.972 36 H 0.389 0.611 37 H 0.255 0.745 38 H 0.185 0.815 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.067 0.933 46 H 0.066 0.934 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.027 -19.784 15.321 30.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.333 5.333 3 C -0.034 4.034 4 C 0.025 3.975 5 H 0.118 0.882 6 O -0.354 6.354 7 C -0.002 4.002 8 N -0.370 5.370 9 C -0.374 4.374 10 H 0.088 0.912 11 C -0.210 4.210 12 N -0.578 5.578 13 Si 0.739 3.261 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 C 0.380 3.620 18 O -0.400 6.400 19 C -0.425 4.425 20 C -0.036 4.036 21 N -0.193 5.193 22 C -0.234 4.234 23 C 0.003 3.997 24 C -0.193 4.193 25 C -0.214 4.214 26 C -0.194 4.194 27 S 0.460 5.540 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.116 0.884 32 H 0.103 0.897 33 H 0.213 0.787 34 H 0.038 0.962 35 H 0.046 0.954 36 H 0.223 0.777 37 H 0.065 0.935 38 H 0.202 0.798 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.827 -19.978 14.840 30.613 hybrid contribution 1.280 1.017 0.021 1.635 sum -16.547 -18.961 14.860 29.226 Atomic orbital electron populations 1.22050 0.79781 1.02751 1.03161 1.47502 1.06827 1.05860 1.73107 1.22341 0.98541 0.83673 0.98871 1.22560 0.85280 0.98292 0.91359 0.88181 1.86621 1.32283 1.59013 1.57462 1.21206 0.96370 0.92793 0.89808 1.42238 1.61792 1.32216 1.00759 1.19220 1.23715 1.02606 0.91823 0.91249 1.24770 1.01183 0.99435 0.95592 1.69688 1.49058 1.40823 0.98234 0.86176 0.80033 0.82569 0.77310 1.21693 1.21755 1.20787 1.16787 0.86579 0.81868 0.76805 1.90866 1.12460 1.86581 1.50063 1.25786 0.97527 0.99415 1.19736 1.22145 1.00861 0.85217 0.95385 1.66176 1.00519 1.35920 1.16649 1.28000 0.96118 0.99274 1.00009 1.19292 0.89510 0.92820 0.98048 1.21837 1.02879 0.99471 0.95073 1.22058 0.96080 1.00727 1.02565 1.21849 1.02735 0.98641 0.96165 1.84336 1.04103 1.01415 1.64161 0.90725 0.91309 0.89142 0.88412 0.89729 0.78703 0.96232 0.95450 0.77661 0.93505 0.79767 0.92509 0.91529 0.91375 0.91598 0.90476 0.91769 0.91359 0.91497 0.92328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.58 8.56 59.85 0.51 1.09 16 2 N -0.60 -7.41 2.84 -183.12 -0.52 -7.93 16 3 C 0.09 1.14 5.13 -4.04 -0.02 1.12 16 4 C 0.09 1.43 3.30 -26.73 -0.09 1.34 16 5 H 0.10 1.98 8.14 -51.93 -0.42 1.56 16 6 O -0.55 -8.96 12.64 -35.23 -0.45 -9.40 16 7 C 0.13 2.55 5.92 -4.04 -0.02 2.53 16 8 N -0.73 -19.05 5.49 -59.91 -0.33 -19.38 16 9 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 10 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 11 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 12 N -0.93 -29.05 13.06 55.49 0.72 -28.33 16 13 Si 0.91 22.85 29.55 -169.99 -5.02 17.83 16 14 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 15 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 17 C 0.59 8.64 7.64 -12.85 -0.10 8.54 16 18 O -0.52 -9.39 16.44 5.21 0.09 -9.31 16 19 C -0.30 -3.72 6.22 -37.10 -0.23 -3.95 16 20 C 0.12 1.49 11.10 -18.85 -0.21 1.28 16 21 N -0.48 -5.54 10.49 -11.50 -0.12 -5.66 16 22 C 0.04 0.38 5.78 -13.29 -0.08 0.30 16 23 C 0.01 0.05 0.99 -155.66 -0.15 -0.11 16 24 C -0.13 -0.81 8.45 37.16 0.31 -0.49 16 25 C -0.16 -0.77 7.53 37.16 0.28 -0.49 16 26 C -0.14 -0.90 8.45 37.16 0.31 -0.59 16 27 S 0.20 1.77 16.50 -107.50 -1.77 -0.01 16 28 H 0.07 0.68 7.76 -51.93 -0.40 0.27 16 29 H 0.07 0.52 4.74 -24.82 -0.12 0.40 16 30 H 0.09 0.57 7.84 -51.93 -0.41 0.17 16 31 H 0.10 1.36 7.38 -51.93 -0.38 0.98 16 32 H 0.08 0.83 7.86 -51.93 -0.41 0.43 16 33 H 0.37 4.63 9.05 45.56 0.41 5.04 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.39 11.04 7.54 -40.82 -0.31 10.73 16 37 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 38 H 0.19 2.15 8.06 -52.48 -0.42 1.73 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.34 7.92 -51.93 -0.41 -0.08 16 43 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.06 0.28 7.92 -51.93 -0.41 -0.13 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 396.52 15.07 5.98 5.98 Total: -1.00 -35.96 396.52 -7.79 -43.74 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -6.63 Total: 9.49 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 0.27 Total: 2.97 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: -0.24 Total: -61.29 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.36 Total: -18.71 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -1.77 Total: -0.01 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.96 -7.79 -43.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700982502.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.089 kcal (2) G-P(sol) polarization free energy of solvation -35.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds