Wall clock time and date at job start Sat Apr 11 2020 06:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 113.99841 * 2 1 4 4 C 1.52997 * 109.47198 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47486 * 63.01580 * 4 3 2 6 6 C 1.36933 * 119.99708 * 265.52582 * 5 4 3 7 7 H 1.08008 * 120.00151 * 142.20220 * 6 5 4 8 8 C 1.38813 * 120.00133 * 322.19627 * 6 5 4 9 9 N 1.31619 * 119.99775 * 159.89810 * 8 6 5 10 10 Si 1.86790 * 120.00122 * 339.90199 * 8 6 5 11 11 H 1.48501 * 109.47440 * 95.59266 * 10 8 6 12 12 H 1.48503 * 109.47315 * 215.59374 * 10 8 6 13 13 H 1.48506 * 109.47153 * 335.59283 * 10 8 6 14 14 C 1.46500 * 119.99851 * 85.51768 * 5 4 3 15 15 C 1.53003 * 109.47258 * 270.00251 * 14 5 4 16 16 N 1.46497 * 109.46902 * 180.02562 * 15 14 5 17 17 C 1.34771 * 120.00031 * 180.02562 * 16 15 14 18 18 O 1.21642 * 119.99896 * 359.97438 * 17 16 15 19 19 C 1.47267 * 120.00520 * 180.02562 * 17 16 15 20 20 N 1.33563 * 123.13563 * 4.21501 * 19 17 16 21 21 C 1.28651 * 115.76154 * 180.02562 * 20 19 17 22 22 S 1.70771 * 110.56114 * 359.73049 * 21 20 19 23 23 C 1.35200 * 123.14372 * 184.23715 * 19 17 16 24 24 C 1.50702 * 125.59031 * 359.97438 * 23 19 17 25 25 C 1.53001 * 109.47449 * 233.09325 * 24 23 19 26 26 C 1.52997 * 109.46681 * 113.09100 * 24 23 19 27 27 H 1.09003 * 109.47161 * 60.00506 * 1 2 3 28 28 H 1.09001 * 109.47132 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47427 * 300.00777 * 1 2 3 30 30 H 1.08993 * 109.47674 * 59.99018 * 3 2 1 31 31 H 1.09004 * 109.46703 * 299.99123 * 3 2 1 32 32 H 1.09000 * 109.47062 * 303.01528 * 4 3 2 33 33 H 1.08995 * 109.47496 * 183.01651 * 4 3 2 34 34 H 0.97002 * 120.00278 * 180.02562 * 9 8 6 35 35 H 1.09008 * 109.46584 * 150.00477 * 14 5 4 36 36 H 1.09000 * 109.47116 * 30.00552 * 14 5 4 37 37 H 1.09002 * 109.46725 * 60.00504 * 15 14 5 38 38 H 1.09000 * 109.47303 * 300.00187 * 15 14 5 39 39 H 0.97006 * 120.00090 * 0.02562 * 16 15 14 40 40 H 1.08000 * 124.71527 * 180.02562 * 21 20 19 41 41 H 1.09005 * 109.46780 * 353.09526 * 24 23 19 42 42 H 1.08994 * 109.46648 * 300.00044 * 25 24 23 43 43 H 1.08998 * 109.46814 * 180.02562 * 25 24 23 44 44 H 1.09006 * 109.46834 * 59.99690 * 25 24 23 45 45 H 1.09009 * 109.46805 * 180.02562 * 26 24 23 46 46 H 1.08996 * 109.47534 * 299.99854 * 26 24 23 47 47 H 1.08996 * 109.47303 * 60.00765 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9733 0.5212 -1.2299 6 6 4.1827 -0.8320 -1.2408 7 1 3.9081 -1.4140 -2.1083 8 6 4.7479 -1.4558 -0.1371 9 7 4.5960 -2.7518 0.0359 10 14 5.7238 -0.4562 1.1028 11 1 4.8409 -0.0706 2.2328 12 1 6.8555 -1.2704 1.6144 13 1 6.2512 0.7674 0.4469 14 6 4.1871 1.3054 -2.4487 15 6 2.8850 1.3684 -3.2497 16 7 3.0990 2.1521 -4.4688 17 6 2.0835 2.3432 -5.3339 18 8 0.9893 1.8646 -5.1028 19 6 2.2987 3.1306 -6.5597 20 7 3.4914 3.6141 -6.9169 21 6 3.5174 4.2829 -8.0156 22 16 1.9612 4.3467 -8.7158 23 6 1.3074 3.4318 -7.4284 24 6 -0.1362 3.0225 -7.2880 25 6 -0.5939 2.3199 -8.5677 26 6 -0.9977 4.2646 -7.0520 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.6885 1.8465 0.8898 31 1 1.6886 1.8463 -0.8901 32 1 3.8530 0.5980 0.8626 33 1 3.9786 2.1790 0.0547 34 1 4.9907 -3.1877 0.8073 35 1 4.9627 0.8341 -3.0526 36 1 4.4983 2.3152 -2.1812 37 1 2.1095 1.8397 -2.6458 38 1 2.5738 0.3586 -3.5173 39 1 3.9717 2.5334 -4.6533 40 1 4.4015 4.7364 -8.4388 41 1 -0.2403 2.3421 -6.4427 42 1 -0.4897 3.0002 -9.4128 43 1 -1.6381 2.0243 -8.4662 44 1 0.0200 1.4349 -8.7358 45 1 -2.0418 3.9686 -6.9500 46 1 -0.6717 4.7652 -6.1403 47 1 -0.8936 4.9450 -7.8972 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701002515.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:20 Heat of formation + Delta-G solvation = -11.633414 kcal Electronic energy + Delta-G solvation = -28039.390110 eV Core-core repulsion = 24157.417254 eV Total energy + Delta-G solvation = -3881.972856 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.67738 -38.57392 -37.46799 -36.18594 -35.70963 -34.16206 -31.60635 -30.29221 -29.54679 -27.92078 -27.41255 -25.84353 -25.64983 -23.88784 -22.71034 -21.80823 -21.51313 -20.67386 -19.58779 -18.17534 -16.89834 -16.74785 -16.09300 -15.83455 -15.55023 -15.39181 -15.17348 -14.66989 -14.51123 -14.37340 -14.14239 -14.03746 -13.67821 -13.52615 -13.31085 -13.16402 -12.54694 -12.49547 -12.40446 -12.27033 -11.86105 -11.73173 -11.69460 -11.48518 -11.33806 -11.12317 -10.97934 -10.69101 -10.60327 -10.22295 -10.06328 -9.72850 -9.68821 -9.58737 -9.52092 -9.21024 -8.90983 -8.60870 -8.44434 -6.84506 -5.86416 -3.31355 0.32813 0.98667 1.40373 1.88412 3.36210 3.38507 3.41597 3.50777 3.54074 3.96180 4.42822 4.57608 4.61636 4.64314 4.82738 4.90602 5.01928 5.16770 5.30034 5.33874 5.48118 5.55236 5.62724 5.64061 5.67859 5.74328 5.77253 5.84224 5.86562 5.95025 5.98844 6.00900 6.13396 6.17495 6.19999 6.23164 6.32439 6.58154 6.65514 6.74046 6.86115 7.16966 7.75241 7.96926 8.15386 8.35421 8.48465 9.02580 9.80106 10.14289 11.29280 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016244 B = 0.002760 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.277735 B =10143.655536 C =11068.332357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.348 6.348 3 C 0.042 3.958 4 C 0.131 3.869 5 N -0.590 5.590 6 C -0.256 4.256 7 H 0.077 0.923 8 C 0.042 3.958 9 N -0.899 5.899 10 Si 0.878 3.122 11 H -0.287 1.287 12 H -0.303 1.303 13 H -0.271 1.271 14 C 0.140 3.860 15 C 0.095 3.905 16 N -0.704 5.704 17 C 0.590 3.410 18 O -0.534 6.534 19 C -0.003 4.003 20 N -0.436 5.436 21 C -0.008 4.008 22 S 0.191 5.809 23 C -0.168 4.168 24 C -0.053 4.053 25 C -0.144 4.144 26 C -0.140 4.140 27 H 0.031 0.969 28 H 0.079 0.921 29 H 0.026 0.974 30 H 0.028 0.972 31 H 0.040 0.960 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.261 0.739 35 H 0.064 0.936 36 H 0.042 0.958 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.406 0.594 40 H 0.204 0.796 41 H 0.137 0.863 42 H 0.052 0.948 43 H 0.067 0.933 44 H 0.059 0.941 45 H 0.066 0.934 46 H 0.057 0.943 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.497 17.912 -16.975 25.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.266 6.266 3 C -0.037 4.037 4 C 0.005 3.995 5 N -0.312 5.312 6 C -0.385 4.385 7 H 0.095 0.905 8 C -0.158 4.158 9 N -0.540 5.540 10 Si 0.709 3.291 11 H -0.215 1.215 12 H -0.231 1.231 13 H -0.195 1.195 14 C 0.013 3.987 15 C -0.031 4.031 16 N -0.354 5.354 17 C 0.373 3.627 18 O -0.412 6.412 19 C -0.137 4.137 20 N -0.150 5.150 21 C -0.307 4.307 22 S 0.447 5.553 23 C -0.292 4.292 24 C -0.073 4.073 25 C -0.202 4.202 26 C -0.198 4.198 27 H 0.050 0.950 28 H 0.097 0.903 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.058 0.942 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.241 0.759 40 H 0.220 0.780 41 H 0.155 0.845 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.085 0.915 46 H 0.076 0.924 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.897 17.582 -17.244 25.862 hybrid contribution 0.691 0.483 1.441 1.669 sum -7.207 18.065 -15.803 25.060 Atomic orbital electron populations 1.22656 0.83637 1.01930 0.98415 1.88270 1.17046 1.26446 1.94826 1.23368 0.97372 0.85194 0.97795 1.21401 0.90363 0.96288 0.91423 1.43878 1.76770 1.05439 1.05077 1.18615 1.35394 0.80439 1.04006 0.90517 1.25348 0.97792 0.94919 0.97783 1.69856 1.45212 1.09574 1.29357 0.86919 0.80183 0.80440 0.81567 1.21521 1.23128 1.19544 1.20997 0.93544 0.95094 0.89074 1.22509 1.01298 0.95595 0.83653 1.45933 1.13402 1.53446 1.22580 1.17032 0.84640 0.79555 0.81490 1.90664 1.24273 1.50859 1.75398 1.20464 0.87907 1.05532 0.99797 1.66957 1.24441 1.09406 1.14196 1.28309 1.02447 1.03862 0.96125 1.82769 1.02777 1.46847 1.22891 1.25680 1.02272 1.02924 0.98292 1.20322 0.85385 0.99289 1.02331 1.21912 1.01974 1.00470 0.95815 1.21854 0.99744 0.96521 1.01670 0.95032 0.90290 0.95566 0.95352 0.94236 0.91519 0.92825 0.92907 0.91735 0.94007 0.91947 0.90851 0.75943 0.77987 0.84535 0.92896 0.91430 0.92206 0.91505 0.92376 0.92927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 101.05 1.11 1.66 16 2 O -0.35 -7.90 10.31 -35.23 -0.36 -8.27 16 3 C 0.04 0.83 6.21 37.16 0.23 1.06 16 4 C 0.13 2.84 4.77 -4.04 -0.02 2.82 16 5 N -0.59 -13.78 2.03 -173.23 -0.35 -14.13 16 6 C -0.26 -7.17 9.61 -15.06 -0.14 -7.31 16 7 H 0.08 2.36 8.06 -52.48 -0.42 1.93 16 8 C 0.04 1.22 5.32 -17.43 -0.09 1.12 16 9 N -0.90 -27.94 13.97 55.49 0.78 -27.16 16 10 Si 0.88 22.32 24.88 -169.99 -4.23 18.09 16 11 H -0.29 -7.17 6.71 56.52 0.38 -6.79 16 12 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 13 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 14 C 0.14 2.68 5.83 -4.04 -0.02 2.65 16 15 C 0.09 1.74 5.90 -4.04 -0.02 1.71 16 16 N -0.70 -11.13 5.55 -61.43 -0.34 -11.47 16 17 C 0.59 9.65 7.79 -12.59 -0.10 9.55 16 18 O -0.53 -9.95 13.86 5.24 0.07 -9.88 16 19 C 0.00 -0.04 6.70 -84.53 -0.57 -0.60 16 20 N -0.44 -5.29 10.13 -12.36 -0.13 -5.42 16 21 C -0.01 -0.07 12.17 51.43 0.63 0.56 16 22 S 0.19 1.48 22.38 -107.50 -2.41 -0.93 16 23 C -0.17 -1.91 5.05 -35.39 -0.18 -2.09 16 24 C -0.05 -0.58 3.11 -91.77 -0.29 -0.86 16 25 C -0.14 -1.27 9.02 37.16 0.34 -0.94 16 26 C -0.14 -1.26 9.17 37.16 0.34 -0.92 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.04 0.74 5.90 -51.93 -0.31 0.43 16 32 H 0.07 1.61 3.36 -51.93 -0.17 1.44 16 33 H 0.05 1.00 7.96 -51.93 -0.41 0.58 16 34 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 35 H 0.06 1.24 8.04 -51.92 -0.42 0.82 16 36 H 0.04 0.70 7.94 -51.93 -0.41 0.29 16 37 H 0.06 1.19 5.92 -51.93 -0.31 0.88 16 38 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 39 H 0.41 5.68 8.00 -40.82 -0.33 5.35 16 40 H 0.20 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.14 1.91 4.96 -51.93 -0.26 1.66 16 42 H 0.05 0.39 7.79 -51.93 -0.40 -0.02 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 391.40 15.07 5.90 5.90 Total: -1.00 -34.19 391.40 -7.11 -41.30 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -7.25 Total: 3.56 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: 1.21 Total: 8.42 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: -0.04 Total: -58.19 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.29 Total: -18.15 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.23 Total: 18.09 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.41 Total: -0.93 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.19 -7.11 -41.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701002515.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.665 kcal (2) G-P(sol) polarization free energy of solvation -34.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds