Wall clock time and date at job start Sat Apr 11 2020 06:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00490 * 2 1 4 4 C 1.50695 * 109.47334 * 180.02562 * 3 2 1 5 5 N 1.29432 * 124.80982 * 89.97190 * 4 3 2 6 6 C 1.30937 * 117.37020 * 180.02562 * 5 4 3 7 7 C 1.35667 * 114.18668 * 0.02562 * 6 5 4 8 8 C 1.46682 * 126.12627 * 179.97438 * 7 6 5 9 9 O 1.21691 * 120.00382 * 359.97438 * 8 7 6 10 10 N 1.34784 * 119.99910 * 179.97438 * 8 7 6 11 11 C 1.46493 * 119.99864 * 179.72544 * 10 8 7 12 12 H 1.08999 * 109.47597 * 34.99540 * 11 10 8 13 13 C 1.52996 * 109.47222 * 155.00033 * 11 10 8 14 14 N 1.46505 * 109.47228 * 304.99519 * 13 11 10 15 15 C 1.36936 * 120.00321 * 179.97438 * 14 13 11 16 16 H 1.08000 * 119.99992 * 0.02562 * 15 14 13 17 17 C 1.38810 * 119.99992 * 180.02562 * 15 14 13 18 18 N 1.31619 * 119.99890 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99894 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47168 * 89.99861 * 19 17 15 21 21 H 1.48504 * 109.47086 * 209.99571 * 19 17 15 22 22 H 1.48496 * 109.47192 * 329.99400 * 19 17 15 23 23 C 1.53000 * 109.47099 * 274.99655 * 11 10 8 24 24 C 1.53001 * 109.47210 * 60.00345 * 23 11 10 25 25 C 1.53003 * 109.47256 * 180.02562 * 23 11 10 26 26 C 1.53002 * 109.47317 * 300.00193 * 23 11 10 27 27 S 1.70953 * 124.80390 * 270.32798 * 4 3 2 28 28 H 1.08998 * 109.47235 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46592 * 299.99726 * 1 2 3 30 30 H 1.09002 * 109.47467 * 59.99641 * 1 2 3 31 31 H 1.09002 * 109.47263 * 59.99867 * 3 2 1 32 32 H 1.09007 * 109.46836 * 300.00217 * 3 2 1 33 33 H 1.08001 * 122.90870 * 180.02562 * 6 5 4 34 34 H 0.97000 * 119.99339 * 359.97438 * 10 8 7 35 35 H 1.08996 * 109.47503 * 64.99504 * 13 11 10 36 36 H 1.08996 * 109.47582 * 184.99542 * 13 11 10 37 37 H 0.97005 * 119.99677 * 0.02562 * 14 13 11 38 38 H 0.97008 * 119.99857 * 180.02562 * 18 17 15 39 39 H 1.08998 * 109.46943 * 59.99550 * 24 23 11 40 40 H 1.08999 * 109.47726 * 180.02562 * 24 23 11 41 41 H 1.09003 * 109.46767 * 300.00064 * 24 23 11 42 42 H 1.08995 * 109.46858 * 60.00223 * 25 23 11 43 43 H 1.09000 * 109.46845 * 179.97438 * 25 23 11 44 44 H 1.08993 * 109.47058 * 300.00032 * 25 23 11 45 45 H 1.09007 * 109.46649 * 59.99988 * 26 23 11 46 46 H 1.09003 * 109.47034 * 179.97438 * 26 23 11 47 47 H 1.08995 * 109.47278 * 300.00072 * 26 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1863 -0.0006 5 7 4.2486 1.1276 -1.0636 6 6 5.5429 1.0246 -0.8947 7 6 5.9331 0.9931 0.4043 8 6 7.3126 0.8826 0.8904 9 8 8.2331 0.8087 0.0978 10 7 7.5608 0.8630 2.2151 11 6 8.9380 0.7466 2.7006 12 1 9.6075 1.2805 2.0262 13 6 9.0375 1.3514 4.1024 14 7 8.5421 2.7299 4.0757 15 6 8.5337 3.4768 5.2235 16 1 8.8925 3.0498 6.1483 17 6 8.0638 4.7827 5.1982 18 7 7.6260 5.3029 4.0713 19 14 8.0529 5.8018 6.7637 20 1 9.3407 6.5306 6.8890 21 1 6.9349 6.7778 6.7113 22 1 7.8743 4.9072 7.9355 23 6 9.3374 -0.7295 2.7526 24 6 9.2381 -1.3344 1.3508 25 6 10.7757 -0.8511 3.2603 26 6 8.3979 -1.4790 3.6994 27 16 4.4852 1.1010 1.4026 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 6.2396 0.9694 -1.7181 34 1 6.8271 0.9223 2.8468 35 1 8.4366 0.7629 4.7956 36 1 10.0777 1.3455 4.4278 37 1 8.2195 3.1134 3.2452 38 1 7.2980 6.2157 4.0536 39 1 9.9074 -0.8004 0.6764 40 1 9.5222 -2.3861 1.3879 41 1 8.2133 -1.2478 0.9896 42 1 10.8460 -0.4203 4.2590 43 1 11.0600 -1.9027 3.2978 44 1 11.4453 -0.3171 2.5862 45 1 7.3731 -1.3924 3.3380 46 1 8.6821 -2.5307 3.7360 47 1 8.4686 -1.0481 4.6980 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725758984.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:00 Heat of formation + Delta-G solvation = -26.710054 kcal Electronic energy + Delta-G solvation = -28120.255816 eV Core-core repulsion = 24237.629188 eV Total energy + Delta-G solvation = -3882.626628 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.36088 -39.59446 -38.08709 -37.28455 -34.46704 -33.32693 -31.68292 -31.04182 -28.82020 -27.70800 -27.14373 -26.77640 -26.29947 -24.28252 -23.70271 -22.04997 -21.28042 -19.65950 -18.63896 -18.56139 -17.29730 -16.90419 -16.61628 -16.21411 -15.79340 -15.61249 -15.34053 -14.86335 -14.46762 -14.36734 -13.93899 -13.86228 -13.67498 -13.36428 -13.15974 -12.94743 -12.72562 -12.66537 -12.24152 -11.96696 -11.82369 -11.79962 -11.58584 -11.38381 -11.24813 -11.12776 -10.84655 -10.76631 -10.55029 -10.26497 -10.20831 -9.98424 -9.96743 -9.77589 -9.69278 -9.52568 -9.06644 -8.92908 -8.66829 -6.98347 -5.80783 -3.10761 0.14187 1.08658 1.52893 2.37457 3.28553 3.29323 3.40208 3.45505 3.46941 3.47392 4.10133 4.53207 4.61479 4.87522 4.91929 4.94982 4.99620 5.04879 5.06670 5.09940 5.15210 5.29029 5.32885 5.50908 5.54918 5.68878 5.77359 5.88010 5.89903 6.00487 6.02132 6.06347 6.11205 6.15027 6.29041 6.41712 6.44329 6.46617 6.61276 6.65491 6.69545 6.88543 7.49441 7.65165 7.70872 8.34559 8.36953 9.48582 10.04187 10.39467 11.41370 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008202 B = 0.003885 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3412.891499 B = 7206.117035 C = 9528.691309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.138 3.862 4 C 0.036 3.964 5 N -0.461 5.461 6 C 0.109 3.891 7 C -0.277 4.277 8 C 0.596 3.404 9 O -0.525 6.525 10 N -0.700 5.700 11 C 0.149 3.851 12 H 0.091 0.909 13 C 0.141 3.859 14 N -0.732 5.732 15 C -0.242 4.242 16 H 0.071 0.929 17 C -0.011 4.011 18 N -0.930 5.930 19 Si 0.906 3.094 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.077 4.077 24 C -0.131 4.131 25 C -0.140 4.140 26 C -0.143 4.143 27 S 0.214 5.786 28 H 0.090 0.910 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.189 0.811 34 H 0.401 0.599 35 H 0.029 0.971 36 H 0.038 0.962 37 H 0.385 0.615 38 H 0.255 0.745 39 H 0.062 0.938 40 H 0.043 0.957 41 H 0.050 0.950 42 H 0.063 0.937 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.051 0.949 46 H 0.051 0.949 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.770 -13.453 -6.357 17.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C 0.059 3.941 4 C -0.239 4.239 5 N -0.177 5.177 6 C -0.049 4.049 7 C -0.402 4.402 8 C 0.381 3.619 9 O -0.404 6.404 10 N -0.350 5.350 11 C 0.045 3.955 12 H 0.109 0.891 13 C 0.013 3.987 14 N -0.377 5.377 15 C -0.373 4.373 16 H 0.089 0.911 17 C -0.207 4.207 18 N -0.578 5.578 19 Si 0.737 3.263 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.078 4.078 24 C -0.188 4.188 25 C -0.198 4.198 26 C -0.200 4.200 27 S 0.471 5.529 28 H 0.109 0.891 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.206 0.794 34 H 0.236 0.764 35 H 0.047 0.953 36 H 0.056 0.944 37 H 0.219 0.781 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.070 0.930 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.516 -13.576 -6.121 17.673 hybrid contribution -0.116 1.099 0.125 1.112 sum -9.631 -12.478 -5.996 16.865 Atomic orbital electron populations 1.22808 0.79965 1.03285 1.00427 1.87953 1.20335 1.26315 1.95554 1.20822 0.84432 0.86047 1.02833 1.26862 1.00556 1.04379 0.92054 1.66128 1.04967 1.15244 1.31324 1.22113 0.90505 0.96678 0.95579 1.26025 0.98665 1.17538 0.97987 1.16592 0.85624 0.76741 0.82983 1.90823 1.43940 1.50354 1.55280 1.45843 1.10213 1.73131 1.05787 1.21363 0.82106 0.94699 0.97354 0.89143 1.21112 0.98098 0.87416 0.92058 1.42369 1.76421 1.08643 1.10237 1.19197 1.35482 0.94096 0.88573 0.91139 1.24738 1.01721 0.97273 0.96959 1.69672 1.48280 1.15127 1.24749 0.86207 0.77194 0.80194 0.82668 1.21722 1.21801 1.20750 1.20910 0.95932 0.94831 0.96155 1.21898 1.02229 0.99179 0.95513 1.21881 0.94937 1.01361 1.01623 1.21927 0.98992 0.99483 0.99581 1.84088 0.96168 1.62575 1.10074 0.89146 0.93571 0.93586 0.90471 0.89800 0.79405 0.76400 0.95305 0.94440 0.78084 0.93490 0.91861 0.93818 0.93048 0.91847 0.92811 0.92480 0.93015 0.93032 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.38 -4.06 10.69 -35.23 -0.38 -4.44 16 3 C 0.14 1.38 6.51 36.00 0.23 1.61 16 4 C 0.04 0.46 7.02 -13.29 -0.09 0.37 16 5 N -0.46 -6.67 10.51 -11.50 -0.12 -6.79 16 6 C 0.11 1.60 11.09 -18.85 -0.21 1.39 16 7 C -0.28 -4.21 6.48 -37.09 -0.24 -4.45 16 8 C 0.60 10.04 6.13 -12.85 -0.08 9.96 16 9 O -0.53 -9.84 14.01 5.20 0.07 -9.77 16 10 N -0.70 -11.40 3.63 -55.12 -0.20 -11.60 16 11 C 0.15 2.47 1.69 -67.94 -0.11 2.36 16 12 H 0.09 1.70 7.57 -51.93 -0.39 1.31 16 13 C 0.14 2.66 5.10 -4.04 -0.02 2.64 16 14 N -0.73 -17.73 5.43 -59.91 -0.33 -18.05 16 15 C -0.24 -6.53 9.99 -15.06 -0.15 -6.68 16 16 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 17 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 18 N -0.93 -27.52 13.06 55.49 0.72 -26.80 16 19 Si 0.91 21.90 29.55 -169.99 -5.02 16.87 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 C -0.08 -1.05 0.62 -154.50 -0.10 -1.14 16 24 C -0.13 -1.83 7.00 37.16 0.26 -1.57 16 25 C -0.14 -1.75 8.12 37.16 0.30 -1.45 16 26 C -0.14 -1.77 7.97 37.16 0.30 -1.48 16 27 S 0.21 2.80 22.31 -107.50 -2.40 0.40 16 28 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.19 2.50 8.06 -52.49 -0.42 2.08 16 34 H 0.40 6.38 7.79 -40.82 -0.32 6.07 16 35 H 0.03 0.53 6.17 -51.93 -0.32 0.21 16 36 H 0.04 0.71 6.71 -51.93 -0.35 0.37 16 37 H 0.39 10.05 7.33 -40.82 -0.30 9.75 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.06 0.96 7.53 -51.93 -0.39 0.57 16 40 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.05 0.77 5.78 -51.93 -0.30 0.47 16 42 H 0.06 0.80 6.54 -51.93 -0.34 0.46 16 43 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.05 0.65 7.60 -51.92 -0.39 0.25 16 46 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.06 0.81 6.32 -51.93 -0.33 0.48 16 LS Contribution 391.57 15.07 5.90 5.90 Total: -1.00 -32.11 391.57 -7.85 -39.96 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -7.21 Total: 11.83 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 1.11 Total: 2.48 kcal Atomic # 7 Polarization: -63.31 SS G_CDS: 0.08 Total: -63.24 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.30 Total: -14.21 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -2.40 Total: 0.40 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.11 -7.85 -39.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725758984.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.245 kcal (2) G-P(sol) polarization free energy of solvation -32.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds