Wall clock time and date at job start Sat Apr 11 2020 06:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47132 * 2 1 4 4 N 1.46496 * 109.47319 * 299.99969 * 3 2 1 5 5 C 1.36933 * 120.00355 * 179.97438 * 4 3 2 6 6 H 1.07997 * 119.99745 * 359.97438 * 5 4 3 7 7 C 1.38811 * 120.00213 * 180.02562 * 5 4 3 8 8 N 1.31620 * 120.00189 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99940 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47140 * 59.99910 * 9 7 5 11 11 H 1.48504 * 109.47048 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.47096 * 299.99308 * 9 7 5 13 13 N 1.46494 * 109.47363 * 239.99976 * 2 1 3 14 14 C 1.34779 * 120.00082 * 175.44050 * 13 2 1 15 15 O 1.21548 * 120.00144 * 355.83076 * 14 13 2 16 16 C 1.47845 * 119.99999 * 175.83347 * 14 13 2 17 17 C 1.40600 * 120.27791 * 359.94241 * 16 14 13 18 18 N 1.30816 * 121.51784 * 179.97438 * 17 16 14 19 19 C 1.33757 * 121.79998 * 0.05824 * 18 17 16 20 20 N 1.33891 * 120.61697 * 179.97438 * 19 18 17 21 21 C 1.31326 * 119.84651 * 180.02562 * 20 19 18 22 22 C 1.39757 * 120.77657 * 359.96113 * 21 20 19 23 23 N 1.31310 * 120.55836 * 0.03380 * 22 21 20 24 24 C 1.33665 * 119.70577 * 359.97438 * 23 22 21 25 25 C 1.38913 * 120.27940 * 180.02562 * 16 14 13 26 26 C 1.53002 * 109.47057 * 119.99927 * 2 1 3 27 27 C 1.53001 * 117.49743 * 121.78775 * 26 2 1 28 28 C 1.52995 * 117.49899 * 53.13018 * 26 2 1 29 29 H 1.09001 * 109.47010 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47532 * 299.99683 * 1 2 3 31 31 H 1.09003 * 109.47256 * 60.00304 * 1 2 3 32 32 H 1.09005 * 109.46764 * 59.99816 * 3 2 1 33 33 H 1.08995 * 109.47392 * 179.97438 * 3 2 1 34 34 H 0.97010 * 119.99835 * 0.02562 * 4 3 2 35 35 H 0.96999 * 120.00348 * 180.02562 * 8 7 5 36 36 H 0.96999 * 119.99971 * 355.44366 * 13 2 1 37 37 H 1.07999 * 119.23920 * 0.03213 * 17 16 14 38 38 H 1.08001 * 119.60870 * 179.97438 * 21 20 19 39 39 H 1.08001 * 119.72293 * 180.02562 * 22 21 20 40 40 H 1.08002 * 120.99084 * 0.26277 * 25 16 14 41 41 H 1.09000 * 115.54663 * 267.45534 * 26 2 1 42 42 H 1.09000 * 117.49731 * 0.02562 * 27 26 2 43 43 H 1.08997 * 117.49728 * 145.01806 * 27 26 2 44 44 H 1.09002 * 117.49801 * 214.98242 * 28 26 2 45 45 H 1.08997 * 117.49877 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5517 2.1331 -1.1961 5 6 1.8820 3.4443 -1.4126 6 1 2.5022 3.9694 -0.7013 7 6 1.4189 4.0988 -2.5457 8 7 0.6626 3.4590 -3.4124 9 14 1.8702 5.8873 -2.8413 10 1 3.3468 6.0169 -2.9304 11 1 1.2556 6.3494 -4.1117 12 1 1.3673 6.7170 -1.7172 13 7 2.0183 -0.6906 -1.1961 14 6 3.3399 -0.7340 -1.4568 15 8 4.1204 -0.1365 -0.7417 16 6 3.8404 -1.5082 -2.6126 17 6 2.9429 -2.2024 -3.4430 18 7 3.3590 -2.8945 -4.4721 19 6 4.6563 -2.9786 -4.7869 20 7 5.0561 -3.6942 -5.8456 21 6 6.3337 -3.7669 -6.1406 22 6 7.2863 -3.1041 -5.3618 23 7 6.9200 -2.3958 -4.3185 24 6 5.6251 -2.3078 -3.9993 25 6 5.2014 -1.5573 -2.8864 26 6 2.0399 -0.7212 1.2493 27 6 2.9494 -1.9342 1.0429 28 6 1.5077 -2.1302 1.5183 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6765 1.9563 0.8900 33 1 3.1299 1.4426 0.0005 34 1 0.9936 1.6618 -1.8345 35 1 0.3393 3.9163 -4.2044 36 1 1.3905 -1.1166 -1.8005 37 1 1.8856 -2.1627 -3.2266 38 1 6.6520 -4.3456 -6.9951 39 1 8.3326 -3.1752 -5.6201 40 1 5.9133 -1.0381 -2.2619 41 1 2.2378 -0.0847 2.1117 42 1 3.1848 -2.2180 0.0172 43 1 3.7454 -2.0958 1.7698 44 1 1.3557 -2.4208 2.5578 45 1 0.7939 -2.5431 0.8056 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715112487.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:33 Heat of formation + Delta-G solvation = 110.294245 kcal Electronic energy + Delta-G solvation = -29834.517371 eV Core-core repulsion = 25854.680495 eV Total energy + Delta-G solvation = -3979.836876 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.93971 -40.53630 -38.56863 -37.13198 -35.26318 -34.99385 -33.53087 -32.23544 -31.87399 -30.86145 -29.53505 -26.40684 -25.95343 -25.34692 -23.76039 -23.06060 -22.22832 -21.99122 -21.33044 -19.63647 -19.09920 -18.61531 -17.90349 -17.30159 -16.69501 -16.04389 -15.74692 -15.50158 -15.30338 -15.02160 -14.52451 -14.39193 -14.08689 -13.83380 -13.50491 -13.34505 -13.02733 -12.97065 -12.86422 -12.24541 -12.11225 -12.09385 -12.01965 -11.90215 -11.37420 -11.13529 -11.01500 -10.86564 -10.81448 -10.74195 -10.26500 -10.10544 -9.96048 -9.67484 -9.56233 -9.50416 -9.41723 -9.03230 -8.76206 -8.69628 -6.82046 -5.72564 -2.98372 -0.33287 -0.04051 1.49665 2.16770 3.07180 3.20613 3.25512 3.47205 3.51360 3.52569 3.69911 3.75942 3.80239 3.96267 4.29006 4.37629 4.50967 4.60874 4.66019 4.71263 4.81232 4.96084 5.04221 5.09003 5.26878 5.38805 5.50773 5.54716 5.63147 5.66349 5.69976 5.72901 5.93225 6.00791 6.03883 6.11647 6.21657 6.23617 6.33029 6.54160 6.60823 6.62988 6.86554 7.12414 7.14122 7.61076 7.70635 7.75973 8.40438 8.47264 9.58565 10.16362 10.51664 11.50617 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008932 B = 0.003949 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3133.904739 B = 7088.723183 C = 9135.186991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.201 3.799 3 C 0.139 3.861 4 N -0.726 5.726 5 C -0.230 4.230 6 H 0.068 0.932 7 C -0.015 4.015 8 N -0.937 5.937 9 Si 0.904 3.096 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 N -0.707 5.707 14 C 0.572 3.428 15 O -0.507 6.507 16 C -0.169 4.169 17 C 0.195 3.805 18 N -0.456 5.456 19 C 0.271 3.729 20 N -0.418 5.418 21 C 0.110 3.890 22 C 0.070 3.930 23 N -0.404 5.404 24 C 0.020 3.980 25 C 0.038 3.962 26 C -0.143 4.143 27 C -0.165 4.165 28 C -0.182 4.182 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.022 0.978 33 H 0.057 0.943 34 H 0.381 0.619 35 H 0.254 0.746 36 H 0.395 0.605 37 H 0.175 0.825 38 H 0.184 0.816 39 H 0.183 0.817 40 H 0.167 0.833 41 H 0.111 0.889 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.400 -18.629 1.355 20.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.115 3.885 3 C 0.011 3.989 4 N -0.370 5.370 5 C -0.361 4.361 6 H 0.086 0.914 7 C -0.211 4.211 8 N -0.586 5.586 9 Si 0.736 3.264 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.213 1.213 13 N -0.359 5.359 14 C 0.357 3.643 15 O -0.382 6.382 16 C -0.177 4.177 17 C 0.018 3.982 18 N -0.165 5.165 19 C 0.031 3.969 20 N -0.133 5.133 21 C -0.070 4.070 22 C -0.107 4.107 23 N -0.118 5.118 24 C -0.106 4.106 25 C 0.010 3.990 26 C -0.163 4.163 27 C -0.203 4.203 28 C -0.219 4.219 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.040 0.960 33 H 0.075 0.925 34 H 0.215 0.785 35 H 0.063 0.937 36 H 0.230 0.770 37 H 0.192 0.808 38 H 0.201 0.799 39 H 0.199 0.801 40 H 0.184 0.816 41 H 0.129 0.871 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.295 -18.420 1.463 19.866 hybrid contribution 0.385 1.169 -0.421 1.300 sum 7.681 -17.251 1.042 18.912 Atomic orbital electron populations 1.22002 0.92827 1.01498 1.04316 1.20135 0.93909 0.92709 0.81716 1.21184 0.99280 0.87475 0.90995 1.42229 1.61210 1.10469 1.23118 1.19176 1.25044 0.87598 1.04289 0.91406 1.24663 1.00785 0.98125 0.97486 1.69625 1.39748 1.36116 1.13139 0.86300 0.77846 0.85260 0.77021 1.21434 1.21797 1.21334 1.45887 1.06453 1.56843 1.26709 1.17468 0.83042 0.80394 0.83352 1.90778 1.55798 1.42781 1.48860 1.21341 0.94639 1.02081 0.99594 1.23320 1.00454 0.87510 0.86948 1.67462 1.14327 1.18186 1.16544 1.20083 0.90353 0.94162 0.92306 1.68322 1.17520 1.14125 1.13335 1.24309 0.88194 0.95502 0.98985 1.24218 1.02330 0.93031 0.91125 1.68605 1.15651 1.13028 1.14550 1.20205 0.91197 1.00781 0.98418 1.21796 0.95341 0.90145 0.91751 1.22570 1.03953 0.90253 0.99480 1.22928 0.93041 1.02347 1.01937 1.22982 0.97318 0.99920 1.01663 0.92740 0.90785 0.90579 0.96010 0.92534 0.78493 0.93663 0.76997 0.80796 0.79933 0.80051 0.81572 0.87145 0.89294 0.89372 0.89235 0.89004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 8.17 37.15 0.30 -1.74 16 2 C 0.20 3.05 0.55 -131.82 -0.07 2.98 16 3 C 0.14 2.83 4.83 -4.04 -0.02 2.81 16 4 N -0.73 -17.93 5.18 -59.91 -0.31 -18.24 16 5 C -0.23 -6.49 9.99 -15.06 -0.15 -6.64 16 6 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 7 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 8 N -0.94 -28.09 13.06 55.49 0.72 -27.37 16 9 Si 0.90 22.89 29.55 -169.99 -5.02 17.86 16 10 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 11 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 N -0.71 -10.06 4.15 -48.54 -0.20 -10.26 16 14 C 0.57 9.08 4.78 -12.33 -0.06 9.02 16 15 O -0.51 -9.57 12.65 5.32 0.07 -9.50 16 16 C -0.17 -2.39 5.89 -104.83 -0.62 -3.01 16 17 C 0.20 2.51 10.68 -17.09 -0.18 2.33 16 18 N -0.46 -6.72 10.39 -12.27 -0.13 -6.84 16 19 C 0.27 3.94 7.60 -157.59 -1.20 2.75 16 20 N -0.42 -5.41 10.55 -12.39 -0.13 -5.54 16 21 C 0.11 0.90 11.21 -17.20 -0.19 0.71 16 22 C 0.07 0.57 11.22 -17.21 -0.19 0.38 16 23 N -0.40 -4.93 10.46 -10.77 -0.11 -5.04 16 24 C 0.02 0.28 6.59 -84.78 -0.56 -0.28 16 25 C 0.04 0.53 9.68 -38.38 -0.37 0.16 16 26 C -0.14 -1.91 4.86 -90.62 -0.44 -2.35 16 27 C -0.17 -2.09 8.53 -26.70 -0.23 -2.31 16 28 C -0.18 -1.96 9.68 -26.70 -0.26 -2.22 16 29 H 0.05 0.59 6.89 -51.93 -0.36 0.23 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.08 1.22 6.86 -51.93 -0.36 0.86 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 1.29 5.72 -51.93 -0.30 0.99 16 34 H 0.38 9.61 6.35 -40.82 -0.26 9.35 16 35 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.40 4.61 6.52 -40.82 -0.27 4.34 16 37 H 0.18 1.67 6.39 -52.49 -0.34 1.34 16 38 H 0.18 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.18 0.65 8.06 -52.49 -0.42 0.22 16 40 H 0.17 2.33 7.70 -52.49 -0.40 1.92 16 41 H 0.11 1.50 8.06 -51.93 -0.42 1.08 16 42 H 0.09 1.17 5.16 -51.93 -0.27 0.90 16 43 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.09 0.92 7.17 -51.93 -0.37 0.54 16 LS Contribution 368.74 15.07 5.56 5.56 Total: -1.00 -36.31 368.74 -9.31 -45.62 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -5.42 Total: 11.72 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -4.33 Total: 2.04 kcal Atomic # 7 Polarization: -73.14 SS G_CDS: -0.16 Total: -73.29 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.07 Total: -9.50 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.31 -9.31 -45.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715112487.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.914 kcal (2) G-P(sol) polarization free energy of solvation -36.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds