Wall clock time and date at job start Sat Apr 11 2020 06:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46833 * 2 1 4 4 H 1.09001 * 109.47276 * 305.28523 * 3 2 1 5 5 C 1.53001 * 109.47097 * 185.28512 * 3 2 1 6 6 N 1.46499 * 109.47050 * 185.00523 * 5 3 2 7 7 C 1.34774 * 120.00151 * 180.02562 * 6 5 3 8 8 O 1.21289 * 119.99995 * 359.97438 * 7 6 5 9 9 C 1.50695 * 120.00356 * 179.97438 * 7 6 5 10 10 S 1.81008 * 109.47372 * 179.97438 * 9 7 6 11 11 C 1.76206 * 99.99819 * 179.97438 * 10 9 7 12 12 H 1.07993 * 119.99981 * 0.02562 * 11 10 9 13 13 C 1.38801 * 119.99427 * 179.97438 * 11 10 9 14 14 N 1.31633 * 119.99530 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 120.00088 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47169 * 90.00032 * 15 13 11 17 17 H 1.48511 * 109.46910 * 209.99869 * 15 13 11 18 18 H 1.48495 * 109.47088 * 329.99389 * 15 13 11 19 19 N 1.46896 * 109.47160 * 65.28248 * 3 2 1 20 20 C 1.46908 * 110.99860 * 58.90624 * 19 3 2 21 21 C 1.50703 * 109.46900 * 174.46449 * 20 19 3 22 22 N 1.34476 * 126.16224 * 269.68397 * 21 20 19 23 23 C 1.30258 * 108.69814 * 179.82672 * 22 21 20 24 24 C 1.50701 * 125.61886 * 180.19332 * 23 22 21 25 25 O 1.33961 * 108.76165 * 0.44323 * 23 22 21 26 26 C 1.34328 * 126.16453 * 90.00226 * 21 20 19 27 27 C 1.50694 * 126.44876 * 0.02562 * 26 21 20 28 28 H 1.09004 * 109.46783 * 174.69617 * 1 2 3 29 29 H 1.09004 * 109.46931 * 294.69175 * 1 2 3 30 30 H 1.08996 * 109.47355 * 54.69417 * 1 2 3 31 31 H 1.08999 * 109.46857 * 240.00672 * 2 1 3 32 32 H 1.08991 * 109.47826 * 120.00031 * 2 1 3 33 33 H 1.09003 * 109.46738 * 304.99683 * 5 3 2 34 34 H 1.08998 * 109.47399 * 64.99503 * 5 3 2 35 35 H 0.96996 * 120.00207 * 359.97438 * 6 5 3 36 36 H 1.09004 * 109.47049 * 299.99916 * 9 7 6 37 37 H 1.09003 * 109.47221 * 59.99764 * 9 7 6 38 38 H 0.96996 * 119.99857 * 179.97438 * 14 13 11 39 39 H 1.00900 * 111.00196 * 294.95379 * 19 3 2 40 40 H 1.09001 * 109.47081 * 54.46073 * 20 19 3 41 41 H 1.09003 * 109.46858 * 294.46178 * 20 19 3 42 42 H 1.08993 * 109.47287 * 180.32296 * 24 23 22 43 43 H 1.09004 * 109.46938 * 300.31401 * 24 23 22 44 44 H 1.09000 * 109.47545 * 60.31501 * 24 23 22 45 45 H 1.09000 * 109.46995 * 89.99719 * 27 26 21 46 46 H 1.08997 * 109.47577 * 210.00616 * 27 26 21 47 47 H 1.09003 * 109.47116 * 330.00128 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6014 1.9830 -0.8389 5 6 3.5642 1.4447 -0.1329 6 7 4.0629 2.8170 -0.0130 7 6 5.3850 3.0635 -0.0997 8 8 6.1621 2.1491 -0.2764 9 6 5.8980 4.4751 0.0230 10 16 7.7013 4.4776 -0.1341 11 6 8.0213 6.2014 0.0417 12 1 7.2032 6.8896 0.1948 13 6 9.3249 6.6746 -0.0156 14 7 9.5639 7.9624 0.1152 15 14 10.7398 5.4840 -0.2797 16 1 10.9943 5.3327 -1.7349 17 1 11.9598 6.0100 0.3841 18 1 10.3904 4.1631 0.3018 19 7 1.6571 2.0973 1.2581 20 6 2.2102 1.3796 2.4145 21 6 1.9131 2.1520 3.6740 22 7 2.6941 3.0954 4.2291 23 6 2.1099 3.5416 5.3044 24 6 2.6515 4.6105 6.2183 25 8 0.9509 2.8898 5.4670 26 6 0.8232 2.0178 4.4476 27 6 -0.3259 1.0700 4.2190 28 1 -0.3633 -1.0233 -0.0950 29 1 -0.3633 0.4293 0.9337 30 1 -0.3634 0.5939 -0.8386 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 3.9984 0.8302 0.6558 34 1 3.8447 1.0396 -1.1051 35 1 3.4415 3.5483 0.1279 36 1 5.4634 5.0894 -0.7656 37 1 5.6178 4.8803 0.9953 38 1 10.4749 8.2930 0.0756 39 1 0.6544 2.1822 1.3310 40 1 3.2890 1.2775 2.2968 41 1 1.7565 0.3906 2.4792 42 1 1.9532 4.7749 7.0389 43 1 3.6142 4.2925 6.6188 44 1 2.7790 5.5370 5.6584 45 1 -0.1207 0.1232 4.7185 46 1 -1.2405 1.5036 4.6233 47 1 -0.4475 0.8977 3.1496 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714060639.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:30 Heat of formation + Delta-G solvation = -25.243581 kcal Electronic energy + Delta-G solvation = -27392.370966 eV Core-core repulsion = 23509.807929 eV Total energy + Delta-G solvation = -3882.563037 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.53432 -39.51774 -38.17717 -35.24642 -34.07096 -33.59878 -32.35611 -31.91610 -30.41004 -30.01368 -28.12629 -26.78875 -25.52291 -24.68405 -23.47683 -22.00495 -21.10976 -20.23276 -19.91252 -17.75438 -17.47033 -17.07598 -16.29528 -16.16061 -15.93274 -15.60437 -14.97444 -14.88471 -14.58561 -14.44831 -14.30193 -13.88716 -13.77373 -13.67353 -13.37094 -13.22984 -13.06028 -13.02344 -12.84408 -12.71946 -12.67013 -12.32313 -12.14538 -11.83853 -11.60650 -11.40560 -11.28987 -11.17905 -10.95717 -10.93645 -10.53327 -10.49241 -9.77981 -9.35962 -8.93006 -8.89607 -8.71299 -8.67706 -8.38939 -6.80829 -6.21116 -3.91131 1.19395 2.41325 2.45753 2.90232 3.17616 3.38449 3.43191 3.57516 3.70297 3.80616 4.02696 4.38834 4.40322 4.40913 4.47602 4.57262 4.65253 4.73683 4.88224 4.90651 4.94026 5.05300 5.08508 5.11130 5.18028 5.19551 5.20071 5.28181 5.34628 5.47114 5.49108 5.53552 5.54987 5.72592 5.73808 5.83346 5.85042 5.88560 5.95338 6.12118 6.19662 6.56086 6.78800 6.98390 7.63093 7.89085 8.02499 8.50605 8.70663 9.25520 10.88340 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011004 B = 0.002832 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.849970 B = 9885.757722 C =11939.850381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.161 4.161 3 C 0.076 3.924 4 H 0.094 0.906 5 C 0.129 3.871 6 N -0.721 5.721 7 C 0.531 3.469 8 O -0.529 6.529 9 C -0.121 4.121 10 S -0.145 6.145 11 C -0.517 4.517 12 H 0.088 0.912 13 C 0.094 3.906 14 N -0.883 5.883 15 Si 0.857 3.143 16 H -0.268 1.268 17 H -0.275 1.275 18 H -0.235 1.235 19 N -0.671 5.671 20 C 0.133 3.867 21 C 0.003 3.997 22 N -0.459 5.459 23 C 0.188 3.812 24 C -0.057 4.057 25 O -0.205 6.205 26 C -0.056 4.056 27 C -0.065 4.065 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.407 0.593 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.270 0.730 39 H 0.341 0.659 40 H 0.097 0.903 41 H 0.051 0.949 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.904 -15.229 7.920 31.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.201 4.201 3 C -0.034 4.034 4 H 0.112 0.888 5 C 0.004 3.996 6 N -0.375 5.375 7 C 0.317 3.683 8 O -0.405 6.405 9 C -0.271 4.271 10 S 0.082 5.918 11 C -0.665 4.665 12 H 0.106 0.894 13 C -0.114 4.114 14 N -0.520 5.520 15 Si 0.682 3.318 16 H -0.193 1.193 17 H -0.201 1.201 18 H -0.159 1.159 19 N -0.303 5.303 20 C 0.004 3.996 21 C -0.118 4.118 22 N -0.189 5.189 23 C -0.019 4.019 24 C -0.114 4.114 25 O -0.093 6.093 26 C -0.110 4.110 27 C -0.122 4.122 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.242 0.758 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.080 0.920 39 H 0.161 0.839 40 H 0.115 0.885 41 H 0.069 0.931 42 H 0.104 0.896 43 H 0.116 0.884 44 H 0.118 0.882 45 H 0.100 0.900 46 H 0.097 0.903 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -23.401 -15.915 7.428 29.259 hybrid contribution -1.698 0.208 0.486 1.779 sum -25.100 -15.707 7.914 30.649 Atomic orbital electron populations 1.21775 0.95346 1.02144 1.01680 1.22219 0.96502 0.97916 1.03455 1.21941 0.95367 0.93320 0.92741 0.88758 1.21289 0.91624 0.84875 1.01816 1.45730 1.07451 1.09095 1.75268 1.20233 0.81752 0.90852 0.75510 1.90681 1.55725 1.46200 1.47848 1.23245 1.02421 0.95740 1.05720 1.84727 0.98614 1.12818 1.95661 1.22341 0.97232 0.89976 1.56961 0.89429 1.24714 0.98239 0.95022 0.93407 1.69946 1.21321 1.12531 1.48182 0.86730 0.82070 0.83225 0.79808 1.19280 1.20051 1.15889 1.60455 1.16761 1.52527 1.00562 1.20227 1.02330 0.92326 0.84681 1.21277 0.92190 0.99065 0.99242 1.70412 1.30523 1.10765 1.07156 1.26323 0.81921 0.97609 0.96036 1.20271 1.01507 0.93307 0.96332 1.84370 1.38916 1.42108 1.43862 1.23103 1.00722 0.97237 0.89913 1.20231 0.93232 0.95683 1.03052 0.92305 0.93126 0.92221 0.90677 0.91239 0.91878 0.91270 0.75819 0.88766 0.88422 0.92049 0.83948 0.88491 0.93139 0.89636 0.88351 0.88209 0.89955 0.90268 0.89584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.56 37.16 0.36 -0.32 16 2 C -0.16 -0.94 5.17 -26.73 -0.14 -1.08 16 3 C 0.08 0.58 2.70 -67.71 -0.18 0.40 16 4 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 5 C 0.13 1.47 4.70 -4.04 -0.02 1.46 16 6 N -0.72 -10.19 5.39 -60.29 -0.32 -10.51 16 7 C 0.53 10.17 7.85 -10.99 -0.09 10.09 16 8 O -0.53 -12.03 15.86 5.55 0.09 -11.94 16 9 C -0.12 -2.52 6.16 36.00 0.22 -2.30 16 10 S -0.14 -3.84 18.55 -107.50 -1.99 -5.83 16 11 C -0.52 -15.42 10.04 30.94 0.31 -15.11 16 12 H 0.09 2.72 8.03 -52.49 -0.42 2.30 16 13 C 0.09 2.84 5.50 -17.43 -0.10 2.74 16 14 N -0.88 -27.28 13.97 55.49 0.78 -26.51 16 15 Si 0.86 22.41 27.74 -169.99 -4.71 17.70 16 16 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.23 -6.16 6.74 56.52 0.38 -5.78 16 19 N -0.67 -5.53 5.79 -107.98 -0.63 -6.16 16 20 C 0.13 1.27 5.02 -4.97 -0.02 1.25 16 21 C 0.00 0.03 6.67 -82.81 -0.55 -0.52 16 22 N -0.46 -6.43 11.29 -7.36 -0.08 -6.51 16 23 C 0.19 2.18 8.34 -12.95 -0.11 2.07 16 24 C -0.06 -0.44 10.51 36.01 0.38 -0.06 16 25 O -0.20 -2.28 10.78 5.36 0.06 -2.22 16 26 C -0.06 -0.55 7.39 -35.69 -0.26 -0.81 16 27 C -0.07 -0.34 10.04 36.00 0.36 0.02 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.05 0.19 6.66 -51.93 -0.35 -0.16 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.43 6.23 -51.93 -0.32 0.10 16 33 H 0.06 0.80 6.58 -51.93 -0.34 0.46 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.41 5.16 8.14 -40.82 -0.33 4.83 16 36 H 0.09 1.84 8.14 -51.91 -0.42 1.41 16 37 H 0.10 1.98 8.14 -51.91 -0.42 1.56 16 38 H 0.27 7.73 8.31 -40.82 -0.34 7.39 16 39 H 0.34 2.29 7.53 -39.29 -0.30 2.00 16 40 H 0.10 1.19 6.16 -51.93 -0.32 0.87 16 41 H 0.05 0.37 6.13 -51.93 -0.32 0.05 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 47 H 0.09 0.31 7.29 -51.93 -0.38 -0.06 16 LS Contribution 398.71 15.07 6.01 6.01 Total: -1.00 -37.42 398.71 -7.96 -45.38 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -7.31 Total: 2.77 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: 0.16 Total: -2.17 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: -0.26 Total: -49.69 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: 0.15 Total: -14.16 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.71 Total: 17.70 kcal Atomic # 16 Polarization: -3.84 SS G_CDS: -1.99 Total: -5.83 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.42 -7.96 -45.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714060639.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.138 kcal (2) G-P(sol) polarization free energy of solvation -37.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds