Wall clock time and date at job start Sat Apr 11 2020 06:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.47289 * 2 1 4 4 N 1.30171 * 126.80364 * 269.98150 * 3 2 1 5 5 O 1.20925 * 111.60547 * 180.02562 * 4 3 2 6 6 C 1.34049 * 111.56289 * 359.76003 * 5 4 3 7 7 C 1.50702 * 126.77268 * 180.28834 * 6 5 4 8 8 C 1.35448 * 106.44546 * 0.37973 * 6 5 4 9 9 C 1.50704 * 128.00333 * 179.91492 * 8 6 5 10 10 N 1.46900 * 109.46782 * 269.67675 * 9 8 6 11 11 C 1.46898 * 110.99922 * 179.97438 * 10 9 8 12 12 H 1.09001 * 109.47392 * 325.00592 * 11 10 9 13 13 C 1.53006 * 109.47006 * 85.00294 * 11 10 9 14 14 C 1.52999 * 109.47548 * 204.99872 * 11 10 9 15 15 N 1.46504 * 109.46795 * 55.00094 * 14 11 10 16 16 C 1.34774 * 120.00039 * 180.02562 * 15 14 11 17 17 O 1.21287 * 120.00216 * 0.02562 * 16 15 14 18 18 C 1.50700 * 120.00355 * 179.97438 * 16 15 14 19 19 S 1.80994 * 109.47495 * 179.97438 * 18 16 15 20 20 C 1.76205 * 100.00225 * 180.02562 * 19 18 16 21 21 H 1.07997 * 119.99759 * 0.02562 * 20 19 18 22 22 C 1.38794 * 120.00314 * 180.02562 * 20 19 18 23 23 N 1.31634 * 119.99653 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00362 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46951 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47238 * 119.99540 * 24 22 20 27 27 H 1.48494 * 109.47466 * 239.99937 * 24 22 20 28 28 H 1.09003 * 109.46860 * 59.99569 * 1 2 3 29 29 H 1.08995 * 109.47115 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47122 * 299.99866 * 1 2 3 31 31 H 1.08998 * 109.47395 * 240.00592 * 2 1 3 32 32 H 1.08994 * 109.47459 * 120.00374 * 2 1 3 33 33 H 1.09000 * 109.47202 * 270.10889 * 7 6 5 34 34 H 1.08996 * 109.47074 * 30.11067 * 7 6 5 35 35 H 1.09005 * 109.46783 * 150.11404 * 7 6 5 36 36 H 1.08996 * 109.47076 * 149.68259 * 9 8 6 37 37 H 1.09003 * 109.47176 * 29.67568 * 9 8 6 38 38 H 1.00899 * 111.00419 * 56.04820 * 10 9 8 39 39 H 1.09001 * 109.47002 * 299.99782 * 13 11 10 40 40 H 1.08993 * 109.46955 * 60.00219 * 13 11 10 41 41 H 1.09000 * 109.47050 * 180.02562 * 13 11 10 42 42 H 1.08997 * 109.47756 * 174.99762 * 14 11 10 43 43 H 1.09001 * 109.47317 * 295.00645 * 14 11 10 44 44 H 0.97002 * 120.00414 * 359.97438 * 15 14 11 45 45 H 1.08999 * 109.47131 * 300.00410 * 18 16 15 46 46 H 1.09005 * 109.46978 * 60.00111 * 18 16 15 47 47 H 0.97005 * 120.00088 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2927 2.1559 -1.0423 5 8 2.6821 3.2560 -0.7253 6 6 2.7267 3.3979 0.6070 7 6 3.1531 4.6257 1.3697 8 6 2.3148 2.2192 1.1321 9 6 2.1821 1.8472 2.5865 10 7 3.4444 1.2635 3.0597 11 6 3.3523 0.8885 4.4770 12 1 2.7245 1.6077 5.0031 13 6 2.7381 -0.5078 4.5962 14 6 4.7517 0.8845 5.0955 15 7 5.3864 2.1865 4.8759 16 6 6.6320 2.4153 5.3367 17 8 7.2278 1.5431 5.9329 18 6 7.2852 3.7543 5.1103 19 16 8.9406 3.7497 5.8421 20 6 9.4567 5.3863 5.4419 21 1 8.7944 6.0435 4.8981 22 6 10.7144 5.8307 5.8254 23 7 11.5214 5.0297 6.4886 24 14 11.2613 7.5658 5.4017 25 1 10.1781 8.2587 4.6588 26 1 11.5592 8.3101 6.6517 27 1 12.4814 7.5081 4.5573 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 4.2263 4.5835 1.5556 34 1 2.9202 5.5156 0.7851 35 1 2.6210 4.6658 2.3203 36 1 1.3790 1.1197 2.7036 37 1 1.9528 2.7388 3.1701 38 1 4.2160 1.8944 2.9023 39 1 1.7411 -0.5050 4.1556 40 1 3.3659 -1.2269 4.0701 41 1 2.6694 -0.7859 5.6479 42 1 4.6754 0.6935 6.1659 43 1 5.3529 0.1040 4.6292 44 1 4.9104 2.8837 4.3981 45 1 7.3613 3.9451 4.0398 46 1 6.6844 4.5352 5.5767 47 1 12.4003 5.3404 6.7571 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752860945.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:03 Heat of formation + Delta-G solvation = -16.383908 kcal Electronic energy + Delta-G solvation = -27081.175101 eV Core-core repulsion = 23198.996248 eV Total energy + Delta-G solvation = -3882.178853 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.89092 -40.75724 -38.71313 -36.70695 -35.30761 -34.57202 -34.35064 -32.40035 -31.80436 -30.69613 -28.79526 -27.73059 -27.07683 -26.22184 -25.09866 -22.34522 -21.81048 -21.63050 -20.80559 -19.85338 -18.62815 -18.25438 -17.75070 -17.36363 -17.03202 -16.86815 -16.37476 -15.99485 -15.86554 -15.56507 -15.44113 -14.87630 -14.61534 -14.47813 -14.24474 -14.13027 -13.98892 -13.73397 -13.52989 -13.42979 -13.25999 -13.14366 -13.04317 -12.90519 -12.81780 -12.56739 -12.52122 -12.40766 -12.33040 -11.92898 -11.69394 -11.62866 -11.14813 -10.96715 -10.86597 -10.24635 -10.18015 -10.12955 -9.41915 -8.64938 -8.33558 -6.11095 0.50767 1.21924 1.28432 1.42418 1.48737 1.58992 1.61944 2.22792 2.24859 2.29673 3.01001 3.12362 3.29642 3.34752 3.52698 3.70340 3.84643 3.98355 4.01586 4.21578 4.24281 4.31914 4.36175 4.36882 4.43670 4.51527 4.52561 4.64061 4.67259 4.69297 4.78033 4.85240 4.89522 4.99113 5.00764 5.03722 5.07909 5.12622 5.25148 5.34548 5.34890 5.43859 5.49187 6.00899 6.21476 6.29764 6.44110 7.08243 7.22782 7.34393 8.75788 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013031 B = 0.002376 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.231125 B =11781.589794 C =13496.131364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.047 4.047 3 C 0.034 3.966 4 N -0.405 5.405 5 O 0.074 5.926 6 C -0.024 4.024 7 C -0.082 4.082 8 C -0.206 4.206 9 C 0.143 3.857 10 N -0.690 5.690 11 C 0.087 3.913 12 H 0.072 0.928 13 C -0.137 4.137 14 C 0.118 3.882 15 N -0.714 5.714 16 C 0.535 3.465 17 O -0.564 6.564 18 C -0.129 4.129 19 S -0.155 6.155 20 C -0.542 4.542 21 H 0.085 0.915 22 C 0.011 3.989 23 N -0.912 5.912 24 Si 0.998 3.002 25 H -0.254 1.254 26 H -0.275 1.275 27 H -0.276 1.276 28 H 0.042 0.958 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.341 0.659 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.411 0.589 45 H 0.111 0.889 46 H 0.113 0.887 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.823 -5.014 -9.658 29.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.085 4.085 3 C -0.126 4.126 4 N -0.114 5.114 5 O 0.014 5.986 6 C -0.088 4.088 7 C -0.139 4.139 8 C -0.210 4.210 9 C 0.014 3.986 10 N -0.324 5.324 11 C -0.022 4.022 12 H 0.090 0.910 13 C -0.195 4.195 14 C -0.006 4.006 15 N -0.369 5.369 16 C 0.321 3.679 17 O -0.442 6.442 18 C -0.280 4.280 19 S 0.072 5.928 20 C -0.690 4.690 21 H 0.103 0.897 22 C -0.193 4.193 23 N -0.549 5.549 24 Si 0.820 3.180 25 H -0.178 1.178 26 H -0.200 1.200 27 H -0.202 1.202 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.112 0.888 35 H 0.130 0.870 36 H 0.115 0.885 37 H 0.084 0.916 38 H 0.161 0.839 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.077 0.923 44 H 0.248 0.752 45 H 0.129 0.871 46 H 0.131 0.869 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -26.916 -7.306 -10.135 29.674 hybrid contribution 0.101 2.762 -0.079 2.765 sum -26.815 -4.544 -10.214 29.052 Atomic orbital electron populations 1.21677 0.92892 1.03250 1.01859 1.20039 0.97058 0.87134 1.04229 1.23878 1.00470 0.99759 0.88462 1.73842 1.18663 0.93540 1.25402 1.84779 1.63192 1.26840 1.23839 1.24987 1.00580 0.99895 0.83333 1.20624 1.03559 0.90587 0.99098 1.21015 1.09051 0.93045 0.97894 1.20212 0.92749 0.99200 0.86422 1.60526 1.05515 1.48441 1.17929 1.21720 0.93701 0.99475 0.87303 0.90972 1.21738 1.01167 0.94410 1.02196 1.21634 0.93484 0.84494 1.00985 1.45721 1.15236 1.16856 1.59052 1.20072 0.81697 0.88432 0.77750 1.90709 1.64220 1.47196 1.42104 1.23367 1.00641 0.97933 1.06064 1.85648 1.11927 1.20441 1.74766 1.23229 1.04384 0.98851 1.42502 0.89699 1.26131 0.95559 1.03345 0.94292 1.70196 1.09087 1.38108 1.37491 0.84913 0.78422 0.76486 0.78188 1.17781 1.20044 1.20196 0.93914 0.89963 0.91758 0.91002 0.88036 0.88346 0.88766 0.86987 0.88545 0.91646 0.83919 0.90888 0.92654 0.91368 0.91131 0.92331 0.75187 0.87085 0.86917 0.92081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.89 71.98 0.71 -0.80 16 2 C -0.05 -0.67 6.44 29.85 0.19 -0.48 16 3 C 0.03 0.65 6.58 43.58 0.29 0.94 16 4 N -0.41 -9.81 12.07 -49.55 -0.60 -10.41 16 5 O 0.07 1.64 11.20 71.54 0.80 2.44 16 6 C -0.02 -0.37 7.49 25.04 0.19 -0.18 16 7 C -0.08 -0.66 10.30 71.24 0.73 0.08 16 8 C -0.21 -3.16 5.83 -19.73 -0.12 -3.27 16 9 C 0.14 1.42 5.81 85.56 0.50 1.92 16 10 N -0.69 -8.63 6.29 -495.56 -3.12 -11.75 16 11 C 0.09 1.02 2.81 44.92 0.13 1.15 16 12 H 0.07 0.62 7.80 -2.39 -0.02 0.60 16 13 C -0.14 -1.42 9.41 71.98 0.68 -0.74 16 14 C 0.12 2.28 5.31 86.38 0.46 2.74 16 15 N -0.71 -15.45 4.99 -463.05 -2.31 -17.76 16 16 C 0.53 18.35 7.85 87.66 0.69 19.04 16 17 O -0.56 -25.26 15.86 -3.05 -0.05 -25.31 16 18 C -0.13 -4.75 6.16 71.24 0.44 -4.31 16 19 S -0.15 -8.39 20.57 -56.49 -1.16 -9.55 16 20 C -0.54 -30.12 9.50 67.95 0.65 -29.47 16 21 H 0.08 4.34 7.80 -2.91 -0.02 4.31 16 22 C 0.01 0.63 5.49 84.86 0.47 1.10 16 23 N -0.91 -55.52 13.22 21.65 0.29 -55.23 16 24 Si 1.00 42.82 29.55 68.60 2.03 44.85 16 25 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 26 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 27 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 28 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.11 0.41 7.43 -2.38 -0.02 0.39 16 36 H 0.10 0.82 7.44 -2.39 -0.02 0.80 16 37 H 0.07 0.41 7.35 -2.39 -0.02 0.39 16 38 H 0.34 4.72 6.70 -89.69 -0.60 4.12 16 39 H 0.07 0.57 7.45 -2.39 -0.02 0.55 16 40 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.41 5.85 7.37 -92.71 -0.68 5.17 16 45 H 0.11 3.63 8.14 -2.40 -0.02 3.61 16 46 H 0.11 3.63 8.14 -2.39 -0.02 3.62 16 47 H 0.27 15.26 8.31 -92.70 -0.77 14.49 16 Total: -1.00 -80.05 407.46 1.57 -78.48 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -0.30 Total: 16.56 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: 6.00 Total: -12.31 kcal Atomic # 7 Polarization: -89.41 SS G_CDS: -5.74 Total: -95.15 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: 0.75 Total: -22.87 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.16 Total: -9.55 kcal Total: -80.05 1.57 -78.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752860945.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.096 kcal (2) G-P(sol) polarization free energy of solvation -80.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds