Wall clock time and date at job start Sat Apr 11 2020 06:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46499 * 120.00249 * 2 1 4 4 C 1.53004 * 109.46974 * 270.00009 * 3 2 1 5 5 H 1.09003 * 109.46808 * 304.99411 * 4 3 2 6 6 O 1.42899 * 109.47285 * 64.99688 * 4 3 2 7 7 C 1.53000 * 109.47085 * 184.99712 * 4 3 2 8 8 N 1.46499 * 109.47010 * 179.97438 * 7 4 3 9 9 C 1.36944 * 119.99702 * 179.72455 * 8 7 4 10 10 H 1.07993 * 120.00063 * 0.27982 * 9 8 7 11 11 C 1.38807 * 119.99728 * 180.27642 * 9 8 7 12 12 N 1.31621 * 120.00313 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 120.00191 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.46744 * 89.99903 * 13 11 9 15 15 H 1.48496 * 109.47187 * 210.00108 * 13 11 9 16 16 H 1.48497 * 109.47149 * 330.00418 * 13 11 9 17 17 C 1.34783 * 120.00040 * 179.97438 * 2 1 3 18 18 O 1.21626 * 120.00011 * 176.49549 * 17 2 1 19 19 C 1.47262 * 119.99787 * 356.49704 * 17 2 1 20 20 C 1.35204 * 123.14035 * 186.44456 * 19 17 2 21 21 S 1.70945 * 108.82808 * 179.87083 * 20 19 17 22 22 C 1.70769 * 91.12760 * 0.32793 * 21 20 19 23 23 C 1.50699 * 124.72180 * 179.77284 * 22 21 20 24 24 C 1.52994 * 109.47264 * 240.04091 * 23 22 21 25 25 C 1.53007 * 109.46766 * 0.04040 * 23 22 21 26 26 C 1.53003 * 109.47324 * 120.03660 * 23 22 21 27 27 N 1.28645 * 110.55891 * 359.80362 * 22 21 20 28 28 H 1.09003 * 109.47053 * 95.91694 * 1 2 3 29 29 H 1.08997 * 109.47320 * 215.91881 * 1 2 3 30 30 H 1.08999 * 109.47550 * 335.92056 * 1 2 3 31 31 H 1.09001 * 109.47395 * 149.99865 * 3 2 1 32 32 H 1.08995 * 109.47029 * 29.99620 * 3 2 1 33 33 H 0.96697 * 113.99607 * 60.00285 * 6 4 3 34 34 H 1.09002 * 109.46917 * 59.99970 * 7 4 3 35 35 H 1.09001 * 109.47450 * 300.00210 * 7 4 3 36 36 H 0.96999 * 120.00158 * 359.97438 * 8 7 4 37 37 H 0.96993 * 120.00501 * 179.97438 * 12 11 9 38 38 H 1.08005 * 125.59017 * 359.97438 * 20 19 17 39 39 H 1.09004 * 109.47543 * 59.99705 * 24 23 22 40 40 H 1.08997 * 109.47686 * 179.97438 * 24 23 22 41 41 H 1.08998 * 109.47340 * 299.99713 * 24 23 22 42 42 H 1.08992 * 109.47036 * 60.00162 * 25 23 22 43 43 H 1.09004 * 109.46660 * 180.02562 * 25 23 22 44 44 H 1.09004 * 109.46891 * 299.99590 * 25 23 22 45 45 H 1.08994 * 109.46539 * 60.00166 * 26 23 22 46 46 H 1.08997 * 109.46629 * 179.97438 * 26 23 22 47 47 H 1.08997 * 109.47068 * 300.00551 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 1 2.9643 0.9130 -1.9815 6 8 1.2060 1.9934 -2.0815 7 6 3.3238 2.9680 -1.4444 8 7 3.5684 3.3905 -2.8256 9 6 4.3244 4.5043 -3.0772 10 1 4.7440 5.0686 -2.2576 11 6 4.5514 4.9079 -4.3858 12 7 5.2784 5.9781 -4.6277 13 14 3.8264 3.9314 -5.8036 14 1 2.4808 4.4649 -6.1350 15 1 4.7118 4.0496 -6.9899 16 1 3.7102 2.5035 -5.4129 17 6 2.1388 -1.1672 0.0005 18 8 3.3534 -1.1683 -0.0639 19 6 1.4046 -2.4413 0.0790 20 6 2.0160 -3.6399 0.2111 21 16 0.8241 -4.8640 0.2684 22 6 -0.4206 -3.7066 0.1031 23 6 -1.8921 -4.0289 0.0590 24 6 -2.4798 -3.5486 -1.2694 25 6 -2.0868 -5.5413 0.1858 26 6 -2.6034 -3.3244 1.2160 27 7 0.0726 -2.5213 0.0208 28 1 -0.3633 -0.1059 -1.0222 29 1 -0.3634 -0.8322 0.6028 30 1 -0.3634 0.9382 0.4193 31 1 3.1499 1.1384 0.5138 32 1 1.6084 2.0283 0.5138 33 1 0.6956 2.6949 -1.6543 34 1 4.2745 2.7520 -0.9570 35 1 2.8121 3.7654 -0.9054 36 1 3.1919 2.8834 -3.5619 37 1 5.4374 6.2600 -5.5421 38 1 3.0827 -3.7981 0.2723 39 1 -1.9730 -4.0505 -2.0937 40 1 -3.5440 -3.7821 -1.3015 41 1 -2.3410 -2.4713 -1.3597 42 1 -1.6682 -5.8834 1.1321 43 1 -3.1512 -5.7744 0.1534 44 1 -1.5801 -6.0432 -0.6385 45 1 -2.4646 -2.2471 1.1256 46 1 -3.6678 -3.5572 1.1837 47 1 -2.1847 -3.6666 2.1623 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734529041.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:50 Heat of formation + Delta-G solvation = -22.010052 kcal Electronic energy + Delta-G solvation = -27852.059193 eV Core-core repulsion = 23969.636373 eV Total energy + Delta-G solvation = -3882.422821 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.99359 -39.31220 -37.61903 -36.90871 -35.24671 -34.09490 -31.47818 -30.52941 -29.85718 -27.96868 -27.72247 -26.86618 -26.63817 -25.13123 -23.08389 -21.87005 -21.22328 -19.83675 -19.45174 -18.37317 -17.66238 -16.70849 -16.38741 -16.28755 -15.86253 -15.32985 -15.19225 -14.84596 -14.63178 -14.43643 -14.15816 -13.91732 -13.60971 -13.39941 -13.24894 -12.88356 -12.85368 -12.71641 -12.64146 -12.38014 -12.18462 -12.16461 -12.11306 -11.88459 -11.58372 -11.53672 -11.39324 -11.17543 -10.81977 -10.76440 -10.27903 -10.13790 -9.96761 -9.82303 -9.71374 -9.53210 -9.24347 -8.86300 -8.46771 -7.17978 -5.72070 -3.07088 0.21380 0.88195 1.29026 1.72111 2.93344 3.18946 3.45550 3.47917 3.51645 3.52376 4.17024 4.37142 4.38363 4.62848 4.66060 4.68963 4.82603 4.96210 4.98789 5.03774 5.11363 5.12012 5.25721 5.26598 5.33096 5.37431 5.41661 5.47322 5.56563 5.59461 5.60774 5.72015 5.79463 5.80821 5.87878 5.90910 5.93684 6.07651 6.48416 6.51608 6.69467 7.07631 7.30718 7.93944 8.05461 8.05677 8.47061 9.27202 9.99738 10.20433 11.46178 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018772 B = 0.002407 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.231519 B =11631.820085 C =11903.132567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.589 5.589 3 C 0.087 3.913 4 C 0.083 3.917 5 H 0.100 0.900 6 O -0.553 6.553 7 C 0.131 3.869 8 N -0.749 5.749 9 C -0.244 4.244 10 H 0.089 0.911 11 C 0.004 3.996 12 N -0.935 5.935 13 Si 0.887 3.113 14 H -0.284 1.284 15 H -0.292 1.292 16 H -0.277 1.277 17 C 0.587 3.413 18 O -0.533 6.533 19 C 0.017 3.983 20 C -0.232 4.232 21 S 0.208 5.792 22 C 0.032 3.968 23 C 0.012 3.988 24 C -0.136 4.136 25 C -0.156 4.156 26 C -0.135 4.135 27 N -0.431 5.431 28 H 0.059 0.941 29 H 0.101 0.899 30 H 0.058 0.942 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.369 0.631 34 H 0.036 0.964 35 H 0.029 0.971 36 H 0.366 0.634 37 H 0.259 0.741 38 H 0.188 0.812 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.880 -27.013 15.598 36.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.319 5.319 3 C -0.036 4.036 4 C 0.022 3.978 5 H 0.117 0.883 6 O -0.358 6.358 7 C 0.003 3.997 8 N -0.396 5.396 9 C -0.374 4.374 10 H 0.107 0.893 11 C -0.191 4.191 12 N -0.583 5.583 13 Si 0.717 3.283 14 H -0.210 1.210 15 H -0.218 1.218 16 H -0.203 1.203 17 C 0.372 3.628 18 O -0.410 6.410 19 C -0.117 4.117 20 C -0.374 4.374 21 S 0.468 5.532 22 C -0.247 4.247 23 C 0.008 3.992 24 C -0.195 4.195 25 C -0.214 4.214 26 C -0.194 4.194 27 N -0.147 5.147 28 H 0.078 0.922 29 H 0.119 0.881 30 H 0.077 0.923 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.215 0.785 34 H 0.054 0.946 35 H 0.047 0.953 36 H 0.200 0.800 37 H 0.069 0.931 38 H 0.205 0.795 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.187 -27.884 15.249 37.124 hybrid contribution 0.048 0.835 -0.835 1.182 sum -19.138 -27.049 14.414 36.134 Atomic orbital electron populations 1.22306 0.78010 1.02882 1.03247 1.47516 1.07972 1.05041 1.71400 1.22294 0.98505 0.84445 0.98378 1.22595 0.85117 0.98097 0.91968 0.88252 1.86589 1.32440 1.59298 1.57463 1.21195 0.96868 0.93040 0.88636 1.42583 1.63134 1.32462 1.01376 1.19056 1.23574 1.01138 0.93635 0.89286 1.24658 0.99958 0.97581 0.96950 1.69706 1.43355 1.25768 1.19474 0.86499 0.78721 0.80152 0.82923 1.21037 1.21817 1.20269 1.17147 0.86224 0.82264 0.77152 1.90843 1.12798 1.86740 1.50630 1.20398 0.88454 0.95009 1.07847 1.26651 1.07107 0.96256 1.07345 1.82826 0.95141 1.11313 1.63961 1.27408 1.01541 0.91705 1.04094 1.19240 0.85264 0.96387 0.98267 1.21861 1.00563 1.02611 0.94440 1.22049 1.03528 0.93220 1.02588 1.21857 0.99944 1.01300 0.96297 1.67185 1.09847 1.22481 1.15146 0.92204 0.88070 0.92301 0.88730 0.89752 0.78459 0.94646 0.95341 0.80046 0.93091 0.79452 0.92411 0.91488 0.91193 0.91777 0.90465 0.91733 0.91334 0.91445 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.85 9.15 59.84 0.55 1.40 16 2 N -0.59 -7.95 2.84 -182.92 -0.52 -8.46 16 3 C 0.09 1.19 5.08 -4.04 -0.02 1.17 16 4 C 0.08 1.40 3.30 -26.73 -0.09 1.32 16 5 H 0.10 1.97 8.14 -51.93 -0.42 1.55 16 6 O -0.55 -9.16 12.64 -35.23 -0.45 -9.60 16 7 C 0.13 2.63 5.92 -4.04 -0.02 2.61 16 8 N -0.75 -19.07 5.30 -59.91 -0.32 -19.38 16 9 C -0.24 -7.25 10.47 -15.06 -0.16 -7.41 16 10 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 11 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 12 N -0.93 -30.34 13.97 55.49 0.78 -29.56 16 13 Si 0.89 23.56 27.74 -169.99 -4.71 18.84 16 14 H -0.28 -7.45 7.11 56.52 0.40 -7.04 16 15 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 16 H -0.28 -7.15 6.52 56.52 0.37 -6.78 16 17 C 0.59 8.90 7.64 -12.59 -0.10 8.80 16 18 O -0.53 -9.69 16.34 5.25 0.09 -9.61 16 19 C 0.02 0.22 6.50 -84.53 -0.55 -0.33 16 20 C -0.23 -2.40 10.62 29.65 0.31 -2.09 16 21 S 0.21 1.47 21.28 -107.50 -2.29 -0.82 16 22 C 0.03 0.26 5.74 -13.61 -0.08 0.18 16 23 C 0.01 0.07 0.99 -155.66 -0.15 -0.09 16 24 C -0.14 -0.80 8.45 37.15 0.31 -0.49 16 25 C -0.16 -0.58 7.53 37.16 0.28 -0.30 16 26 C -0.14 -0.68 8.45 37.16 0.31 -0.36 16 27 N -0.43 -4.52 6.72 -8.51 -0.06 -4.58 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.10 1.04 5.21 -51.93 -0.27 0.77 16 30 H 0.06 0.53 7.83 -51.93 -0.41 0.12 16 31 H 0.09 1.37 7.47 -51.93 -0.39 0.98 16 32 H 0.08 0.92 7.85 -51.93 -0.41 0.51 16 33 H 0.37 4.79 9.04 45.56 0.41 5.20 16 34 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.37 9.43 5.41 -40.82 -0.22 9.21 16 37 H 0.26 7.99 8.31 -40.82 -0.34 7.65 16 38 H 0.19 1.84 8.04 -52.48 -0.42 1.41 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.21 7.91 -51.93 -0.41 -0.20 16 43 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.06 0.24 7.91 -51.93 -0.41 -0.17 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 47 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 395.48 15.07 5.96 5.96 Total: -1.00 -36.72 395.48 -7.78 -44.50 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -6.77 Total: 8.28 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 0.51 Total: 4.44 kcal Atomic # 7 Polarization: -61.87 SS G_CDS: -0.12 Total: -61.99 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.36 Total: -19.21 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -4.71 Total: 18.84 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -2.29 Total: -0.82 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.72 -7.78 -44.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734529041.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.491 kcal (2) G-P(sol) polarization free energy of solvation -36.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds