Wall clock time and date at job start Sat Apr 11 2020 06:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00490 * 2 1 4 4 C 1.50695 * 109.47334 * 180.02562 * 3 2 1 5 5 N 1.29432 * 124.80982 * 89.97190 * 4 3 2 6 6 C 1.30937 * 117.37020 * 180.02562 * 5 4 3 7 7 C 1.35667 * 114.18668 * 0.02562 * 6 5 4 8 8 C 1.46682 * 126.12627 * 179.97438 * 7 6 5 9 9 O 1.21691 * 120.00382 * 359.97438 * 8 7 6 10 10 N 1.34784 * 119.99910 * 179.97438 * 8 7 6 11 11 C 1.46493 * 119.99864 * 179.72544 * 10 8 7 12 12 H 1.08999 * 109.47597 * 34.99540 * 11 10 8 13 13 C 1.52996 * 109.47222 * 155.00033 * 11 10 8 14 14 N 1.46505 * 109.47228 * 304.99519 * 13 11 10 15 15 C 1.36936 * 120.00321 * 179.97438 * 14 13 11 16 16 H 1.08000 * 119.99992 * 0.02562 * 15 14 13 17 17 C 1.38810 * 119.99992 * 180.02562 * 15 14 13 18 18 N 1.31619 * 119.99890 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99894 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47168 * 89.99861 * 19 17 15 21 21 H 1.48504 * 109.47086 * 209.99571 * 19 17 15 22 22 H 1.48496 * 109.47192 * 329.99400 * 19 17 15 23 23 C 1.53000 * 109.47099 * 274.99655 * 11 10 8 24 24 C 1.53001 * 109.47210 * 60.00345 * 23 11 10 25 25 C 1.53003 * 109.47256 * 180.02562 * 23 11 10 26 26 C 1.53002 * 109.47317 * 300.00193 * 23 11 10 27 27 S 1.70953 * 124.80390 * 270.32798 * 4 3 2 28 28 H 1.08998 * 109.47235 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46592 * 299.99726 * 1 2 3 30 30 H 1.09002 * 109.47467 * 59.99641 * 1 2 3 31 31 H 1.09002 * 109.47263 * 59.99867 * 3 2 1 32 32 H 1.09007 * 109.46836 * 300.00217 * 3 2 1 33 33 H 1.08001 * 122.90870 * 180.02562 * 6 5 4 34 34 H 0.97000 * 119.99339 * 359.97438 * 10 8 7 35 35 H 1.08996 * 109.47503 * 64.99504 * 13 11 10 36 36 H 1.08996 * 109.47582 * 184.99542 * 13 11 10 37 37 H 0.97005 * 119.99677 * 0.02562 * 14 13 11 38 38 H 0.97008 * 119.99857 * 180.02562 * 18 17 15 39 39 H 1.08998 * 109.46943 * 59.99550 * 24 23 11 40 40 H 1.08999 * 109.47726 * 180.02562 * 24 23 11 41 41 H 1.09003 * 109.46767 * 300.00064 * 24 23 11 42 42 H 1.08995 * 109.46858 * 60.00223 * 25 23 11 43 43 H 1.09000 * 109.46845 * 179.97438 * 25 23 11 44 44 H 1.08993 * 109.47058 * 300.00032 * 25 23 11 45 45 H 1.09007 * 109.46649 * 59.99988 * 26 23 11 46 46 H 1.09003 * 109.47034 * 179.97438 * 26 23 11 47 47 H 1.08995 * 109.47278 * 300.00072 * 26 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1863 -0.0006 5 7 4.2486 1.1276 -1.0636 6 6 5.5429 1.0246 -0.8947 7 6 5.9331 0.9931 0.4043 8 6 7.3126 0.8826 0.8904 9 8 8.2331 0.8087 0.0978 10 7 7.5608 0.8630 2.2151 11 6 8.9380 0.7466 2.7006 12 1 9.6075 1.2805 2.0262 13 6 9.0375 1.3514 4.1024 14 7 8.5421 2.7299 4.0757 15 6 8.5337 3.4768 5.2235 16 1 8.8925 3.0498 6.1483 17 6 8.0638 4.7827 5.1982 18 7 7.6260 5.3029 4.0713 19 14 8.0529 5.8018 6.7637 20 1 9.3407 6.5306 6.8890 21 1 6.9349 6.7778 6.7113 22 1 7.8743 4.9072 7.9355 23 6 9.3374 -0.7295 2.7526 24 6 9.2381 -1.3344 1.3508 25 6 10.7757 -0.8511 3.2603 26 6 8.3979 -1.4790 3.6994 27 16 4.4852 1.1010 1.4026 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 6.2396 0.9694 -1.7181 34 1 6.8271 0.9223 2.8468 35 1 8.4366 0.7629 4.7956 36 1 10.0777 1.3455 4.4278 37 1 8.2195 3.1134 3.2452 38 1 7.2980 6.2157 4.0536 39 1 9.9074 -0.8004 0.6764 40 1 9.5222 -2.3861 1.3879 41 1 8.2133 -1.2478 0.9896 42 1 10.8460 -0.4203 4.2590 43 1 11.0600 -1.9027 3.2978 44 1 11.4453 -0.3171 2.5862 45 1 7.3731 -1.3924 3.3380 46 1 8.6821 -2.5307 3.7360 47 1 8.4686 -1.0481 4.6980 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725758984.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:59 Heat of formation + Delta-G solvation = -49.038276 kcal Electronic energy + Delta-G solvation = -28121.224041 eV Core-core repulsion = 24237.629188 eV Total energy + Delta-G solvation = -3883.594852 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.60758 -40.73064 -38.90029 -38.51383 -36.19899 -34.74897 -33.08890 -32.53513 -29.94172 -29.11276 -28.16223 -27.82177 -27.08629 -25.78556 -25.01081 -23.49597 -22.65050 -20.85553 -19.89470 -19.70182 -19.05470 -17.88193 -17.63285 -17.39280 -16.99397 -16.63434 -16.55324 -16.21144 -15.72804 -15.57830 -15.41253 -15.08710 -14.97892 -14.84101 -14.52465 -14.19737 -13.74595 -13.72170 -13.29654 -13.09326 -13.02899 -12.93089 -12.74567 -12.69979 -12.53499 -12.40475 -12.37259 -12.18917 -12.04416 -11.76184 -11.66531 -11.33303 -11.30789 -10.95586 -10.86164 -10.74508 -10.65140 -10.16270 -9.97491 -8.98596 -7.92372 -5.22030 -0.95999 0.01793 0.44030 1.24739 1.49452 1.50733 1.58880 1.99826 2.08691 2.57215 2.60675 3.25427 3.42020 3.59757 3.68523 3.77523 3.87050 4.01592 4.12400 4.22365 4.24505 4.31440 4.33689 4.43985 4.54084 4.59511 4.62346 4.81652 4.84312 4.87521 4.89365 4.91077 4.95993 5.06052 5.07840 5.13708 5.23326 5.30025 5.38140 5.51433 5.55030 5.58961 6.02672 6.27768 6.32901 6.46203 7.03225 7.35248 8.07948 8.31977 9.30572 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008202 B = 0.003885 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3412.891499 B = 7206.117035 C = 9528.691309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.135 3.865 4 C 0.042 3.958 5 N -0.480 5.480 6 C 0.112 3.888 7 C -0.306 4.306 8 C 0.596 3.404 9 O -0.552 6.552 10 N -0.697 5.697 11 C 0.157 3.843 12 H 0.062 0.938 13 C 0.143 3.857 14 N -0.744 5.744 15 C -0.242 4.242 16 H 0.080 0.920 17 C -0.071 4.071 18 N -0.968 5.968 19 Si 0.971 3.029 20 H -0.292 1.292 21 H -0.297 1.297 22 H -0.266 1.266 23 C -0.071 4.071 24 C -0.123 4.123 25 C -0.139 4.139 26 C -0.139 4.139 27 S 0.237 5.763 28 H 0.100 0.900 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.194 0.806 34 H 0.403 0.597 35 H 0.045 0.955 36 H 0.043 0.957 37 H 0.372 0.628 38 H 0.249 0.751 39 H 0.044 0.956 40 H 0.065 0.935 41 H 0.037 0.963 42 H 0.062 0.938 43 H 0.076 0.924 44 H 0.049 0.951 45 H 0.048 0.952 46 H 0.072 0.928 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.782 -14.757 -5.028 18.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C 0.056 3.944 4 C -0.232 4.232 5 N -0.196 5.196 6 C -0.047 4.047 7 C -0.431 4.431 8 C 0.382 3.618 9 O -0.433 6.433 10 N -0.347 5.347 11 C 0.052 3.948 12 H 0.081 0.919 13 C 0.017 3.983 14 N -0.387 5.387 15 C -0.373 4.373 16 H 0.098 0.902 17 C -0.264 4.264 18 N -0.618 5.618 19 Si 0.800 3.200 20 H -0.220 1.220 21 H -0.224 1.224 22 H -0.191 1.191 23 C -0.072 4.072 24 C -0.180 4.180 25 C -0.196 4.196 26 C -0.196 4.196 27 S 0.494 5.506 28 H 0.118 0.882 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.115 0.885 33 H 0.210 0.790 34 H 0.238 0.762 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.204 0.796 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.084 0.916 41 H 0.056 0.944 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.090 0.910 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.525 -14.927 -4.754 18.873 hybrid contribution 0.148 1.438 -0.320 1.481 sum -10.377 -13.489 -5.074 17.759 Atomic orbital electron populations 1.23035 0.77919 1.04405 1.01703 1.87907 1.22554 1.26491 1.95821 1.21035 0.82338 0.86422 1.04631 1.27531 1.02051 1.02071 0.91570 1.66208 1.04835 1.16512 1.32001 1.22272 0.90944 0.95808 0.95660 1.25891 0.98684 1.19715 0.98804 1.16776 0.86152 0.76088 0.82804 1.90799 1.44995 1.51682 1.55796 1.45792 1.10103 1.73012 1.05775 1.21232 0.81889 0.96444 0.95190 0.91934 1.21248 0.98131 0.85094 0.93819 1.42549 1.76570 1.10500 1.09039 1.19611 1.33798 0.94357 0.89550 0.90235 1.25508 1.02448 0.98642 0.99753 1.69834 1.50090 1.15079 1.26821 0.85186 0.76517 0.78542 0.79760 1.21965 1.22419 1.19095 1.20874 0.97179 0.92579 0.96592 1.21800 1.00928 1.00198 0.95105 1.21877 0.93747 1.02793 1.01198 1.21898 0.98399 1.00481 0.98836 1.83932 0.94892 1.62117 1.09627 0.88194 0.92108 0.92476 0.88102 0.88536 0.78961 0.76182 0.93713 0.93956 0.79564 0.94178 0.93709 0.91642 0.94419 0.91896 0.90543 0.93205 0.93330 0.90953 0.91841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.52 16 2 O -0.41 -7.95 10.69 -148.98 -1.59 -9.54 16 3 C 0.14 2.44 6.51 71.23 0.46 2.91 16 4 C 0.04 1.05 7.02 88.46 0.62 1.67 16 5 N -0.48 -13.74 10.51 -190.30 -2.00 -15.74 16 6 C 0.11 3.33 11.09 84.23 0.93 4.27 16 7 C -0.31 -9.48 6.48 23.88 0.15 -9.33 16 8 C 0.60 20.69 6.13 86.45 0.53 21.22 16 9 O -0.55 -21.56 14.01 -4.32 -0.06 -21.62 16 10 N -0.70 -23.07 3.63 -446.51 -1.62 -24.70 16 11 C 0.16 5.24 1.69 44.99 0.08 5.31 16 12 H 0.06 2.45 7.57 -2.39 -0.02 2.43 16 13 C 0.14 5.34 5.10 86.38 0.44 5.78 16 14 N -0.74 -36.17 5.43 -343.46 -1.87 -38.04 16 15 C -0.24 -12.90 9.99 84.03 0.84 -12.06 16 16 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 17 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 18 N -0.97 -58.13 13.06 21.65 0.28 -57.85 16 19 Si 0.97 44.92 29.55 68.60 2.03 46.95 16 20 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 21 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 22 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 23 C -0.07 -1.85 0.62 -52.18 -0.03 -1.89 16 24 C -0.12 -3.36 7.00 71.98 0.50 -2.85 16 25 C -0.14 -3.22 8.12 71.98 0.58 -2.63 16 26 C -0.14 -3.15 7.97 71.98 0.57 -2.58 16 27 S 0.24 6.08 22.31 -56.49 -1.26 4.82 16 28 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 33 H 0.19 5.32 8.06 -2.91 -0.02 5.29 16 34 H 0.40 12.90 7.79 -92.71 -0.72 12.18 16 35 H 0.05 1.57 6.17 -2.39 -0.01 1.55 16 36 H 0.04 1.57 6.71 -2.39 -0.02 1.55 16 37 H 0.37 19.88 7.33 -92.70 -0.68 19.20 16 38 H 0.25 14.63 8.31 -92.70 -0.77 13.86 16 39 H 0.04 1.38 7.53 -2.39 -0.02 1.36 16 40 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.04 1.12 5.78 -2.39 -0.01 1.11 16 42 H 0.06 1.46 6.54 -2.39 -0.02 1.45 16 43 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.05 1.13 7.60 -2.38 -0.02 1.11 16 46 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.06 1.45 6.32 -2.39 -0.02 1.43 16 Total: -1.00 -69.05 391.57 0.91 -68.14 By element: Atomic # 1 Polarization: 40.13 SS G_CDS: -0.40 Total: 39.73 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: 7.40 Total: 7.85 kcal Atomic # 7 Polarization: -131.12 SS G_CDS: -5.21 Total: -136.32 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -1.65 Total: -31.16 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Atomic # 16 Polarization: 6.08 SS G_CDS: -1.26 Total: 4.82 kcal Total: -69.05 0.91 -68.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725758984.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.101 kcal (2) G-P(sol) polarization free energy of solvation -69.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds