Wall clock time and date at job start Sat Apr 11 2020 06:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46499 * 120.00249 * 2 1 4 4 C 1.53004 * 109.46974 * 270.00009 * 3 2 1 5 5 H 1.09003 * 109.46808 * 304.99411 * 4 3 2 6 6 O 1.42899 * 109.47285 * 64.99688 * 4 3 2 7 7 C 1.53000 * 109.47085 * 184.99712 * 4 3 2 8 8 N 1.46499 * 109.47010 * 179.97438 * 7 4 3 9 9 C 1.36944 * 119.99702 * 179.72455 * 8 7 4 10 10 H 1.07993 * 120.00063 * 0.27982 * 9 8 7 11 11 C 1.38807 * 119.99728 * 180.27642 * 9 8 7 12 12 N 1.31621 * 120.00313 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 120.00191 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.46744 * 89.99903 * 13 11 9 15 15 H 1.48496 * 109.47187 * 210.00108 * 13 11 9 16 16 H 1.48497 * 109.47149 * 330.00418 * 13 11 9 17 17 C 1.34783 * 120.00040 * 179.97438 * 2 1 3 18 18 O 1.21626 * 120.00011 * 176.49549 * 17 2 1 19 19 C 1.47262 * 119.99787 * 356.49704 * 17 2 1 20 20 C 1.35204 * 123.14035 * 186.44456 * 19 17 2 21 21 S 1.70945 * 108.82808 * 179.87083 * 20 19 17 22 22 C 1.70769 * 91.12760 * 0.32793 * 21 20 19 23 23 C 1.50699 * 124.72180 * 179.77284 * 22 21 20 24 24 C 1.52994 * 109.47264 * 240.04091 * 23 22 21 25 25 C 1.53007 * 109.46766 * 0.04040 * 23 22 21 26 26 C 1.53003 * 109.47324 * 120.03660 * 23 22 21 27 27 N 1.28645 * 110.55891 * 359.80362 * 22 21 20 28 28 H 1.09003 * 109.47053 * 95.91694 * 1 2 3 29 29 H 1.08997 * 109.47320 * 215.91881 * 1 2 3 30 30 H 1.08999 * 109.47550 * 335.92056 * 1 2 3 31 31 H 1.09001 * 109.47395 * 149.99865 * 3 2 1 32 32 H 1.08995 * 109.47029 * 29.99620 * 3 2 1 33 33 H 0.96697 * 113.99607 * 60.00285 * 6 4 3 34 34 H 1.09002 * 109.46917 * 59.99970 * 7 4 3 35 35 H 1.09001 * 109.47450 * 300.00210 * 7 4 3 36 36 H 0.96999 * 120.00158 * 359.97438 * 8 7 4 37 37 H 0.96993 * 120.00501 * 179.97438 * 12 11 9 38 38 H 1.08005 * 125.59017 * 359.97438 * 20 19 17 39 39 H 1.09004 * 109.47543 * 59.99705 * 24 23 22 40 40 H 1.08997 * 109.47686 * 179.97438 * 24 23 22 41 41 H 1.08998 * 109.47340 * 299.99713 * 24 23 22 42 42 H 1.08992 * 109.47036 * 60.00162 * 25 23 22 43 43 H 1.09004 * 109.46660 * 180.02562 * 25 23 22 44 44 H 1.09004 * 109.46891 * 299.99590 * 25 23 22 45 45 H 1.08994 * 109.46539 * 60.00166 * 26 23 22 46 46 H 1.08997 * 109.46629 * 179.97438 * 26 23 22 47 47 H 1.08997 * 109.47068 * 300.00551 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 1 2.9643 0.9130 -1.9815 6 8 1.2060 1.9934 -2.0815 7 6 3.3238 2.9680 -1.4444 8 7 3.5684 3.3905 -2.8256 9 6 4.3244 4.5043 -3.0772 10 1 4.7440 5.0686 -2.2576 11 6 4.5514 4.9079 -4.3858 12 7 5.2784 5.9781 -4.6277 13 14 3.8264 3.9314 -5.8036 14 1 2.4808 4.4649 -6.1350 15 1 4.7118 4.0496 -6.9899 16 1 3.7102 2.5035 -5.4129 17 6 2.1388 -1.1672 0.0005 18 8 3.3534 -1.1683 -0.0639 19 6 1.4046 -2.4413 0.0790 20 6 2.0160 -3.6399 0.2111 21 16 0.8241 -4.8640 0.2684 22 6 -0.4206 -3.7066 0.1031 23 6 -1.8921 -4.0289 0.0590 24 6 -2.4798 -3.5486 -1.2694 25 6 -2.0868 -5.5413 0.1858 26 6 -2.6034 -3.3244 1.2160 27 7 0.0726 -2.5213 0.0208 28 1 -0.3633 -0.1059 -1.0222 29 1 -0.3634 -0.8322 0.6028 30 1 -0.3634 0.9382 0.4193 31 1 3.1499 1.1384 0.5138 32 1 1.6084 2.0283 0.5138 33 1 0.6956 2.6949 -1.6543 34 1 4.2745 2.7520 -0.9570 35 1 2.8121 3.7654 -0.9054 36 1 3.1919 2.8834 -3.5619 37 1 5.4374 6.2600 -5.5421 38 1 3.0827 -3.7981 0.2723 39 1 -1.9730 -4.0505 -2.0937 40 1 -3.5440 -3.7821 -1.3015 41 1 -2.3410 -2.4713 -1.3597 42 1 -1.6682 -5.8834 1.1321 43 1 -3.1512 -5.7744 0.1534 44 1 -1.5801 -6.0432 -0.6385 45 1 -2.4646 -2.2471 1.1256 46 1 -3.6678 -3.5572 1.1837 47 1 -2.1847 -3.6666 2.1623 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734529041.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:49 Heat of formation + Delta-G solvation = -49.554474 kcal Electronic energy + Delta-G solvation = -27853.253609 eV Core-core repulsion = 23969.636373 eV Total energy + Delta-G solvation = -3883.617236 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.87172 -40.26522 -38.91211 -37.49965 -36.56810 -35.89856 -33.53846 -31.60327 -31.03810 -28.34193 -28.20460 -28.11817 -27.56955 -26.24582 -24.52650 -23.19808 -22.72810 -20.49843 -20.25467 -19.85023 -19.21678 -17.84430 -17.48322 -17.21061 -16.82290 -16.60967 -16.41486 -16.12504 -15.84983 -15.38028 -15.12885 -15.07130 -14.80653 -14.53347 -14.29765 -14.27794 -13.93511 -13.79510 -13.52686 -13.32003 -13.11738 -13.04672 -12.87576 -12.75584 -12.68225 -12.54702 -12.38829 -12.33170 -12.01195 -11.94645 -11.89317 -11.81730 -11.42449 -11.14981 -11.06717 -10.63085 -10.46228 -9.98022 -9.56688 -9.36003 -8.07968 -5.41029 -0.53910 0.23331 0.58942 0.86137 1.34419 1.35809 1.44074 1.92867 2.18607 2.43424 2.81218 3.22506 3.32138 3.48976 3.61240 3.84409 3.94707 3.99907 4.01278 4.06010 4.17396 4.20131 4.32727 4.43588 4.48171 4.61275 4.65274 4.76716 4.80340 4.86492 4.89610 4.92232 5.02742 5.03343 5.07415 5.11385 5.22197 5.31284 5.42006 5.44478 5.52340 5.69111 6.15964 6.18272 6.42926 6.81273 6.97398 7.02456 7.78611 7.97288 9.13323 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018772 B = 0.002407 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.231519 B =11631.820085 C =11903.132567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.587 5.587 3 C 0.094 3.906 4 C 0.102 3.898 5 H 0.067 0.933 6 O -0.562 6.562 7 C 0.127 3.873 8 N -0.755 5.755 9 C -0.236 4.236 10 H 0.062 0.938 11 C -0.060 4.060 12 N -0.980 5.980 13 Si 0.956 3.044 14 H -0.274 1.274 15 H -0.292 1.292 16 H -0.267 1.267 17 C 0.577 3.423 18 O -0.578 6.578 19 C -0.009 4.009 20 C -0.250 4.250 21 S 0.287 5.713 22 C 0.023 3.977 23 C 0.012 3.988 24 C -0.135 4.135 25 C -0.157 4.157 26 C -0.133 4.133 27 N -0.445 5.445 28 H 0.048 0.952 29 H 0.108 0.892 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.121 0.879 33 H 0.387 0.613 34 H 0.029 0.971 35 H 0.049 0.951 36 H 0.365 0.635 37 H 0.259 0.741 38 H 0.185 0.815 39 H 0.050 0.950 40 H 0.086 0.914 41 H 0.051 0.949 42 H 0.070 0.930 43 H 0.094 0.906 44 H 0.065 0.935 45 H 0.055 0.945 46 H 0.085 0.915 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.937 -29.470 16.280 40.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.316 5.316 3 C -0.030 4.030 4 C 0.041 3.959 5 H 0.085 0.915 6 O -0.369 6.369 7 C 0.000 4.000 8 N -0.401 5.401 9 C -0.367 4.367 10 H 0.080 0.920 11 C -0.252 4.252 12 N -0.630 5.630 13 Si 0.784 3.216 14 H -0.200 1.200 15 H -0.218 1.218 16 H -0.193 1.193 17 C 0.363 3.637 18 O -0.458 6.458 19 C -0.143 4.143 20 C -0.393 4.393 21 S 0.548 5.452 22 C -0.256 4.256 23 C 0.008 3.992 24 C -0.194 4.194 25 C -0.214 4.214 26 C -0.192 4.192 27 N -0.160 5.160 28 H 0.066 0.934 29 H 0.126 0.874 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.139 0.861 33 H 0.236 0.764 34 H 0.047 0.953 35 H 0.067 0.933 36 H 0.198 0.802 37 H 0.068 0.932 38 H 0.203 0.797 39 H 0.069 0.931 40 H 0.105 0.895 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.113 0.887 44 H 0.084 0.916 45 H 0.074 0.926 46 H 0.104 0.896 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -22.308 -30.368 15.975 40.927 hybrid contribution 0.955 1.531 -0.952 2.040 sum -21.353 -28.837 15.023 38.900 Atomic orbital electron populations 1.22396 0.76212 1.04552 1.02846 1.47634 1.09009 1.04506 1.70490 1.22192 0.99118 0.85603 0.96065 1.22219 0.84647 0.95363 0.93665 0.91507 1.86556 1.32039 1.60227 1.58093 1.21408 0.97515 0.95058 0.85991 1.42626 1.62604 1.31276 1.03611 1.19070 1.22987 1.01669 0.92948 0.92037 1.25448 1.01052 0.98934 0.99792 1.69864 1.45343 1.27784 1.20052 0.85396 0.78059 0.78953 0.79221 1.20001 1.21804 1.19299 1.17663 0.86027 0.83604 0.76372 1.90800 1.14656 1.87546 1.52817 1.20171 0.89482 0.94304 1.10387 1.26901 1.08200 0.97341 1.06883 1.82512 0.92449 1.08525 1.61749 1.27995 1.03165 0.91672 1.02801 1.19406 0.83514 0.97885 0.98366 1.21856 1.01784 1.01362 0.94359 1.22091 1.04927 0.91428 1.03003 1.21853 1.01001 1.00395 0.95969 1.67144 1.08804 1.23893 1.16173 0.93374 0.87399 0.89879 0.89775 0.86089 0.76370 0.95256 0.93323 0.80152 0.93178 0.79723 0.93052 0.89540 0.92957 0.91091 0.88699 0.91571 0.92622 0.89642 0.92333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.65 9.15 127.77 1.17 2.82 16 2 N -0.59 -15.55 2.84 -850.86 -2.41 -17.97 16 3 C 0.09 2.47 5.08 86.38 0.44 2.91 16 4 C 0.10 3.41 3.30 30.60 0.10 3.51 16 5 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 6 O -0.56 -17.67 12.64 -148.98 -1.88 -19.56 16 7 C 0.13 5.06 5.92 86.38 0.51 5.57 16 8 N -0.76 -38.24 5.30 -343.45 -1.82 -40.06 16 9 C -0.24 -14.17 10.47 84.03 0.88 -13.29 16 10 H 0.06 3.97 8.06 -2.91 -0.02 3.94 16 11 C -0.06 -3.74 5.50 84.86 0.47 -3.27 16 12 N -0.98 -64.77 13.97 21.65 0.30 -64.47 16 13 Si 0.96 48.99 27.74 68.60 1.90 50.89 16 14 H -0.27 -13.54 7.11 99.48 0.71 -12.84 16 15 H -0.29 -14.84 7.11 99.48 0.71 -14.13 16 16 H -0.27 -13.15 6.52 99.48 0.65 -12.51 16 17 C 0.58 17.87 7.64 86.61 0.66 18.53 16 18 O -0.58 -21.97 16.34 -4.11 -0.07 -22.04 16 19 C -0.01 -0.22 6.50 40.55 0.26 0.05 16 20 C -0.25 -5.13 10.62 67.12 0.71 -4.42 16 21 S 0.29 3.48 21.28 -56.49 -1.20 2.28 16 22 C 0.02 0.33 5.74 88.57 0.51 0.84 16 23 C 0.01 0.11 0.99 -52.93 -0.05 0.05 16 24 C -0.13 -1.32 8.45 71.98 0.61 -0.71 16 25 C -0.16 -0.66 7.53 71.98 0.54 -0.11 16 26 C -0.13 -1.01 8.45 71.98 0.61 -0.40 16 27 N -0.44 -8.97 6.72 -180.84 -1.21 -10.19 16 28 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.11 2.10 5.21 -2.39 -0.01 2.08 16 30 H 0.08 1.26 7.83 -2.39 -0.02 1.24 16 31 H 0.08 2.43 7.47 -2.39 -0.02 2.42 16 32 H 0.12 2.29 7.85 -2.39 -0.02 2.27 16 33 H 0.39 9.00 9.04 -74.06 -0.67 8.33 16 34 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.37 18.51 5.41 -92.71 -0.50 18.01 16 37 H 0.26 16.27 8.31 -92.71 -0.77 15.49 16 38 H 0.19 3.73 8.04 -2.91 -0.02 3.71 16 39 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.07 0.22 7.91 -2.39 -0.02 0.20 16 43 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 44 H 0.07 0.28 7.91 -2.39 -0.02 0.26 16 45 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 47 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 Total: -1.00 -81.54 395.48 0.78 -80.76 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: -0.25 Total: 28.29 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: 7.42 Total: 12.06 kcal Atomic # 7 Polarization: -127.54 SS G_CDS: -5.15 Total: -132.69 kcal Atomic # 8 Polarization: -39.65 SS G_CDS: -1.95 Total: -41.60 kcal Atomic # 14 Polarization: 48.99 SS G_CDS: 1.90 Total: 50.89 kcal Atomic # 16 Polarization: 3.48 SS G_CDS: -1.20 Total: 2.28 kcal Total: -81.54 0.78 -80.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734529041.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.207 kcal (2) G-P(sol) polarization free energy of solvation -81.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds