Wall clock time and date at job start Sat Apr 11 2020 06:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 119.99657 * 2 1 4 4 N 1.46504 * 109.46589 * 124.72512 * 3 2 1 5 5 C 1.34807 * 126.59500 * 124.71163 * 4 3 2 6 6 C 1.36600 * 106.84255 * 179.89996 * 5 4 3 7 7 C 1.47521 * 125.77410 * 180.13026 * 6 5 4 8 8 O 1.21594 * 119.99614 * 0.25075 * 7 6 5 9 9 N 1.34778 * 120.00187 * 180.24699 * 7 6 5 10 10 C 1.46494 * 119.99893 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.46831 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47139 * 294.99622 * 11 10 9 13 13 N 1.46499 * 109.47122 * 55.00035 * 11 10 9 14 14 C 1.36939 * 119.99813 * 54.93098 * 13 11 10 15 15 H 1.07995 * 120.00217 * 5.46645 * 14 13 11 16 16 C 1.38815 * 119.99883 * 185.45785 * 14 13 11 17 17 N 1.31624 * 119.99783 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00066 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47175 * 90.00679 * 18 16 14 20 20 H 1.48501 * 109.47345 * 210.00684 * 18 16 14 21 21 H 1.48500 * 109.47130 * 330.00414 * 18 16 14 22 22 C 1.50701 * 109.47032 * 174.99674 * 11 10 9 23 23 C 1.38232 * 120.00121 * 206.65458 * 22 11 10 24 24 C 1.38241 * 119.99988 * 179.79166 * 23 22 11 25 25 C 1.38234 * 119.99764 * 0.44185 * 24 23 22 26 26 C 1.38237 * 120.00309 * 359.80645 * 25 24 23 27 27 C 1.38234 * 119.99806 * 26.93035 * 22 11 10 28 28 N 1.34407 * 108.45423 * 0.36833 * 6 5 4 29 29 N 1.28761 * 109.52146 * 359.76841 * 28 6 5 30 30 H 1.07998 * 120.00207 * 180.26896 * 1 2 3 31 31 H 1.08001 * 120.00348 * 0.27865 * 1 2 3 32 32 H 1.08001 * 119.99818 * 179.72128 * 2 1 3 33 33 H 1.08996 * 109.46815 * 244.71709 * 3 2 1 34 34 H 1.08993 * 109.47422 * 4.72456 * 3 2 1 35 35 H 1.08002 * 126.58066 * 0.03388 * 5 4 3 36 36 H 0.96999 * 119.99441 * 0.02562 * 9 7 6 37 37 H 1.09001 * 109.47254 * 299.99484 * 10 9 7 38 38 H 1.09001 * 109.47288 * 60.00304 * 10 9 7 39 39 H 0.96998 * 120.00171 * 234.93626 * 13 11 10 40 40 H 0.97001 * 119.99647 * 179.97438 * 17 16 14 41 41 H 1.07992 * 119.99885 * 359.97438 * 23 22 11 42 42 H 1.07995 * 119.99900 * 180.27009 * 24 23 22 43 43 H 1.07997 * 119.99915 * 179.83983 * 25 24 23 44 44 H 1.07996 * 119.99981 * 180.02562 * 26 25 24 45 45 H 1.08000 * 120.00585 * 359.97438 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9890 1.3346 1.1353 5 6 4.3192 1.5469 1.0824 6 6 4.7802 1.4913 2.3671 7 6 6.1825 1.6706 2.7886 8 8 7.0428 1.8941 1.9589 9 7 6.5100 1.5868 4.0933 10 6 7.9024 1.7654 4.5119 11 6 8.0002 1.6231 6.0322 12 1 7.4495 2.4339 6.5091 13 7 7.4278 0.3378 6.4401 14 6 7.8909 -0.8251 5.8846 15 1 8.7362 -0.8035 5.2129 16 6 7.2739 -2.0317 6.1852 17 7 6.2435 -2.0580 7.0037 18 14 7.9060 -3.6180 5.4280 19 1 8.9403 -4.2113 6.3132 20 1 6.7809 -4.5745 5.2712 21 1 8.4994 -3.3295 4.0977 22 6 9.4467 1.6843 6.4504 23 6 9.8572 1.0583 7.6125 24 6 11.1849 1.1107 7.9939 25 6 12.1003 1.7969 7.2180 26 6 11.6889 2.4272 6.0585 27 6 10.3619 2.3712 5.6750 28 7 3.7409 1.2405 3.1816 29 7 2.6625 1.1414 2.4851 30 1 -0.5400 -0.9353 0.0044 31 1 -0.5401 0.9353 -0.0045 32 1 1.8500 -0.9353 0.0045 33 1 2.6252 1.4004 -0.9292 34 1 1.3582 2.1319 0.0846 35 1 4.9072 1.7285 0.1949 36 1 5.8236 1.4083 4.7550 37 1 8.5251 1.0085 4.0350 38 1 8.2461 2.7570 4.2173 39 1 6.7208 0.3104 7.1036 40 1 5.8121 -2.9011 7.2134 41 1 9.1413 0.5257 8.2209 42 1 11.5064 0.6179 8.8995 43 1 13.1371 1.8400 7.5173 44 1 12.4041 2.9629 5.4522 45 1 10.0405 2.8637 4.7691 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714839131.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:18 Heat of formation + Delta-G solvation = 129.034672 kcal Electronic energy + Delta-G solvation = -28632.822646 eV Core-core repulsion = 24653.798415 eV Total energy + Delta-G solvation = -3979.024230 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.08362 -39.23467 -38.52304 -36.18527 -35.81871 -33.44622 -32.85997 -31.90208 -30.74340 -30.39657 -29.44177 -27.66916 -26.83988 -24.51217 -23.28969 -22.39215 -22.14285 -21.60068 -20.65732 -19.89275 -19.73483 -18.01928 -17.35175 -16.42602 -16.08710 -16.00413 -15.54903 -15.42429 -15.13350 -14.63863 -14.47234 -14.34305 -14.17558 -13.93124 -13.61438 -13.39657 -12.94058 -12.80001 -12.73422 -12.52703 -12.10438 -12.04416 -11.90099 -11.80476 -11.22674 -11.14516 -10.87818 -10.76652 -10.53252 -10.43006 -10.39819 -10.01316 -10.00197 -9.72270 -9.65303 -9.17921 -8.98646 -8.39390 -8.32359 -8.08585 -7.05679 -5.77815 -3.09160 1.18684 1.49400 1.92530 1.96888 2.00732 2.31919 3.44279 3.50722 3.52286 3.59585 3.74178 4.16527 4.30412 4.36983 4.39358 4.60311 4.61071 4.87732 5.00488 5.10884 5.33406 5.35812 5.39908 5.42156 5.49083 5.53887 5.65991 5.73882 5.88165 5.90697 6.01370 6.06375 6.08678 6.13902 6.23349 6.36186 6.38146 6.56023 6.66417 6.70160 6.94456 7.04887 7.12353 7.34728 7.60608 7.76443 7.95083 8.22251 8.38311 8.68866 9.51856 9.99692 10.36532 11.43545 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011731 B = 0.003044 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.175328 B = 9195.171431 C =10760.574307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.180 4.180 3 C 0.153 3.847 4 N -0.365 5.365 5 C 0.084 3.916 6 C -0.091 4.091 7 C 0.599 3.401 8 O -0.558 6.558 9 N -0.682 5.682 10 C 0.116 3.884 11 C 0.196 3.804 12 H 0.074 0.926 13 N -0.713 5.713 14 C -0.232 4.232 15 H 0.069 0.931 16 C -0.003 4.003 17 N -0.927 5.927 18 Si 0.898 3.102 19 H -0.290 1.290 20 H -0.293 1.293 21 H -0.282 1.282 22 C -0.078 4.078 23 C -0.076 4.076 24 C -0.130 4.130 25 C -0.135 4.135 26 C -0.131 4.131 27 C -0.127 4.127 28 N -0.194 5.194 29 N -0.062 5.062 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.118 0.882 33 H 0.112 0.888 34 H 0.100 0.900 35 H 0.202 0.798 36 H 0.413 0.587 37 H 0.072 0.928 38 H 0.058 0.942 39 H 0.388 0.612 40 H 0.255 0.745 41 H 0.130 0.870 42 H 0.112 0.888 43 H 0.110 0.890 44 H 0.111 0.889 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.775 10.395 -11.291 16.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.199 4.199 3 C 0.033 3.967 4 N -0.150 5.150 5 C -0.072 4.072 6 C -0.230 4.230 7 C 0.382 3.618 8 O -0.436 6.436 9 N -0.330 5.330 10 C -0.010 4.010 11 C 0.084 3.916 12 H 0.092 0.908 13 N -0.352 5.352 14 C -0.363 4.363 15 H 0.087 0.913 16 C -0.199 4.199 17 N -0.574 5.574 18 Si 0.729 3.271 19 H -0.217 1.217 20 H -0.219 1.219 21 H -0.208 1.208 22 C -0.081 4.081 23 C -0.094 4.094 24 C -0.148 4.148 25 C -0.153 4.153 26 C -0.150 4.150 27 C -0.145 4.145 28 N -0.068 5.068 29 N -0.043 5.043 30 H 0.126 0.874 31 H 0.120 0.880 32 H 0.136 0.864 33 H 0.130 0.870 34 H 0.118 0.882 35 H 0.219 0.781 36 H 0.250 0.750 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.222 0.778 40 H 0.065 0.935 41 H 0.148 0.852 42 H 0.131 0.869 43 H 0.128 0.872 44 H 0.129 0.871 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.260 10.116 -10.970 15.823 hybrid contribution 0.585 -1.192 -0.797 1.548 sum -4.675 8.925 -11.767 15.491 Atomic orbital electron populations 1.23971 0.95455 1.02745 0.96656 1.22908 0.96416 0.97548 1.03027 1.21043 0.92047 0.98037 0.85620 1.50536 1.06546 1.48826 1.09133 1.23337 0.84569 0.98632 1.00638 1.21606 0.95718 1.15342 0.90344 1.16698 0.84646 0.77289 0.83133 1.90752 1.49068 1.51630 1.52190 1.45533 1.11171 1.69223 1.07110 1.21861 0.81859 1.00148 0.97086 1.19355 0.89998 0.90437 0.91764 0.90792 1.42385 1.44061 0.99723 1.49076 1.19024 1.10512 0.84666 1.22136 0.91310 1.24667 0.97770 0.97556 0.99957 1.69645 1.23495 1.25498 1.38792 0.86330 0.77623 0.84155 0.78981 1.21721 1.21908 1.20795 1.20751 0.97093 0.95737 0.94491 1.21072 0.95438 0.96576 0.96330 1.21118 0.93891 0.99940 0.99890 1.20982 0.98846 0.99545 0.95976 1.20974 0.95911 1.00925 0.97151 1.21134 0.93270 1.00375 0.99748 1.74741 0.96384 1.09010 1.26683 1.82028 1.17226 1.21918 0.83080 0.87424 0.87965 0.86381 0.87023 0.88172 0.78077 0.75009 0.90985 0.92373 0.77772 0.93535 0.85195 0.86942 0.87237 0.87073 0.86378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 14.32 29.01 0.42 -0.54 16 2 C -0.18 -1.37 9.72 -36.02 -0.35 -1.72 16 3 C 0.15 1.06 6.98 -5.19 -0.04 1.02 16 4 N -0.37 -4.30 3.68 -62.24 -0.23 -4.53 16 5 C 0.08 1.07 11.27 -16.84 -0.19 0.88 16 6 C -0.09 -1.52 6.99 -83.55 -0.58 -2.10 16 7 C 0.60 11.24 7.82 -12.48 -0.10 11.14 16 8 O -0.56 -11.27 16.86 5.28 0.09 -11.19 16 9 N -0.68 -12.88 5.38 -61.35 -0.33 -13.21 16 10 C 0.12 2.14 3.87 -4.04 -0.02 2.13 16 11 C 0.20 3.62 3.26 -69.08 -0.23 3.40 16 12 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 13 N -0.71 -16.02 3.81 -54.55 -0.21 -16.22 16 14 C -0.23 -6.02 8.52 -15.06 -0.13 -6.15 16 15 H 0.07 1.85 7.19 -52.49 -0.38 1.47 16 16 C 0.00 -0.08 5.50 -17.43 -0.10 -0.18 16 17 N -0.93 -26.84 13.07 55.49 0.73 -26.11 16 18 Si 0.90 22.63 29.55 -169.99 -5.02 17.61 16 19 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 20 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 21 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 22 C -0.08 -1.40 5.19 -104.63 -0.54 -1.95 16 23 C -0.08 -1.41 9.03 -39.58 -0.36 -1.76 16 24 C -0.13 -2.13 10.05 -39.58 -0.40 -2.53 16 25 C -0.14 -2.03 10.05 -39.58 -0.40 -2.43 16 26 C -0.13 -1.97 10.05 -39.58 -0.40 -2.37 16 27 C -0.13 -2.06 9.14 -39.58 -0.36 -2.42 16 28 N -0.19 -3.48 12.04 32.85 0.40 -3.09 16 29 N -0.06 -0.99 13.63 60.35 0.82 -0.17 16 30 H 0.11 0.61 8.06 -52.49 -0.42 0.19 16 31 H 0.10 0.51 7.84 -52.49 -0.41 0.10 16 32 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.11 0.43 8.08 -51.93 -0.42 0.01 16 34 H 0.10 0.53 7.79 -51.93 -0.40 0.13 16 35 H 0.20 1.82 8.06 -52.49 -0.42 1.40 16 36 H 0.41 8.04 7.82 -40.82 -0.32 7.72 16 37 H 0.07 1.52 7.31 -51.93 -0.38 1.15 16 38 H 0.06 0.96 6.85 -51.93 -0.36 0.61 16 39 H 0.39 9.32 8.04 -40.82 -0.33 8.99 16 40 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.13 2.61 7.51 -52.49 -0.39 2.22 16 42 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 43 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 44 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 45 H 0.12 1.75 6.22 -52.49 -0.33 1.42 16 LS Contribution 390.56 15.07 5.89 5.89 Total: -1.00 -33.00 390.56 -7.45 -40.44 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: -5.81 Total: 16.17 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -3.76 Total: -5.59 kcal Atomic # 7 Polarization: -64.50 SS G_CDS: 1.18 Total: -63.33 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.19 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.00 -7.45 -40.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714839131.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.478 kcal (2) G-P(sol) polarization free energy of solvation -32.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds