Wall clock time and date at job start Sat Apr 11 2020 06:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 114.00157 * 2 1 4 4 C 1.50706 * 109.47050 * 180.02562 * 3 2 1 5 5 N 1.29427 * 124.80090 * 89.97217 * 4 3 2 6 6 C 1.30944 * 117.35982 * 179.97438 * 5 4 3 7 7 C 1.35661 * 114.19403 * 0.02562 * 6 5 4 8 8 C 1.46684 * 126.13574 * 179.97438 * 7 6 5 9 9 O 1.21684 * 119.99400 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00236 * 179.97438 * 8 7 6 11 11 C 1.46496 * 119.99820 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.47464 * 324.99677 * 11 10 8 13 13 C 1.53006 * 109.46811 * 205.00283 * 11 10 8 14 14 N 1.46498 * 109.47099 * 55.00065 * 13 11 10 15 15 C 1.36938 * 119.99493 * 180.02562 * 14 13 11 16 16 H 1.07992 * 120.00461 * 359.97438 * 15 14 13 17 17 C 1.38819 * 119.99518 * 180.02562 * 15 14 13 18 18 N 1.31622 * 119.99739 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00241 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47118 * 90.00167 * 19 17 15 21 21 H 1.48500 * 109.47181 * 210.00372 * 19 17 15 22 22 H 1.48504 * 109.47101 * 330.00053 * 19 17 15 23 23 C 1.52999 * 109.47487 * 85.00404 * 11 10 8 24 24 C 1.52997 * 109.47317 * 179.97438 * 23 11 10 25 25 C 1.52992 * 109.46961 * 59.99481 * 23 11 10 26 26 C 1.53006 * 109.46623 * 299.99762 * 23 11 10 27 27 S 1.70952 * 124.80434 * 270.28913 * 4 3 2 28 28 H 1.09003 * 109.46865 * 299.99720 * 1 2 3 29 29 H 1.09004 * 109.47540 * 59.99568 * 1 2 3 30 30 H 1.08998 * 109.47708 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47077 * 60.00264 * 3 2 1 32 32 H 1.08995 * 109.47040 * 299.99927 * 3 2 1 33 33 H 1.08003 * 122.90597 * 179.97438 * 6 5 4 34 34 H 0.96998 * 120.00021 * 0.02562 * 10 8 7 35 35 H 1.09007 * 109.46980 * 174.99936 * 13 11 10 36 36 H 1.08993 * 109.47241 * 294.99754 * 13 11 10 37 37 H 0.96998 * 120.00310 * 359.97438 * 14 13 11 38 38 H 0.96993 * 119.99908 * 179.97438 * 18 17 15 39 39 H 1.09002 * 109.47153 * 299.99641 * 24 23 11 40 40 H 1.09001 * 109.46832 * 179.97438 * 24 23 11 41 41 H 1.09004 * 109.47261 * 59.99813 * 24 23 11 42 42 H 1.09001 * 109.47066 * 180.02562 * 25 23 11 43 43 H 1.08996 * 109.47747 * 300.00196 * 25 23 11 44 44 H 1.09002 * 109.47103 * 60.00608 * 25 23 11 45 45 H 1.08993 * 109.46955 * 300.00075 * 26 23 11 46 46 H 1.09000 * 109.47050 * 59.99904 * 26 23 11 47 47 H 1.09001 * 109.47002 * 179.97438 * 26 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 7 4.2484 1.1277 -1.0637 6 6 5.5429 1.0257 -0.8947 7 6 5.9333 0.9951 0.4042 8 6 7.3129 0.8859 0.8904 9 8 8.2332 0.8123 0.0978 10 7 7.5611 0.8672 2.2150 11 6 8.9390 0.7587 2.7005 12 1 9.5125 0.1216 2.0271 13 6 8.9388 0.1479 4.1034 14 7 8.2256 -1.1315 4.0789 15 6 8.0958 -1.8651 5.2279 16 1 8.5195 -1.5007 6.1520 17 6 7.4205 -3.0777 5.2045 18 7 7.2961 -3.7830 6.3088 19 14 6.6882 -3.7084 3.6060 20 1 7.6935 -4.5380 2.8944 21 1 5.4878 -4.5309 3.9020 22 1 6.3012 -2.5576 2.7508 23 6 9.5734 2.1500 2.7501 24 6 11.0122 2.0368 3.2578 25 6 8.7685 3.0440 3.6954 26 6 9.5736 2.7607 1.3472 27 16 4.4853 1.1020 1.4026 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 6.2396 0.9699 -1.7181 34 1 6.8274 0.9255 2.8468 35 1 9.9663 -0.0150 4.4289 36 1 8.4419 0.8277 4.7955 37 1 7.8447 -1.4587 3.2489 38 1 6.8240 -4.6301 6.2926 39 1 11.0117 1.6019 4.2573 40 1 11.4643 3.0280 3.2927 41 1 11.5860 1.3997 2.5846 42 1 9.2201 4.0355 3.7304 43 1 7.7433 3.1249 3.3342 44 1 8.7683 2.6090 4.6948 45 1 10.1470 2.1237 0.6738 46 1 8.5484 2.8414 0.9860 47 1 10.0251 3.7522 1.3826 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725758971.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:57 Heat of formation + Delta-G solvation = -22.319705 kcal Electronic energy + Delta-G solvation = -28306.807212 eV Core-core repulsion = 24424.370964 eV Total energy + Delta-G solvation = -3882.436248 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.52176 -39.73934 -38.15329 -37.42796 -34.64660 -33.46980 -31.80799 -31.29566 -29.00942 -28.04675 -27.21832 -26.86873 -26.39946 -24.39437 -23.64942 -22.04623 -21.26896 -19.82291 -18.80646 -18.70619 -17.74223 -16.98043 -16.75773 -16.33254 -15.88693 -15.80180 -15.42876 -14.87004 -14.65161 -14.34451 -14.21557 -13.99304 -13.74105 -13.48066 -13.13153 -13.03208 -12.83675 -12.74401 -12.35732 -12.07192 -11.91374 -11.84208 -11.73844 -11.59607 -11.46459 -11.28377 -10.88658 -10.83062 -10.63990 -10.35959 -10.30012 -10.09617 -10.04462 -9.85095 -9.68014 -9.64258 -9.22097 -8.96124 -8.83183 -7.29563 -5.81768 -3.18035 -0.01485 0.93829 1.37376 2.22950 3.08371 3.18752 3.34942 3.36854 3.39653 3.44617 3.98601 4.50401 4.55377 4.71545 4.76142 4.86335 4.91332 4.95471 4.97072 5.02643 5.04364 5.14603 5.33121 5.38329 5.46517 5.55055 5.66507 5.74004 5.79991 5.82182 5.86270 5.94615 6.03065 6.06023 6.20374 6.28025 6.32451 6.37501 6.49543 6.59866 6.61563 6.74816 7.34710 7.53231 7.93023 8.16903 8.36859 9.15162 9.87717 10.06563 11.36278 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008095 B = 0.004603 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3457.894747 B = 6081.847748 C = 8620.631003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.381 6.381 3 C 0.138 3.862 4 C 0.040 3.960 5 N -0.460 5.460 6 C 0.112 3.888 7 C -0.282 4.282 8 C 0.594 3.406 9 O -0.523 6.523 10 N -0.705 5.705 11 C 0.144 3.856 12 H 0.091 0.909 13 C 0.145 3.855 14 N -0.756 5.756 15 C -0.247 4.247 16 H 0.092 0.908 17 C 0.010 3.990 18 N -0.931 5.931 19 Si 0.879 3.121 20 H -0.284 1.284 21 H -0.289 1.289 22 H -0.278 1.278 23 C -0.076 4.076 24 C -0.141 4.141 25 C -0.143 4.143 26 C -0.131 4.131 27 S 0.208 5.792 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.190 0.810 34 H 0.401 0.599 35 H 0.047 0.953 36 H 0.038 0.962 37 H 0.362 0.638 38 H 0.260 0.740 39 H 0.064 0.936 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.052 0.948 43 H 0.050 0.950 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.050 0.950 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.175 16.589 -11.380 21.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C 0.058 3.942 4 C -0.235 4.235 5 N -0.176 5.176 6 C -0.046 4.046 7 C -0.407 4.407 8 C 0.379 3.621 9 O -0.401 6.401 10 N -0.355 5.355 11 C 0.040 3.960 12 H 0.109 0.891 13 C 0.018 3.982 14 N -0.402 5.402 15 C -0.376 4.376 16 H 0.109 0.891 17 C -0.186 4.186 18 N -0.579 5.579 19 Si 0.709 3.291 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.205 1.205 23 C -0.077 4.077 24 C -0.199 4.199 25 C -0.201 4.201 26 C -0.188 4.188 27 S 0.465 5.535 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.110 0.890 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.207 0.793 34 H 0.236 0.764 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.195 0.805 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.069 0.931 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.914 16.312 -11.070 21.242 hybrid contribution -0.606 -0.517 -1.527 1.722 sum -8.519 15.795 -12.597 21.925 Atomic orbital electron populations 1.22825 0.79799 1.03525 1.00325 1.87997 1.20473 1.25987 1.95515 1.20819 0.84291 0.86355 1.02688 1.26936 1.00698 1.03941 0.91881 1.66150 1.04911 1.15265 1.31247 1.22146 0.90539 0.96352 0.95557 1.26032 0.98596 1.18028 0.98049 1.16618 0.85634 0.76873 0.82979 1.90831 1.43924 1.50130 1.55214 1.45928 1.10265 1.73452 1.05866 1.21457 0.81250 0.95930 0.97357 0.89056 1.21103 0.97174 0.87820 0.92099 1.42723 1.67163 1.21059 1.09226 1.19023 1.30153 1.00076 0.88384 0.89052 1.24633 1.00528 0.97136 0.96343 1.69691 1.47226 1.15138 1.25800 0.86646 0.79178 0.78874 0.84371 1.21021 1.21565 1.20456 1.20891 0.95841 0.94734 0.96251 1.21894 0.94656 1.01626 1.01728 1.21932 0.99548 0.98936 0.99642 1.21901 1.01884 0.99594 0.95449 1.84117 0.96354 1.62784 1.10255 0.93538 0.93584 0.88983 0.90553 0.89780 0.79292 0.76358 0.93498 0.94453 0.80528 0.92990 0.91678 0.92684 0.92460 0.92908 0.93043 0.91644 0.91868 0.93094 0.93698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.38 -4.24 10.69 -35.23 -0.38 -4.62 16 3 C 0.14 1.28 6.51 36.01 0.23 1.51 16 4 C 0.04 0.49 7.02 -13.29 -0.09 0.39 16 5 N -0.46 -6.27 10.51 -11.50 -0.12 -6.39 16 6 C 0.11 1.54 11.09 -18.85 -0.21 1.33 16 7 C -0.28 -4.03 6.48 -37.10 -0.24 -4.27 16 8 C 0.59 9.39 6.14 -12.85 -0.08 9.31 16 9 O -0.52 -9.19 13.99 5.20 0.07 -9.12 16 10 N -0.70 -10.78 3.64 -55.11 -0.20 -10.99 16 11 C 0.14 2.24 1.69 -67.93 -0.11 2.13 16 12 H 0.09 1.58 7.58 -51.93 -0.39 1.19 16 13 C 0.15 2.62 5.10 -4.04 -0.02 2.60 16 14 N -0.76 -17.35 5.24 -59.91 -0.31 -17.67 16 15 C -0.25 -6.79 10.47 -15.06 -0.16 -6.95 16 16 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 17 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 18 N -0.93 -28.88 13.97 55.49 0.78 -28.10 16 19 Si 0.88 22.43 27.74 -169.99 -4.71 17.71 16 20 H -0.28 -7.32 7.11 56.52 0.40 -6.91 16 21 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 22 H -0.28 -6.75 6.52 56.52 0.37 -6.38 16 23 C -0.08 -0.96 0.62 -154.51 -0.10 -1.06 16 24 C -0.14 -1.66 8.12 37.16 0.30 -1.35 16 25 C -0.14 -1.66 7.97 37.15 0.30 -1.37 16 26 C -0.13 -1.70 7.00 37.16 0.26 -1.44 16 27 S 0.21 2.56 22.31 -107.50 -2.40 0.16 16 28 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.19 2.33 8.06 -52.48 -0.42 1.91 16 34 H 0.40 5.94 7.79 -40.82 -0.32 5.62 16 35 H 0.05 0.85 6.71 -51.93 -0.35 0.50 16 36 H 0.04 0.66 6.17 -51.93 -0.32 0.34 16 37 H 0.36 8.43 5.20 -40.82 -0.21 8.22 16 38 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 39 H 0.06 0.78 6.54 -51.93 -0.34 0.44 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.05 0.59 7.60 -51.93 -0.39 0.20 16 44 H 0.06 0.78 6.32 -51.93 -0.33 0.45 16 45 H 0.06 0.90 7.53 -51.93 -0.39 0.51 16 46 H 0.05 0.71 5.78 -51.93 -0.30 0.41 16 47 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 388.43 15.07 5.85 5.85 Total: -1.00 -33.52 388.43 -7.49 -41.01 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -7.16 Total: 9.79 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 1.10 Total: 2.35 kcal Atomic # 7 Polarization: -63.29 SS G_CDS: 0.14 Total: -63.15 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.30 Total: -13.73 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.71 Total: 17.71 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -2.40 Total: 0.16 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.52 -7.49 -41.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725758971.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.686 kcal (2) G-P(sol) polarization free energy of solvation -33.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds