Wall clock time and date at job start Sat Apr 11 2020 06:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50701 * 109.47513 * 2 1 4 4 N 1.30256 * 125.61946 * 89.97168 * 3 2 1 5 5 C 1.34476 * 108.69854 * 179.77799 * 4 3 2 6 6 C 1.50705 * 126.16474 * 180.26910 * 5 4 3 7 7 C 1.34332 * 107.66989 * 0.39707 * 5 4 3 8 8 C 1.50697 * 126.44241 * 179.87480 * 7 5 4 9 9 N 1.46905 * 109.47066 * 89.71133 * 8 7 5 10 10 C 1.46901 * 110.99870 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.46917 * 324.99892 * 10 9 8 12 12 C 1.52993 * 109.47269 * 84.99904 * 10 9 8 13 13 C 1.53001 * 109.47087 * 205.00123 * 10 9 8 14 14 N 1.46501 * 109.47296 * 54.99617 * 13 10 9 15 15 C 1.34774 * 120.00299 * 180.02562 * 14 13 10 16 16 O 1.21285 * 119.99737 * 0.02562 * 15 14 13 17 17 C 1.50696 * 120.00101 * 180.02562 * 15 14 13 18 18 S 1.81002 * 109.46940 * 179.97438 * 17 15 14 19 19 C 1.76202 * 99.99869 * 179.97438 * 18 17 15 20 20 H 1.07998 * 120.00267 * 0.02562 * 19 18 17 21 21 C 1.38804 * 119.99969 * 179.97438 * 19 18 17 22 22 N 1.31629 * 119.99809 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00018 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46877 * 60.00478 * 23 21 19 25 25 H 1.48501 * 109.47027 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47221 * 300.00499 * 23 21 19 27 27 O 1.33963 * 125.61710 * 270.00169 * 3 2 1 28 28 H 1.09002 * 109.47108 * 60.00207 * 1 2 3 29 29 H 1.09001 * 109.47439 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47303 * 300.00593 * 1 2 3 31 31 H 1.09002 * 109.47431 * 239.99848 * 2 1 3 32 32 H 1.09003 * 109.47205 * 120.00333 * 2 1 3 33 33 H 1.09004 * 109.47091 * 270.15081 * 6 5 4 34 34 H 1.09004 * 109.47053 * 30.14702 * 6 5 4 35 35 H 1.09000 * 109.46937 * 150.15151 * 6 5 4 36 36 H 1.09001 * 109.47558 * 329.71297 * 8 7 5 37 37 H 1.08998 * 109.47216 * 209.70959 * 8 7 5 38 38 H 1.00901 * 110.99869 * 56.04737 * 9 8 7 39 39 H 1.09006 * 109.47343 * 180.02562 * 12 10 9 40 40 H 1.09004 * 109.47587 * 300.00069 * 12 10 9 41 41 H 1.09000 * 109.47161 * 60.00137 * 12 10 9 42 42 H 1.08992 * 109.47393 * 174.99979 * 13 10 9 43 43 H 1.09007 * 109.46815 * 294.99989 * 13 10 9 44 44 H 0.97008 * 119.99646 * 0.02562 * 14 13 10 45 45 H 1.08996 * 109.47568 * 299.99754 * 17 15 14 46 46 H 1.08997 * 109.47105 * 60.00176 * 17 15 14 47 47 H 0.96996 * 119.99783 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2848 2.1362 1.0589 5 6 2.7186 3.3474 0.6675 6 6 3.1269 4.4810 1.5726 7 6 2.7196 3.3657 -0.6757 8 6 3.1279 4.5195 -1.5549 9 7 4.5663 4.4326 -1.8403 10 6 5.0013 5.5442 -2.6966 11 1 4.2070 5.7929 -3.4004 12 6 5.3140 6.7645 -1.8284 13 6 6.2563 5.1324 -3.4686 14 7 5.9915 3.8951 -4.2071 15 6 6.9599 3.3410 -4.9631 16 8 8.0509 3.8664 -5.0316 17 6 6.6872 2.0686 -5.7231 18 16 8.1721 1.5814 -6.6364 19 6 7.5870 0.1098 -7.4089 20 1 6.5738 -0.2231 -7.2391 21 6 8.4281 -0.6211 -8.2365 22 7 9.6630 -0.2151 -8.4438 23 14 7.8077 -2.1808 -9.0560 24 1 6.6457 -1.8564 -9.9219 25 1 8.8916 -2.7708 -9.8820 26 1 7.3927 -3.1555 -8.0153 27 8 2.2924 2.1563 -1.0890 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.2575 5.0998 1.7948 34 1 3.5321 4.0772 2.5005 35 1 3.8864 5.0860 1.0773 36 1 2.9149 5.4586 -1.0443 37 1 2.5690 4.4794 -2.4899 38 1 4.7995 3.5431 -2.2557 39 1 5.6363 7.5895 -2.4638 40 1 4.4198 7.0580 -1.2784 41 1 6.1082 6.5158 -1.1246 42 1 6.5278 5.9223 -4.1688 43 1 7.0762 4.9694 -2.7689 44 1 5.1190 3.4747 -4.1519 45 1 6.4151 1.2785 -5.0233 46 1 5.8679 2.2321 -6.4231 47 1 10.2506 -0.7257 -9.0225 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752860917.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:57 Heat of formation + Delta-G solvation = -55.952597 kcal Electronic energy + Delta-G solvation = -26682.140115 eV Core-core repulsion = 22798.245435 eV Total energy + Delta-G solvation = -3883.894680 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.37767 -40.80987 -38.64665 -36.20902 -35.71842 -34.84306 -34.59453 -33.00615 -31.31158 -30.72475 -28.55029 -27.75281 -26.93826 -26.11507 -24.02941 -22.57757 -21.87408 -21.70839 -21.45387 -19.88712 -18.18474 -17.91529 -17.69142 -17.32153 -17.06019 -16.89055 -16.55040 -16.08755 -15.89757 -15.78883 -15.42035 -14.82596 -14.68144 -14.48167 -14.21743 -14.14291 -14.04071 -13.69768 -13.56648 -13.49031 -13.26725 -13.18697 -13.05742 -12.90945 -12.87045 -12.65054 -12.62114 -12.57198 -12.09553 -11.96284 -11.88851 -11.74605 -11.51523 -11.14125 -11.02221 -10.30587 -10.21740 -9.70702 -9.47713 -8.68666 -8.35764 -6.14290 0.36119 1.24621 1.43082 1.45197 1.54760 1.55586 1.58395 1.66119 2.19983 2.26599 2.96294 2.98296 3.10436 3.29938 3.60116 3.71243 3.86368 3.91558 4.03682 4.14667 4.20593 4.22268 4.24725 4.27931 4.37228 4.46346 4.51525 4.61958 4.70359 4.75920 4.83091 4.86092 4.92693 4.94186 4.95955 5.03849 5.08442 5.10001 5.26049 5.29875 5.40144 5.43866 5.46516 5.84272 6.10257 6.18234 6.35619 6.73301 7.05291 7.15556 8.73239 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009436 B = 0.002490 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2966.688905 B =11242.703081 C =13841.721910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.030 4.030 3 C 0.190 3.810 4 N -0.513 5.513 5 C -0.008 4.008 6 C -0.068 4.068 7 C -0.065 4.065 8 C 0.153 3.847 9 N -0.688 5.688 10 C 0.086 3.914 11 H 0.073 0.927 12 C -0.137 4.137 13 C 0.117 3.883 14 N -0.717 5.717 15 C 0.536 3.464 16 O -0.561 6.561 17 C -0.131 4.131 18 S -0.149 6.149 19 C -0.548 4.548 20 H 0.082 0.918 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.998 3.002 24 H -0.262 1.262 25 H -0.279 1.279 26 H -0.262 1.262 27 O -0.213 6.213 28 H 0.054 0.946 29 H 0.094 0.906 30 H 0.054 0.946 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.127 0.873 37 H 0.062 0.938 38 H 0.340 0.660 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.058 0.942 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.409 0.591 45 H 0.107 0.893 46 H 0.110 0.890 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.405 9.469 18.829 30.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.068 4.068 3 C -0.017 4.017 4 N -0.243 5.243 5 C -0.128 4.128 6 C -0.125 4.125 7 C -0.118 4.118 8 C 0.024 3.976 9 N -0.323 5.323 10 C -0.023 4.023 11 H 0.090 0.910 12 C -0.195 4.195 13 C -0.007 4.007 14 N -0.372 5.372 15 C 0.322 3.678 16 O -0.439 6.439 17 C -0.282 4.282 18 S 0.078 5.922 19 C -0.696 4.696 20 H 0.101 0.899 21 C -0.191 4.191 22 N -0.547 5.547 23 Si 0.820 3.180 24 H -0.186 1.186 25 H -0.204 1.204 26 H -0.187 1.187 27 O -0.101 6.101 28 H 0.074 0.926 29 H 0.113 0.887 30 H 0.073 0.927 31 H 0.125 0.875 32 H 0.132 0.868 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.145 0.855 37 H 0.080 0.920 38 H 0.160 0.840 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.077 0.923 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.245 0.755 45 H 0.126 0.874 46 H 0.128 0.872 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.329 10.447 19.790 30.234 hybrid contribution -1.637 -1.828 -1.930 3.122 sum -21.966 8.619 17.860 29.594 Atomic orbital electron populations 1.21742 0.92052 1.04184 1.02141 1.20314 0.97610 0.82518 1.06325 1.26987 0.98776 0.97615 0.78296 1.70376 1.18137 1.04606 1.31184 1.22022 1.02861 0.94953 0.92988 1.20210 1.02306 0.92664 0.97370 1.23387 1.06372 0.86721 0.95304 1.20438 0.87964 0.92170 0.96988 1.60601 1.14805 1.06223 1.50659 1.21778 0.94988 0.92248 0.93260 0.90953 1.21754 1.02954 0.95101 0.99688 1.21673 0.98573 0.85760 0.94659 1.45783 1.15289 1.27395 1.48684 1.20023 0.84060 0.85009 0.78737 1.90702 1.25291 1.63890 1.64028 1.23377 1.04183 0.98148 1.02521 1.85575 1.16236 1.31769 1.58600 1.23167 1.01834 1.10688 1.33880 0.89943 1.26138 0.94629 1.02012 0.96369 1.70174 1.07181 1.40588 1.36787 0.85006 0.78070 0.76751 0.78186 1.18606 1.20369 1.18655 1.84373 1.64370 1.23067 1.38245 0.92639 0.88727 0.92707 0.87550 0.86836 0.89506 0.91302 0.88880 0.85471 0.92022 0.84020 0.91077 0.90497 0.92323 0.90761 0.91975 0.75455 0.87443 0.87210 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.89 71.98 0.71 -0.75 16 2 C -0.03 -0.39 6.56 29.85 0.20 -0.19 16 3 C 0.19 3.95 7.60 88.34 0.67 4.62 16 4 N -0.51 -12.15 11.29 -291.98 -3.30 -15.45 16 5 C -0.01 -0.16 7.11 41.26 0.29 0.13 16 6 C -0.07 -0.97 10.05 71.24 0.72 -0.25 16 7 C -0.07 -1.24 6.90 24.79 0.17 -1.07 16 8 C 0.15 1.89 5.64 85.55 0.48 2.38 16 9 N -0.69 -10.03 6.29 -495.58 -3.12 -13.15 16 10 C 0.09 1.11 2.81 44.91 0.13 1.23 16 11 H 0.07 0.73 7.80 -2.39 -0.02 0.71 16 12 C -0.14 -1.40 9.41 71.98 0.68 -0.72 16 13 C 0.12 2.41 5.31 86.38 0.46 2.87 16 14 N -0.72 -17.31 4.99 -463.06 -2.31 -19.62 16 15 C 0.54 19.50 7.85 87.66 0.69 20.19 16 16 O -0.56 -25.84 15.86 -3.04 -0.05 -25.89 16 17 C -0.13 -5.17 6.16 71.23 0.44 -4.73 16 18 S -0.15 -8.28 20.57 -56.49 -1.16 -9.44 16 19 C -0.55 -31.27 9.50 67.96 0.65 -30.62 16 20 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 21 C 0.01 0.76 5.49 84.86 0.47 1.23 16 22 N -0.91 -56.02 13.22 21.65 0.29 -55.74 16 23 Si 1.00 43.43 29.55 68.60 2.03 45.46 16 24 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 25 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 26 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 27 O -0.21 -4.61 10.78 -3.70 -0.04 -4.65 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.09 1.08 7.80 -2.39 -0.02 1.06 16 36 H 0.13 1.04 7.10 -2.39 -0.02 1.02 16 37 H 0.06 0.65 8.06 -2.39 -0.02 0.64 16 38 H 0.34 5.92 6.71 -89.69 -0.60 5.32 16 39 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 40 H 0.08 0.54 7.45 -2.39 -0.02 0.52 16 41 H 0.06 0.74 8.14 -2.39 -0.02 0.73 16 42 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 44 H 0.41 7.42 7.37 -92.70 -0.68 6.73 16 45 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 46 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 47 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -80.92 408.40 -1.22 -82.14 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: -0.30 Total: 22.02 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: 6.74 Total: -5.69 kcal Atomic # 7 Polarization: -95.52 SS G_CDS: -8.44 Total: -103.96 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.09 Total: -30.54 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: -8.28 SS G_CDS: -1.16 Total: -9.44 kcal Total: -80.92 -1.22 -82.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752860917.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.190 kcal (2) G-P(sol) polarization free energy of solvation -80.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds