Wall clock time and date at job start Sat Apr 11 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30261 * 125.61918 * 2 1 4 4 C 1.34472 * 108.70200 * 179.97438 * 3 2 1 5 5 C 1.34323 * 107.67298 * 0.02562 * 4 3 2 6 6 C 1.50704 * 126.44842 * 180.02562 * 5 4 3 7 7 N 1.46894 * 109.47129 * 89.99592 * 6 5 4 8 8 C 1.46903 * 110.99786 * 174.57532 * 7 6 5 9 9 H 1.09001 * 109.47043 * 351.85446 * 8 7 6 10 10 C 1.52999 * 109.46886 * 231.85769 * 8 7 6 11 11 N 1.46495 * 109.47779 * 54.99754 * 10 8 7 12 12 C 1.34774 * 120.00357 * 179.97438 * 11 10 8 13 13 O 1.21282 * 120.00040 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.00056 * 180.02562 * 12 11 10 15 15 S 1.81006 * 109.47239 * 180.02562 * 14 12 11 16 16 C 1.76196 * 99.99857 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00466 * 359.97438 * 16 15 14 18 18 C 1.38807 * 119.99676 * 179.97438 * 16 15 14 19 19 N 1.31628 * 119.99621 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 119.99735 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47099 * 90.00131 * 20 18 16 22 22 H 1.48499 * 109.46866 * 209.99825 * 20 18 16 23 23 H 1.48495 * 109.47390 * 329.99979 * 20 18 16 24 24 C 1.52994 * 109.47279 * 111.85423 * 8 7 6 25 25 C 1.52998 * 109.47380 * 298.22696 * 24 8 7 26 26 C 1.53007 * 109.46969 * 58.22496 * 24 8 7 27 27 O 1.33975 * 125.62419 * 180.28625 * 2 1 3 28 28 H 1.09003 * 109.46890 * 90.02401 * 1 2 3 29 29 H 1.08997 * 109.46836 * 210.02230 * 1 2 3 30 30 H 1.09000 * 109.47408 * 330.02582 * 1 2 3 31 31 H 1.08007 * 126.16482 * 180.02562 * 4 3 2 32 32 H 1.08999 * 109.46761 * 329.99397 * 6 5 4 33 33 H 1.09005 * 109.46965 * 210.00037 * 6 5 4 34 34 H 1.00900 * 111.00171 * 298.52627 * 7 6 5 35 35 H 1.09007 * 109.46818 * 175.00278 * 10 8 7 36 36 H 1.09004 * 109.46886 * 294.99361 * 10 8 7 37 37 H 0.97005 * 119.99866 * 0.02562 * 11 10 8 38 38 H 1.09002 * 109.46503 * 299.99887 * 14 12 11 39 39 H 1.08995 * 109.47514 * 59.99645 * 14 12 11 40 40 H 0.97008 * 119.99391 * 180.02562 * 19 18 16 41 41 H 1.08997 * 109.47057 * 178.22459 * 24 8 7 42 42 H 1.09003 * 109.46975 * 62.44375 * 25 24 8 43 43 H 1.08996 * 109.47610 * 182.44811 * 25 24 8 44 44 H 1.09005 * 109.46977 * 302.45097 * 25 24 8 45 45 H 1.08998 * 109.47208 * 60.00172 * 26 24 8 46 46 H 1.09000 * 109.46522 * 180.02562 * 26 24 8 47 47 H 1.08997 * 109.47201 * 299.99875 * 26 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 0.0006 5 6 3.5699 -0.6755 0.0004 6 6 4.7938 -1.5548 0.0014 7 7 5.1902 -1.8406 1.3866 8 6 6.3025 -2.7993 1.4287 9 1 6.4841 -3.1894 0.4272 10 6 5.9461 -3.9529 2.3684 11 7 4.6759 -4.5500 1.9490 12 6 4.1613 -5.5902 2.6342 13 8 4.7497 -6.0317 3.5985 14 6 2.8549 -6.2048 2.2023 15 16 2.4332 -7.5695 3.3142 16 6 0.9090 -8.0876 2.5983 17 1 0.5201 -7.5787 1.7287 18 6 0.2079 -9.1500 3.1519 19 7 0.6821 -9.7706 4.2114 20 14 -1.4084 -9.6989 2.3933 21 1 -1.1448 -10.7339 1.3616 22 1 -2.2841 -10.2655 3.4504 23 1 -2.0813 -8.5338 1.7650 24 6 7.5624 -2.0968 1.9385 25 6 7.9440 -0.9713 0.9749 26 6 7.2935 -1.5109 3.3261 27 8 2.2873 -1.0890 -0.0054 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3634 0.8902 0.5134 31 1 4.4157 1.3164 0.0011 32 1 5.6086 -1.0439 -0.5117 33 1 4.5701 -2.4895 -0.5129 34 1 5.4261 -0.9914 1.8778 35 1 6.7320 -4.7074 2.3317 36 1 5.8517 -3.5760 3.3868 37 1 4.2054 -4.1972 1.1775 38 1 2.0689 -5.4505 2.2392 39 1 2.9495 -6.5814 1.1839 40 1 0.1923 -10.5133 4.5981 41 1 8.3796 -2.8154 1.9996 42 1 7.1450 -0.2304 0.9470 43 1 8.8657 -0.4989 1.3147 44 1 8.0931 -1.3826 -0.0234 45 1 7.0217 -2.3127 4.0126 46 1 8.1910 -1.0100 3.6890 47 1 6.4763 -0.7923 3.2650 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715490679.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:36 Heat of formation + Delta-G solvation = -51.372049 kcal Electronic energy + Delta-G solvation = -27257.177933 eV Core-core repulsion = 23373.481881 eV Total energy + Delta-G solvation = -3883.696052 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.28194 -40.75546 -39.42603 -35.73870 -35.36912 -34.99189 -34.57895 -32.65055 -31.52754 -29.76782 -28.42827 -27.88965 -27.57981 -25.45535 -23.82742 -23.13540 -22.02572 -21.71236 -20.49377 -19.73263 -18.17186 -17.85915 -17.69579 -17.28799 -16.93930 -16.87501 -16.75683 -16.00573 -15.81877 -15.63643 -15.09000 -14.91621 -14.72996 -14.49822 -14.43339 -14.23517 -13.91624 -13.77998 -13.73551 -13.46891 -13.17852 -13.15212 -13.03135 -12.88389 -12.76560 -12.69684 -12.58473 -12.28331 -11.96637 -11.72998 -11.68152 -11.63476 -11.45523 -11.13808 -10.90597 -10.27260 -9.98456 -9.73743 -9.43123 -8.65981 -8.34117 -6.12137 0.43337 1.28044 1.42756 1.47825 1.58624 1.66404 1.67599 1.75119 2.27488 2.37501 2.99807 3.09373 3.22317 3.34134 3.70283 3.77493 3.92662 3.97754 4.04482 4.09040 4.16087 4.27851 4.32829 4.40915 4.50170 4.50593 4.61822 4.64316 4.66632 4.71066 4.73086 4.78046 4.90092 5.00363 5.03497 5.05320 5.11237 5.23949 5.38923 5.40499 5.41971 5.42399 5.54487 5.90220 6.20278 6.32759 6.58966 6.75327 7.06900 7.31794 8.75219 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009089 B = 0.002907 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3080.027404 B = 9630.336117 C =12325.082265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.181 3.819 3 N -0.517 5.517 4 C -0.046 4.046 5 C -0.045 4.045 6 C 0.144 3.856 7 N -0.692 5.692 8 C 0.094 3.906 9 H 0.097 0.903 10 C 0.128 3.872 11 N -0.698 5.698 12 C 0.530 3.470 13 O -0.570 6.570 14 C -0.127 4.127 15 S -0.149 6.149 16 C -0.547 4.547 17 H 0.081 0.919 18 C 0.013 3.987 19 N -0.911 5.911 20 Si 0.999 3.001 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.258 1.258 24 C -0.108 4.108 25 C -0.147 4.147 26 C -0.153 4.153 27 O -0.210 6.210 28 H 0.109 0.891 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.204 0.796 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.354 0.646 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.411 0.589 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.271 0.729 41 H 0.085 0.915 42 H 0.058 0.942 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.046 0.954 46 H 0.066 0.934 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.745 24.594 -13.760 30.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.026 4.026 3 N -0.247 5.247 4 C -0.184 4.184 5 C -0.099 4.099 6 C 0.016 3.984 7 N -0.328 5.328 8 C -0.015 4.015 9 H 0.115 0.885 10 C 0.004 3.996 11 N -0.350 5.350 12 C 0.315 3.685 13 O -0.449 6.449 14 C -0.279 4.279 15 S 0.078 5.922 16 C -0.695 4.695 17 H 0.099 0.901 18 C -0.192 4.192 19 N -0.548 5.548 20 Si 0.821 3.179 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.182 1.182 24 C -0.128 4.128 25 C -0.204 4.204 26 C -0.211 4.211 27 O -0.097 6.097 28 H 0.127 0.873 29 H 0.114 0.886 30 H 0.127 0.873 31 H 0.220 0.780 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.177 0.823 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.247 0.753 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.080 0.920 41 H 0.104 0.896 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.065 0.935 46 H 0.085 0.915 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.986 23.857 -11.960 28.860 hybrid contribution -0.770 -0.032 -1.491 1.679 sum 10.216 23.825 -13.452 29.205 Atomic orbital electron populations 1.20480 0.79275 1.06024 1.05961 1.27072 0.97817 0.78351 0.99335 1.70452 1.03112 1.31088 1.20081 1.23473 0.95358 0.93460 1.06158 1.23701 0.83854 0.95351 1.06952 1.20533 0.88726 0.98377 0.90800 1.60362 1.40345 1.18157 1.13903 1.21753 0.89157 0.91233 0.99400 0.88524 1.21567 0.84569 0.94455 0.99006 1.45539 1.24477 1.32185 1.32811 1.20024 0.85779 0.80154 0.82506 1.90676 1.62258 1.63100 1.28890 1.23343 0.98009 1.01978 1.04534 1.85537 1.28583 1.36998 1.41083 1.23204 1.07833 1.20807 1.17641 0.90070 1.26139 1.02565 0.95252 0.95194 1.70190 1.40528 1.21891 1.22170 0.84947 0.76329 0.78756 0.77909 1.19217 1.20237 1.18185 1.21522 0.96871 0.98486 0.95923 1.21876 1.02049 0.97496 0.99011 1.21915 1.02025 1.00874 0.96238 1.84439 1.17493 1.38282 1.69528 0.87254 0.88556 0.87257 0.77959 0.88393 0.88631 0.82301 0.91989 0.92664 0.75251 0.88040 0.87515 0.91981 0.89645 0.92281 0.91595 0.91554 0.93538 0.91515 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.76 10.51 71.24 0.75 -0.01 16 2 C 0.18 3.71 8.34 88.34 0.74 4.45 16 3 N -0.52 -11.46 11.29 -303.82 -3.43 -14.89 16 4 C -0.05 -0.79 11.80 83.39 0.98 0.19 16 5 C -0.05 -0.77 6.94 24.79 0.17 -0.60 16 6 C 0.14 1.54 5.72 85.56 0.49 2.03 16 7 N -0.69 -8.86 5.40 -495.58 -2.68 -11.54 16 8 C 0.09 1.16 2.08 44.91 0.09 1.25 16 9 H 0.10 0.91 7.50 -2.39 -0.02 0.89 16 10 C 0.13 2.82 5.19 86.38 0.45 3.27 16 11 N -0.70 -18.70 5.39 -463.06 -2.49 -21.19 16 12 C 0.53 20.57 7.85 87.66 0.69 21.26 16 13 O -0.57 -27.37 15.86 -3.04 -0.05 -27.42 16 14 C -0.13 -5.32 6.16 71.24 0.44 -4.88 16 15 S -0.15 -8.51 20.57 -56.49 -1.16 -9.67 16 16 C -0.55 -31.86 9.50 67.96 0.65 -31.21 16 17 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 18 C 0.01 0.76 5.49 84.86 0.47 1.23 16 19 N -0.91 -56.67 13.22 21.65 0.29 -56.38 16 20 Si 1.00 44.03 29.55 68.60 2.03 46.06 16 21 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 22 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 24 C -0.11 -1.03 2.70 -10.79 -0.03 -1.05 16 25 C -0.15 -0.84 8.44 71.98 0.61 -0.23 16 26 C -0.15 -1.84 8.68 71.98 0.63 -1.21 16 27 O -0.21 -4.64 10.78 -3.83 -0.04 -4.69 16 28 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.20 2.19 8.06 -2.91 -0.02 2.16 16 32 H 0.10 0.50 7.29 -2.39 -0.02 0.48 16 33 H 0.10 1.00 8.04 -2.38 -0.02 0.98 16 34 H 0.35 4.18 5.36 -89.69 -0.48 3.70 16 35 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.06 1.43 6.23 -2.38 -0.01 1.41 16 37 H 0.41 9.01 8.14 -92.70 -0.75 8.25 16 38 H 0.10 3.95 8.14 -2.39 -0.02 3.93 16 39 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 40 H 0.27 15.61 8.31 -92.70 -0.77 14.84 16 41 H 0.09 0.83 8.14 -2.39 -0.02 0.82 16 42 H 0.06 0.28 6.65 -2.39 -0.02 0.26 16 43 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 44 H 0.07 0.29 8.14 -2.38 -0.02 0.27 16 45 H 0.05 0.76 6.36 -2.39 -0.02 0.75 16 46 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.06 0.68 6.30 -2.39 -0.02 0.67 16 Total: -1.00 -82.86 400.26 -0.67 -83.53 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: -0.24 Total: 21.72 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 7.11 Total: -5.53 kcal Atomic # 7 Polarization: -95.69 SS G_CDS: -8.32 Total: -104.01 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -0.09 Total: -32.11 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.16 Total: -9.67 kcal Total: -82.86 -0.67 -83.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715490679.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.160 kcal (2) G-P(sol) polarization free energy of solvation -82.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds