Wall clock time and date at job start Sat Apr 11 2020 06:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50701 * 109.47513 * 2 1 4 4 N 1.30256 * 125.61946 * 89.97168 * 3 2 1 5 5 C 1.34476 * 108.69854 * 179.77799 * 4 3 2 6 6 C 1.50705 * 126.16474 * 180.26910 * 5 4 3 7 7 C 1.34332 * 107.66989 * 0.39707 * 5 4 3 8 8 C 1.50697 * 126.44241 * 179.87480 * 7 5 4 9 9 N 1.46905 * 109.47066 * 89.71133 * 8 7 5 10 10 C 1.46901 * 110.99870 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.46917 * 324.99892 * 10 9 8 12 12 C 1.52993 * 109.47269 * 84.99904 * 10 9 8 13 13 C 1.53001 * 109.47087 * 205.00123 * 10 9 8 14 14 N 1.46501 * 109.47296 * 54.99617 * 13 10 9 15 15 C 1.34774 * 120.00299 * 180.02562 * 14 13 10 16 16 O 1.21285 * 119.99737 * 0.02562 * 15 14 13 17 17 C 1.50696 * 120.00101 * 180.02562 * 15 14 13 18 18 S 1.81002 * 109.46940 * 179.97438 * 17 15 14 19 19 C 1.76202 * 99.99869 * 179.97438 * 18 17 15 20 20 H 1.07998 * 120.00267 * 0.02562 * 19 18 17 21 21 C 1.38804 * 119.99969 * 179.97438 * 19 18 17 22 22 N 1.31629 * 119.99809 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00018 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46877 * 60.00478 * 23 21 19 25 25 H 1.48501 * 109.47027 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47221 * 300.00499 * 23 21 19 27 27 O 1.33963 * 125.61710 * 270.00169 * 3 2 1 28 28 H 1.09002 * 109.47108 * 60.00207 * 1 2 3 29 29 H 1.09001 * 109.47439 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47303 * 300.00593 * 1 2 3 31 31 H 1.09002 * 109.47431 * 239.99848 * 2 1 3 32 32 H 1.09003 * 109.47205 * 120.00333 * 2 1 3 33 33 H 1.09004 * 109.47091 * 270.15081 * 6 5 4 34 34 H 1.09004 * 109.47053 * 30.14702 * 6 5 4 35 35 H 1.09000 * 109.46937 * 150.15151 * 6 5 4 36 36 H 1.09001 * 109.47558 * 329.71297 * 8 7 5 37 37 H 1.08998 * 109.47216 * 209.70959 * 8 7 5 38 38 H 1.00901 * 110.99869 * 56.04737 * 9 8 7 39 39 H 1.09006 * 109.47343 * 180.02562 * 12 10 9 40 40 H 1.09004 * 109.47587 * 300.00069 * 12 10 9 41 41 H 1.09000 * 109.47161 * 60.00137 * 12 10 9 42 42 H 1.08992 * 109.47393 * 174.99979 * 13 10 9 43 43 H 1.09007 * 109.46815 * 294.99989 * 13 10 9 44 44 H 0.97008 * 119.99646 * 0.02562 * 14 13 10 45 45 H 1.08996 * 109.47568 * 299.99754 * 17 15 14 46 46 H 1.08997 * 109.47105 * 60.00176 * 17 15 14 47 47 H 0.96996 * 119.99783 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2848 2.1362 1.0589 5 6 2.7186 3.3474 0.6675 6 6 3.1269 4.4810 1.5726 7 6 2.7196 3.3657 -0.6757 8 6 3.1279 4.5195 -1.5549 9 7 4.5663 4.4326 -1.8403 10 6 5.0013 5.5442 -2.6966 11 1 4.2070 5.7929 -3.4004 12 6 5.3140 6.7645 -1.8284 13 6 6.2563 5.1324 -3.4686 14 7 5.9915 3.8951 -4.2071 15 6 6.9599 3.3410 -4.9631 16 8 8.0509 3.8664 -5.0316 17 6 6.6872 2.0686 -5.7231 18 16 8.1721 1.5814 -6.6364 19 6 7.5870 0.1098 -7.4089 20 1 6.5738 -0.2231 -7.2391 21 6 8.4281 -0.6211 -8.2365 22 7 9.6630 -0.2151 -8.4438 23 14 7.8077 -2.1808 -9.0560 24 1 6.6457 -1.8564 -9.9219 25 1 8.8916 -2.7708 -9.8820 26 1 7.3927 -3.1555 -8.0153 27 8 2.2924 2.1563 -1.0890 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.2575 5.0998 1.7948 34 1 3.5321 4.0772 2.5005 35 1 3.8864 5.0860 1.0773 36 1 2.9149 5.4586 -1.0443 37 1 2.5690 4.4794 -2.4899 38 1 4.7995 3.5431 -2.2557 39 1 5.6363 7.5895 -2.4638 40 1 4.4198 7.0580 -1.2784 41 1 6.1082 6.5158 -1.1246 42 1 6.5278 5.9223 -4.1688 43 1 7.0762 4.9694 -2.7689 44 1 5.1190 3.4747 -4.1519 45 1 6.4151 1.2785 -5.0233 46 1 5.8679 2.2321 -6.4231 47 1 10.2506 -0.7257 -9.0225 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752860917.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:58 Heat of formation + Delta-G solvation = -27.917091 kcal Electronic energy + Delta-G solvation = -26680.924404 eV Core-core repulsion = 22798.245435 eV Total energy + Delta-G solvation = -3882.678969 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.62237 -39.50519 -37.73965 -35.43756 -34.92692 -33.91791 -32.44525 -32.20575 -30.51642 -29.41424 -27.91723 -26.22790 -25.59347 -25.24522 -23.39495 -21.84414 -21.01479 -20.75520 -20.45823 -17.99495 -17.19655 -17.05486 -16.59228 -16.21581 -16.17620 -15.52346 -15.16616 -14.92933 -14.82032 -14.80213 -14.20832 -13.94554 -13.55633 -13.50518 -13.34183 -13.12694 -12.96401 -12.93672 -12.83306 -12.66016 -12.45754 -12.19411 -12.13742 -12.04865 -11.76049 -11.59255 -11.28270 -11.13591 -11.06259 -11.05177 -10.78275 -10.73720 -9.84604 -9.47259 -9.08546 -9.05335 -8.98361 -8.79069 -8.26573 -6.52093 -6.23055 -3.93984 1.10646 2.29860 2.38489 2.96883 3.03786 3.22235 3.25875 3.28872 3.58613 3.65270 3.80117 4.18845 4.28064 4.41900 4.51552 4.56978 4.70804 4.77569 4.79072 4.88051 4.98403 5.02565 5.09573 5.11978 5.27652 5.30623 5.35889 5.41119 5.44531 5.49567 5.50363 5.51900 5.60289 5.66469 5.75465 5.79180 5.79637 5.84904 5.95040 6.09679 6.10927 6.44836 6.49185 6.82864 7.49337 7.55745 7.58137 8.33369 8.53563 9.22031 10.84344 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009436 B = 0.002490 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2966.688905 B =11242.703081 C =13841.721910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.028 4.028 3 C 0.199 3.801 4 N -0.483 5.483 5 C 0.012 3.988 6 C -0.072 4.072 7 C -0.058 4.058 8 C 0.149 3.851 9 N -0.682 5.682 10 C 0.074 3.926 11 H 0.054 0.946 12 C -0.139 4.139 13 C 0.118 3.882 14 N -0.744 5.744 15 C 0.534 3.466 16 O -0.513 6.513 17 C -0.154 4.154 18 S -0.058 6.058 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.282 1.282 26 H -0.274 1.274 27 O -0.200 6.200 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.051 0.949 38 H 0.349 0.651 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.392 0.608 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.757 9.555 18.527 28.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.066 4.066 3 C -0.008 4.008 4 N -0.213 5.213 5 C -0.109 4.109 6 C -0.130 4.130 7 C -0.111 4.111 8 C 0.020 3.980 9 N -0.317 5.317 10 C -0.035 4.035 11 H 0.072 0.928 12 C -0.197 4.197 13 C -0.006 4.006 14 N -0.400 5.400 15 C 0.320 3.680 16 O -0.387 6.387 17 C -0.305 4.305 18 S 0.168 5.832 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 O -0.087 6.087 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.113 0.887 32 H 0.125 0.875 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.124 0.876 37 H 0.069 0.931 38 H 0.170 0.830 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.226 0.774 45 H 0.108 0.892 46 H 0.107 0.893 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.621 10.506 19.450 28.270 hybrid contribution -2.392 -1.930 -1.949 3.640 sum -20.013 8.576 17.501 27.935 Atomic orbital electron populations 1.21776 0.93061 1.03069 1.02832 1.20097 0.96838 0.84248 1.05455 1.26253 0.99351 0.96628 0.78596 1.70373 1.16994 1.03628 1.30273 1.21507 1.02693 0.94595 0.92075 1.20150 1.01443 0.93269 0.98090 1.22918 1.06646 0.86511 0.94977 1.20299 0.88665 0.92379 0.96676 1.60573 1.13988 1.06594 1.50553 1.21827 0.96397 0.92160 0.93149 0.92757 1.21751 1.02408 0.95679 0.99881 1.21518 0.97034 0.87075 0.94986 1.46063 1.15859 1.27333 1.50703 1.20294 0.83870 0.85515 0.78341 1.90712 1.23165 1.62729 1.62066 1.23537 1.07742 0.96717 1.02505 1.85402 1.10295 1.30792 1.56666 1.22822 1.01321 1.10614 1.33741 0.91000 1.24994 0.94584 0.98160 0.95821 1.70005 1.05600 1.38820 1.35834 0.86222 0.78433 0.81673 0.79163 1.19948 1.20777 1.19920 1.84374 1.64078 1.22455 1.37799 0.92190 0.90773 0.91840 0.88659 0.87545 0.91046 0.90654 0.89931 0.87554 0.93109 0.83032 0.91824 0.92322 0.91291 0.90610 0.90452 0.77390 0.89237 0.89284 0.92096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.89 37.15 0.37 -0.49 16 2 C -0.03 -0.20 6.56 -27.89 -0.18 -0.38 16 3 C 0.20 2.12 7.60 -12.95 -0.10 2.02 16 4 N -0.48 -5.80 11.29 -7.35 -0.08 -5.88 16 5 C 0.01 0.13 7.11 -82.81 -0.59 -0.46 16 6 C -0.07 -0.56 10.05 36.01 0.36 -0.20 16 7 C -0.06 -0.59 6.90 -35.69 -0.25 -0.83 16 8 C 0.15 1.12 5.64 -4.97 -0.03 1.10 16 9 N -0.68 -5.77 6.29 -107.99 -0.68 -6.45 16 10 C 0.07 0.58 2.81 -67.72 -0.19 0.39 16 11 H 0.05 0.38 7.80 -51.93 -0.41 -0.02 16 12 C -0.14 -0.90 9.41 37.15 0.35 -0.55 16 13 C 0.12 1.30 5.31 -4.04 -0.02 1.28 16 14 N -0.74 -9.60 4.99 -60.29 -0.30 -9.90 16 15 C 0.53 9.84 7.85 -10.99 -0.09 9.76 16 16 O -0.51 -11.58 15.86 5.55 0.09 -11.49 16 17 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16 18 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 19 C -0.54 -15.28 9.50 30.94 0.29 -14.99 16 20 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.17 13.22 55.49 0.73 -25.43 16 23 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 27 O -0.20 -2.26 10.78 5.37 0.06 -2.20 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.57 7.80 -51.93 -0.40 0.16 16 36 H 0.11 0.62 7.10 -51.93 -0.37 0.26 16 37 H 0.05 0.35 8.06 -51.93 -0.42 -0.06 16 38 H 0.35 3.39 6.71 -39.29 -0.26 3.13 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.31 7.45 -51.93 -0.39 -0.07 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.39 4.07 7.37 -40.82 -0.30 3.77 16 45 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 46 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 47 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 408.40 15.07 6.15 6.15 Total: -1.00 -36.01 408.40 -8.80 -44.81 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -7.59 Total: 2.07 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: 0.06 Total: -4.23 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: -0.33 Total: -47.66 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.15 Total: -13.69 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.01 -8.80 -44.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752860917.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.892 kcal (2) G-P(sol) polarization free energy of solvation -36.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds