Wall clock time and date at job start Sat Apr 11 2020 06:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29017 * 124.92196 * 2 1 4 4 C 1.31784 * 117.12936 * 180.02562 * 3 2 1 5 5 C 1.50696 * 122.75041 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47076 * 305.02309 * 5 4 3 7 7 C 1.50702 * 109.47078 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99977 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99840 * 180.02562 * 7 6 5 10 10 C 1.46495 * 120.00209 * 359.97438 * 9 7 6 11 11 C 1.46503 * 119.99910 * 180.02562 * 9 7 6 12 12 C 1.53004 * 109.46768 * 269.99202 * 11 9 7 13 13 H 1.08992 * 109.47389 * 305.00348 * 12 11 9 14 14 O 1.42910 * 109.46778 * 64.99958 * 12 11 9 15 15 C 1.53000 * 109.46987 * 184.99850 * 12 11 9 16 16 N 1.46499 * 109.46854 * 180.02562 * 15 12 11 17 17 C 1.46503 * 119.99876 * 270.00258 * 16 15 12 18 18 C 1.36936 * 120.00341 * 90.00145 * 16 15 12 19 19 H 1.08007 * 119.99914 * 342.24986 * 18 16 15 20 20 C 1.38815 * 120.00380 * 161.97234 * 18 16 15 21 21 N 1.31615 * 119.99684 * 345.03512 * 20 18 16 22 22 Si 1.86796 * 120.00009 * 165.03248 * 20 18 16 23 23 H 1.48494 * 109.47347 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47137 * 120.00389 * 22 20 18 25 25 H 1.48510 * 109.47062 * 240.00177 * 22 20 18 26 26 C 1.33641 * 114.49794 * 0.23510 * 4 3 2 27 27 S 1.70981 * 124.91092 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.46978 * 89.99253 * 1 2 3 29 29 H 1.08998 * 109.47429 * 209.99774 * 1 2 3 30 30 H 1.09007 * 109.46793 * 329.99744 * 1 2 3 31 31 H 1.09006 * 109.47139 * 185.02311 * 5 4 3 32 32 H 1.08995 * 109.47578 * 65.02365 * 5 4 3 33 33 H 1.08999 * 109.47215 * 60.00382 * 6 5 4 34 34 H 1.09003 * 109.47292 * 300.00319 * 6 5 4 35 35 H 1.09001 * 109.47621 * 270.00766 * 10 9 7 36 36 H 1.09000 * 109.46789 * 30.00544 * 10 9 7 37 37 H 1.08997 * 109.47081 * 150.00611 * 10 9 7 38 38 H 1.09000 * 109.47207 * 149.99679 * 11 9 7 39 39 H 1.09000 * 109.47330 * 29.98893 * 11 9 7 40 40 H 0.96694 * 113.99671 * 60.00244 * 14 12 11 41 41 H 1.08995 * 109.46697 * 60.00390 * 15 12 11 42 42 H 1.08995 * 109.47257 * 299.99965 * 15 12 11 43 43 H 1.09010 * 109.46952 * 264.95187 * 17 16 15 44 44 H 1.08997 * 109.47352 * 24.95570 * 17 16 15 45 45 H 1.09005 * 109.47063 * 144.95542 * 17 16 15 46 46 H 0.96998 * 120.00043 * 179.97438 * 21 20 18 47 47 H 1.07993 * 126.03694 * 179.77453 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0579 0.0000 4 6 3.5513 0.8792 -0.0005 5 6 4.5308 2.0243 -0.0012 6 6 4.2327 2.9498 -1.1825 7 6 5.2127 4.0947 -1.1835 8 8 6.0653 4.1638 -0.3237 9 7 5.1410 5.0422 -2.1393 10 6 4.1108 4.9589 -3.1775 11 6 6.0940 6.1549 -2.1406 12 6 5.5296 7.3107 -1.3121 13 1 4.5442 7.5820 -1.6908 14 8 5.4202 6.9081 0.0547 15 6 6.4654 8.5168 -1.4152 16 7 5.9252 9.6232 -0.6215 17 6 5.0118 10.5890 -1.2374 18 6 6.2740 9.7549 0.6962 19 1 6.6997 8.9170 1.2284 20 6 6.0858 10.9668 1.3463 21 7 5.8567 12.0592 0.6487 22 14 6.1575 11.0474 3.2111 23 1 6.4261 9.6921 3.7552 24 1 7.2434 11.9718 3.6253 25 1 4.8592 11.5423 3.7356 26 6 3.9354 -0.4008 -0.0060 27 16 2.4856 -1.4021 -0.0006 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 5.5450 1.6350 -0.0915 32 1 4.4377 2.5827 0.9303 33 1 3.2187 3.3392 -1.0921 34 1 4.3258 2.3914 -2.1140 35 1 4.4943 4.3912 -4.0252 36 1 3.2291 4.4602 -2.7752 37 1 3.8426 5.9635 -3.5045 38 1 6.2607 6.4893 -3.1645 39 1 7.0384 5.8249 -1.7078 40 1 6.2611 6.6522 0.4578 41 1 6.5487 8.8238 -2.4577 42 1 7.4507 8.2455 -1.0364 43 1 5.5769 11.4555 -1.5810 44 1 4.5088 10.1238 -2.0851 45 1 4.2701 10.9063 -0.5043 46 1 5.7248 12.9060 1.1030 47 1 4.9545 -0.7583 -0.0108 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725722453.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:50 Heat of formation + Delta-G solvation = -16.807433 kcal Electronic energy + Delta-G solvation = -27439.015280 eV Core-core repulsion = 23556.818062 eV Total energy + Delta-G solvation = -3882.197218 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.38894 -39.68505 -37.21775 -35.29779 -34.43538 -34.08784 -31.65864 -31.23237 -29.57698 -28.59263 -26.93275 -26.30100 -25.74623 -24.45640 -22.73718 -21.72991 -20.36451 -19.98993 -19.06894 -17.84093 -17.07673 -16.71849 -16.20061 -15.95972 -15.45319 -15.43819 -14.96603 -14.73274 -14.46037 -14.20304 -13.98769 -13.60951 -13.38367 -13.30474 -13.16674 -12.96935 -12.71073 -12.63255 -12.53703 -12.49042 -11.96436 -11.80881 -11.69710 -11.44863 -11.15752 -10.97288 -10.77752 -10.58191 -10.46050 -10.27738 -9.93073 -9.87351 -9.80769 -9.72855 -9.67211 -9.46849 -8.97620 -8.51624 -8.27220 -6.65012 -5.59972 -2.99847 0.39493 1.03832 1.40772 2.46997 2.79747 3.11834 3.48100 3.55244 3.59559 3.73395 4.44683 4.61802 4.67270 4.82473 4.91502 4.94963 4.97122 5.04312 5.08882 5.12283 5.21053 5.29880 5.38118 5.43137 5.48118 5.53516 5.57142 5.63267 5.75934 5.77645 5.90635 5.94622 6.03821 6.06494 6.12454 6.52817 6.63159 6.75803 6.84688 7.45959 7.48162 7.48659 7.78297 7.95379 8.33379 8.46352 8.57274 9.35662 9.98865 10.45086 11.46137 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015913 B = 0.002173 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.139920 B =12881.813926 C =13586.278899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.052 3.948 3 N -0.468 5.468 4 C 0.077 3.923 5 C -0.029 4.029 6 C -0.128 4.128 7 C 0.519 3.481 8 O -0.535 6.535 9 N -0.611 5.611 10 C 0.078 3.922 11 C 0.082 3.918 12 C 0.072 3.928 13 H 0.083 0.917 14 O -0.538 6.538 15 C 0.125 3.875 16 N -0.595 5.595 17 C 0.165 3.835 18 C -0.230 4.230 19 H 0.070 0.930 20 C -0.009 4.009 21 N -0.916 5.916 22 Si 0.903 3.097 23 H -0.278 1.278 24 H -0.294 1.294 25 H -0.292 1.292 26 C -0.259 4.259 27 S 0.104 5.896 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.367 0.633 41 H 0.042 0.958 42 H 0.050 0.950 43 H 0.028 0.972 44 H -0.008 1.008 45 H 0.046 0.954 46 H 0.249 0.751 47 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.215 -27.922 -9.112 30.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.227 4.227 3 N -0.183 5.183 4 C -0.055 4.055 5 C -0.069 4.069 6 C -0.168 4.168 7 C 0.307 3.693 8 O -0.411 6.411 9 N -0.345 5.345 10 C -0.065 4.065 11 C -0.042 4.042 12 C 0.008 3.992 13 H 0.101 0.899 14 O -0.342 6.342 15 C -0.004 4.004 16 N -0.316 5.316 17 C 0.021 3.979 18 C -0.360 4.360 19 H 0.088 0.912 20 C -0.205 4.205 21 N -0.563 5.563 22 Si 0.734 3.266 23 H -0.203 1.203 24 H -0.221 1.221 25 H -0.219 1.219 26 C -0.398 4.398 27 S 0.358 5.642 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.119 0.881 34 H 0.104 0.896 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.214 0.786 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.046 0.954 44 H 0.011 0.989 45 H 0.065 0.935 46 H 0.059 0.941 47 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -8.889 -28.135 -8.698 30.761 hybrid contribution 1.066 0.752 0.880 1.574 sum -7.822 -27.383 -7.818 29.532 Atomic orbital electron populations 1.20466 0.85100 1.04361 1.03973 1.27087 1.01824 0.90833 1.02925 1.66096 1.04570 1.31499 1.16127 1.20353 0.90085 0.94320 1.00700 1.19946 0.95536 0.91774 0.99663 1.21553 1.00331 0.95171 0.99781 1.20468 0.85162 0.82916 0.80787 1.90668 1.37341 1.76873 1.36229 1.47747 1.33088 1.25106 1.28516 1.21778 0.91089 1.02941 0.90702 1.22384 0.93073 0.87390 1.01344 1.23124 1.00831 0.92479 0.82773 0.89923 1.86564 1.35526 1.87909 1.24193 1.21324 0.95190 0.88914 0.95018 1.43786 1.51758 1.27364 1.08741 1.20799 0.92533 0.90927 0.93672 1.19229 1.36239 0.94986 0.85546 0.91190 1.24892 1.02443 0.95167 0.98037 1.70113 1.54954 0.97977 1.33225 0.86180 0.77025 0.77384 0.86000 1.20309 1.22097 1.21856 1.26834 1.03106 0.95642 1.14216 1.83950 0.98231 1.13075 1.68942 0.89494 0.90110 0.89064 0.89476 0.88951 0.88140 0.89589 0.92876 0.91097 0.90889 0.90350 0.89838 0.78621 0.93993 0.93196 0.95417 0.98903 0.93515 0.94088 0.80524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.46 36.01 0.38 -0.05 16 2 C 0.05 0.45 7.39 -13.46 -0.10 0.35 16 3 N -0.47 -5.25 10.34 -8.06 -0.08 -5.34 16 4 C 0.08 0.82 6.08 -84.23 -0.51 0.30 16 5 C -0.03 -0.32 5.00 -27.89 -0.14 -0.46 16 6 C -0.13 -1.41 4.15 -27.88 -0.12 -1.52 16 7 C 0.52 7.34 7.30 -10.98 -0.08 7.26 16 8 O -0.53 -9.32 14.54 -2.28 -0.03 -9.36 16 9 N -0.61 -7.91 2.86 -181.57 -0.52 -8.43 16 10 C 0.08 0.72 10.24 59.84 0.61 1.34 16 11 C 0.08 1.15 5.11 -4.04 -0.02 1.12 16 12 C 0.07 1.29 3.48 -26.73 -0.09 1.20 16 13 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 14 O -0.54 -11.35 11.32 -43.06 -0.49 -11.84 16 15 C 0.12 2.52 5.36 -4.04 -0.02 2.50 16 16 N -0.59 -15.34 2.88 -181.11 -0.52 -15.86 16 17 C 0.17 4.22 8.97 59.85 0.54 4.75 16 18 C -0.23 -6.55 9.08 -15.06 -0.14 -6.69 16 19 H 0.07 1.97 7.69 -52.48 -0.40 1.57 16 20 C -0.01 -0.26 5.08 -17.43 -0.09 -0.35 16 21 N -0.92 -27.72 10.53 55.49 0.58 -27.13 16 22 Si 0.90 23.16 29.58 -169.99 -5.03 18.13 16 23 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 25 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 26 C -0.26 -2.25 11.07 29.12 0.32 -1.93 16 27 S 0.10 0.76 23.18 -107.50 -2.49 -1.73 16 28 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.91 7.98 -51.93 -0.41 0.49 16 32 H 0.09 1.21 8.10 -51.93 -0.42 0.79 16 33 H 0.10 1.14 7.33 -51.93 -0.38 0.76 16 34 H 0.09 0.78 8.11 -51.93 -0.42 0.36 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.59 6.44 -51.93 -0.33 0.26 16 37 H 0.07 0.65 8.07 -51.93 -0.42 0.24 16 38 H 0.08 0.91 8.07 -51.93 -0.42 0.49 16 39 H 0.08 1.25 7.42 -51.93 -0.39 0.86 16 40 H 0.37 7.42 8.74 45.56 0.40 7.82 16 41 H 0.04 0.77 8.07 -51.93 -0.42 0.35 16 42 H 0.05 1.01 8.04 -51.93 -0.42 0.59 16 43 H 0.03 0.75 7.47 -51.92 -0.39 0.36 16 44 H -0.01 -0.17 8.03 -51.93 -0.42 -0.59 16 45 H 0.05 1.30 7.04 -51.93 -0.37 0.94 16 46 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 47 H 0.18 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 399.03 15.07 6.01 6.01 Total: -1.00 -35.66 399.03 -8.90 -44.57 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -6.88 Total: 3.15 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: 0.54 Total: 7.82 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: -0.54 Total: -56.76 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.52 Total: -21.20 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -5.03 Total: 18.13 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.49 Total: -1.73 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.66 -8.90 -44.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725722453.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.760 kcal (2) G-P(sol) polarization free energy of solvation -35.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds