Wall clock time and date at job start Sat Apr 11 2020 06:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50704 * 109.46579 * 2 1 4 4 N 1.30171 * 126.79962 * 269.96631 * 3 2 1 5 5 O 1.20919 * 111.60315 * 180.02562 * 4 3 2 6 6 C 1.34042 * 111.56617 * 359.77125 * 5 4 3 7 7 C 1.50707 * 126.77340 * 180.28551 * 6 5 4 8 8 C 1.35440 * 106.44775 * 0.37393 * 6 5 4 9 9 C 1.50701 * 128.00811 * 179.91442 * 8 6 5 10 10 N 1.46901 * 109.46921 * 269.67819 * 9 8 6 11 11 C 1.46906 * 110.99793 * 179.97438 * 10 9 8 12 12 H 1.09003 * 109.46871 * 35.00433 * 11 10 9 13 13 C 1.52994 * 109.47113 * 275.00325 * 11 10 9 14 14 C 1.53002 * 109.47092 * 155.00227 * 11 10 9 15 15 N 1.46504 * 109.47066 * 304.99917 * 14 11 10 16 16 C 1.34771 * 120.00168 * 179.97438 * 15 14 11 17 17 O 1.21289 * 119.99722 * 359.97438 * 16 15 14 18 18 C 1.50695 * 119.99997 * 180.02562 * 16 15 14 19 19 S 1.81008 * 109.47015 * 180.02562 * 18 16 15 20 20 C 1.76201 * 100.00155 * 179.97438 * 19 18 16 21 21 H 1.08006 * 119.99878 * 0.02562 * 20 19 18 22 22 C 1.38795 * 120.00190 * 179.97438 * 20 19 18 23 23 N 1.31638 * 119.99903 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00191 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46933 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46971 * 120.00377 * 24 22 20 27 27 H 1.48499 * 109.47488 * 240.00540 * 24 22 20 28 28 H 1.09002 * 109.47326 * 299.99681 * 1 2 3 29 29 H 1.08998 * 109.47380 * 60.00630 * 1 2 3 30 30 H 1.09008 * 109.46775 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47238 * 239.99622 * 2 1 3 32 32 H 1.08999 * 109.46872 * 119.99480 * 2 1 3 33 33 H 1.09001 * 109.46670 * 270.11056 * 7 6 5 34 34 H 1.08996 * 109.47311 * 30.10675 * 7 6 5 35 35 H 1.08996 * 109.46716 * 150.11108 * 7 6 5 36 36 H 1.09002 * 109.47060 * 29.68000 * 9 8 6 37 37 H 1.09001 * 109.47380 * 149.68088 * 9 8 6 38 38 H 1.00898 * 110.99877 * 56.04636 * 10 9 8 39 39 H 1.08995 * 109.47731 * 59.99955 * 13 11 10 40 40 H 1.08996 * 109.47268 * 180.02562 * 13 11 10 41 41 H 1.09003 * 109.47340 * 299.99821 * 13 11 10 42 42 H 1.09000 * 109.46986 * 65.00067 * 14 11 10 43 43 H 1.08994 * 109.46981 * 185.00297 * 14 11 10 44 44 H 0.97000 * 119.99510 * 0.02562 * 15 14 11 45 45 H 1.09000 * 109.47328 * 299.99894 * 18 16 15 46 46 H 1.08997 * 109.47563 * 60.00601 * 18 16 15 47 47 H 0.96996 * 120.00141 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2927 2.1559 -1.0423 5 8 2.6818 3.2560 -0.7254 6 6 2.7264 3.3980 0.6068 7 6 3.1526 4.6260 1.3695 8 6 2.3146 2.2194 1.1320 9 6 2.1819 1.8476 2.5864 10 7 3.4441 1.2640 3.0597 11 6 3.3519 0.8891 4.4771 12 1 2.3439 0.5358 4.6946 13 6 3.6645 2.1073 5.3483 14 6 4.3582 -0.2239 4.7768 15 7 4.1340 -1.3447 3.8603 16 6 4.9085 -2.4448 3.9390 17 8 5.7914 -2.5068 4.7683 18 6 4.6783 -3.5974 2.9959 19 16 5.8686 -4.9141 3.3505 20 6 5.3847 -6.0985 2.1389 21 1 4.5668 -5.8812 1.4678 22 6 6.0553 -7.3101 2.0462 23 7 7.0525 -7.5747 2.8638 24 14 5.5419 -8.5660 0.7623 25 1 4.4029 -8.0306 -0.0260 26 1 6.6848 -8.8421 -0.1448 27 1 5.1301 -9.8234 1.4365 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 4.2258 4.5838 1.5553 34 1 2.9197 5.5159 0.7847 35 1 2.6205 4.6661 2.3199 36 1 1.9523 2.7392 3.1699 37 1 1.3787 1.1199 2.7036 38 1 4.2156 1.8949 2.9024 39 1 2.9477 2.9002 5.1349 40 1 3.5965 1.8291 6.3999 41 1 4.6725 2.4606 5.1308 42 1 5.3709 0.1567 4.6445 43 1 4.2289 -0.5635 5.8044 44 1 3.4286 -1.2946 3.1964 45 1 3.6656 -3.9783 3.1281 46 1 4.8074 -3.2575 1.9683 47 1 7.5209 -8.4216 2.7993 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752860946.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:05 Heat of formation + Delta-G solvation = -20.519045 kcal Electronic energy + Delta-G solvation = -27176.935355 eV Core-core repulsion = 23294.577190 eV Total energy + Delta-G solvation = -3882.358166 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.88632 -40.56975 -38.67333 -36.65534 -35.32789 -34.57628 -34.32138 -32.35820 -31.73948 -30.60331 -28.67997 -27.72130 -26.89589 -26.26081 -25.09190 -22.32795 -21.98906 -21.55197 -20.77987 -19.78331 -18.63277 -18.08409 -17.66282 -17.30365 -16.87605 -16.86906 -16.23724 -16.00883 -15.77086 -15.54894 -15.27425 -14.91116 -14.59093 -14.40343 -14.19546 -14.15947 -13.97130 -13.73166 -13.62087 -13.42868 -13.18154 -13.14486 -13.10121 -12.94561 -12.90209 -12.58794 -12.47416 -12.36568 -12.29184 -11.85900 -11.69576 -11.67301 -11.14990 -10.88544 -10.84234 -10.25139 -10.13738 -9.95495 -9.34149 -8.64611 -8.33862 -6.11210 0.54228 1.24022 1.29235 1.41406 1.48672 1.60138 1.70818 2.27047 2.27736 2.42262 3.00153 3.16375 3.33057 3.38069 3.54747 3.83387 3.92069 4.01382 4.11674 4.19648 4.25226 4.33454 4.36480 4.39328 4.44644 4.52888 4.54343 4.65554 4.70480 4.71485 4.81230 4.85749 4.87858 4.98473 5.02278 5.03950 5.07208 5.12341 5.26137 5.32522 5.36374 5.43075 5.57875 6.04459 6.21173 6.42372 6.66009 7.07613 7.36783 7.38300 8.75668 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011126 B = 0.002581 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.054781 B =10844.871342 C =12638.902138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.050 4.050 3 C 0.031 3.969 4 N -0.407 5.407 5 O 0.077 5.923 6 C -0.025 4.025 7 C -0.074 4.074 8 C -0.202 4.202 9 C 0.145 3.855 10 N -0.689 5.689 11 C 0.087 3.913 12 H 0.100 0.900 13 C -0.175 4.175 14 C 0.130 3.870 15 N -0.697 5.697 16 C 0.530 3.470 17 O -0.572 6.572 18 C -0.127 4.127 19 S -0.152 6.152 20 C -0.544 4.544 21 H 0.081 0.919 22 C 0.012 3.988 23 N -0.911 5.911 24 Si 0.998 3.002 25 H -0.257 1.257 26 H -0.275 1.275 27 H -0.273 1.273 28 H 0.067 0.933 29 H 0.042 0.958 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.348 0.652 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.050 0.950 43 H 0.063 0.937 44 H 0.416 0.584 45 H 0.108 0.892 46 H 0.103 0.897 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.223 28.336 -0.120 32.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.088 4.088 3 C -0.128 4.128 4 N -0.116 5.116 5 O 0.015 5.985 6 C -0.090 4.090 7 C -0.131 4.131 8 C -0.206 4.206 9 C 0.017 3.983 10 N -0.321 5.321 11 C -0.023 4.023 12 H 0.118 0.882 13 C -0.234 4.234 14 C 0.006 3.994 15 N -0.349 5.349 16 C 0.315 3.685 17 O -0.452 6.452 18 C -0.279 4.279 19 S 0.075 5.925 20 C -0.691 4.691 21 H 0.099 0.901 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.181 1.181 26 H -0.200 1.200 27 H -0.198 1.198 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.128 0.872 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.167 0.833 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.253 0.747 45 H 0.126 0.874 46 H 0.121 0.879 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.873 27.349 -0.241 31.133 hybrid contribution -0.961 -0.178 -0.950 1.363 sum -15.834 27.171 -1.191 31.471 Atomic orbital electron populations 1.21671 0.92957 1.03074 1.01957 1.20034 0.97072 0.87574 1.04134 1.23818 1.00674 0.99527 0.88761 1.73854 1.18644 0.93631 1.25431 1.84769 1.63057 1.26663 1.23996 1.25033 1.00750 0.99955 0.83249 1.20573 1.03510 0.90212 0.98841 1.21016 1.08820 0.92989 0.97824 1.20150 0.92532 0.99428 0.86198 1.60451 1.05634 1.48580 1.17405 1.21696 0.99368 0.93997 0.87281 0.88225 1.22367 1.02655 0.97515 1.00857 1.21459 0.99400 0.85875 0.92711 1.45549 1.36178 1.15178 1.38042 1.20021 0.81233 0.83721 0.83515 1.90680 1.34075 1.81645 1.38778 1.23347 1.04788 0.97406 1.02334 1.85544 1.44968 1.13144 1.48829 1.23226 1.21619 1.03685 1.20618 0.90064 1.26124 0.94396 0.99897 0.98801 1.70193 1.21683 1.24745 1.38195 0.84914 0.78539 0.77184 0.77362 1.18077 1.20025 1.19796 0.91423 0.93839 0.90484 0.91500 0.88030 0.88191 0.88839 0.87175 0.91324 0.89090 0.83339 0.90315 0.91381 0.92064 0.93120 0.91890 0.74727 0.87381 0.87896 0.92022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.89 71.98 0.71 -1.23 16 2 C -0.05 -0.87 6.44 29.85 0.19 -0.68 16 3 C 0.03 0.63 6.58 43.58 0.29 0.92 16 4 N -0.41 -10.03 12.07 -49.57 -0.60 -10.63 16 5 O 0.08 1.61 11.20 71.62 0.80 2.41 16 6 C -0.03 -0.35 7.49 25.04 0.19 -0.16 16 7 C -0.07 -0.32 10.30 71.24 0.73 0.42 16 8 C -0.20 -2.91 5.83 -19.74 -0.12 -3.03 16 9 C 0.15 1.25 5.81 85.56 0.50 1.75 16 10 N -0.69 -7.40 5.68 -495.56 -2.81 -10.21 16 11 C 0.09 0.90 2.75 44.91 0.12 1.02 16 12 H 0.10 0.84 7.80 -2.39 -0.02 0.82 16 13 C -0.17 -1.18 9.16 71.98 0.66 -0.52 16 14 C 0.13 2.60 5.37 86.38 0.46 3.06 16 15 N -0.70 -17.41 5.39 -463.06 -2.50 -19.90 16 16 C 0.53 19.85 7.85 87.66 0.69 20.54 16 17 O -0.57 -26.89 15.86 -3.06 -0.05 -26.94 16 18 C -0.13 -5.18 6.16 71.23 0.44 -4.75 16 19 S -0.15 -8.60 20.57 -56.49 -1.16 -9.76 16 20 C -0.54 -31.53 9.50 67.95 0.65 -30.88 16 21 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 22 C 0.01 0.72 5.49 84.86 0.47 1.18 16 23 N -0.91 -56.66 13.22 21.65 0.29 -56.38 16 24 Si 1.00 44.28 29.55 68.60 2.03 46.30 16 25 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 26 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 27 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.10 0.26 8.14 -2.39 -0.02 0.25 16 34 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 35 H 0.11 0.02 7.43 -2.39 -0.02 0.00 16 36 H 0.07 0.29 6.73 -2.39 -0.02 0.27 16 37 H 0.09 0.75 8.06 -2.39 -0.02 0.73 16 38 H 0.35 3.72 8.46 -89.70 -0.76 2.96 16 39 H 0.08 0.26 7.45 -2.39 -0.02 0.24 16 40 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.06 0.46 8.13 -2.39 -0.02 0.44 16 42 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.42 8.25 8.14 -92.71 -0.75 7.49 16 45 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 46 H 0.10 3.88 8.14 -2.40 -0.02 3.86 16 47 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -82.43 409.51 1.45 -80.98 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -0.53 Total: 16.49 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: 5.98 Total: -12.37 kcal Atomic # 7 Polarization: -91.50 SS G_CDS: -5.62 Total: -97.12 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: 0.75 Total: -24.52 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal Total: -82.43 1.45 -80.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752860946.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.459 kcal (2) G-P(sol) polarization free energy of solvation -82.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds