Wall clock time and date at job start Sat Apr 11 2020 06:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99984 * 2 1 4 4 C 1.50708 * 109.46917 * 179.97438 * 3 2 1 5 5 N 1.29430 * 124.80292 * 89.97508 * 4 3 2 6 6 C 1.30941 * 117.36226 * 180.02562 * 5 4 3 7 7 C 1.35662 * 114.19028 * 359.97438 * 6 5 4 8 8 C 1.46684 * 126.12645 * 180.02562 * 7 6 5 9 9 O 1.21690 * 120.00007 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99721 * 180.02562 * 8 7 6 11 11 C 1.46504 * 120.00111 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.46891 * 325.00262 * 11 10 8 13 13 C 1.52997 * 109.47417 * 204.99914 * 11 10 8 14 14 N 1.46495 * 109.46909 * 55.00401 * 13 11 10 15 15 C 1.36942 * 120.00045 * 179.97438 * 14 13 11 16 16 H 1.07998 * 119.99649 * 359.97438 * 15 14 13 17 17 C 1.38810 * 119.99900 * 179.97438 * 15 14 13 18 18 N 1.31615 * 120.00251 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99778 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47144 * 59.99743 * 19 17 15 21 21 H 1.48500 * 109.46921 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46921 * 299.99796 * 19 17 15 23 23 C 1.53006 * 109.46883 * 84.99828 * 11 10 8 24 24 C 1.52995 * 109.47234 * 295.00505 * 23 11 10 25 25 C 1.52995 * 109.47231 * 174.99953 * 24 23 11 26 26 C 1.53004 * 109.47110 * 295.00004 * 24 23 11 27 27 S 1.70950 * 124.80555 * 270.29199 * 4 3 2 28 28 H 1.09005 * 109.46778 * 60.00522 * 1 2 3 29 29 H 1.09006 * 109.47361 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47414 * 300.00288 * 1 2 3 31 31 H 1.08997 * 109.46844 * 60.00193 * 3 2 1 32 32 H 1.08991 * 109.46862 * 299.99409 * 3 2 1 33 33 H 1.08004 * 122.90020 * 179.97438 * 6 5 4 34 34 H 0.97003 * 120.00265 * 359.97438 * 10 8 7 35 35 H 1.09001 * 109.47096 * 175.00152 * 13 11 10 36 36 H 1.08994 * 109.47065 * 295.00311 * 13 11 10 37 37 H 0.97000 * 120.00271 * 359.97438 * 14 13 11 38 38 H 0.97004 * 119.99979 * 179.97438 * 18 17 15 39 39 H 1.09007 * 109.46744 * 55.00126 * 23 11 10 40 40 H 1.08995 * 109.46794 * 175.00371 * 23 11 10 41 41 H 1.09004 * 109.47589 * 54.99928 * 24 23 11 42 42 H 1.09000 * 109.47521 * 59.99759 * 25 24 23 43 43 H 1.09000 * 109.47310 * 179.97438 * 25 24 23 44 44 H 1.09000 * 109.47291 * 299.99845 * 25 24 23 45 45 H 1.09008 * 109.46605 * 299.99934 * 26 24 23 46 46 H 1.08994 * 109.47413 * 59.99696 * 26 24 23 47 47 H 1.09000 * 109.47077 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.2494 1.1274 -1.0618 6 6 5.5436 1.0244 -0.8917 7 6 5.9329 0.9944 0.4075 8 6 7.3121 0.8855 0.8948 9 8 8.2331 0.8115 0.1029 10 7 7.5592 0.8662 2.2195 11 6 8.9367 0.7568 2.7063 12 1 9.5103 0.1197 2.0331 13 6 8.9350 0.1459 4.1090 14 7 8.2212 -1.1332 4.0836 15 6 8.0909 -1.8675 5.2321 16 1 8.5148 -1.5038 6.1565 17 6 7.4141 -3.0792 5.2081 18 7 6.8972 -3.5221 4.0817 19 14 7.2358 -4.0805 6.7750 20 1 6.5061 -3.2820 7.7924 21 1 6.4780 -5.3241 6.4842 22 1 8.5822 -4.4318 7.2939 23 6 9.5718 2.1479 2.7566 24 6 9.6871 2.7076 1.3374 25 6 10.2058 4.1457 1.3969 26 6 10.6597 1.8478 0.5276 27 16 4.4842 1.1025 1.4047 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.6886 1.8463 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 6.2409 0.9683 -1.7146 34 1 6.8250 0.9248 2.8508 35 1 9.9621 -0.0177 4.4353 36 1 8.4378 0.8257 4.8007 37 1 7.8409 -1.4600 3.2533 38 1 6.4245 -4.3690 4.0649 39 1 8.9493 2.8099 3.3587 40 1 10.5643 2.0782 3.2015 41 1 8.7069 2.6943 0.8607 42 1 11.1860 4.1591 1.8735 43 1 10.2884 4.5443 0.3857 44 1 9.5129 4.7583 1.9738 45 1 11.6399 1.8611 1.0043 46 1 10.2902 0.8232 0.4852 47 1 10.7422 2.2468 -0.4834 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753743247.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:09 Heat of formation + Delta-G solvation = -52.479887 kcal Electronic energy + Delta-G solvation = -27879.864393 eV Core-core repulsion = 23996.120302 eV Total energy + Delta-G solvation = -3883.744092 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.48766 -40.60074 -38.80326 -37.96964 -36.45288 -35.09555 -33.22186 -32.50447 -30.80657 -29.30972 -27.92903 -27.18893 -27.12325 -25.24897 -24.64692 -23.46478 -21.85264 -21.01192 -20.56094 -19.71786 -19.18459 -17.90669 -17.63531 -17.45760 -16.97638 -16.64543 -16.57133 -16.18173 -15.73039 -15.63112 -15.32499 -15.19688 -14.89307 -14.76284 -14.51060 -14.29225 -13.73382 -13.66734 -13.33179 -13.23452 -13.03837 -12.95558 -12.75435 -12.66041 -12.54561 -12.39147 -12.35153 -12.13846 -11.88205 -11.66483 -11.40526 -11.26284 -11.18149 -10.96006 -10.83118 -10.74288 -10.60214 -10.13726 -9.97135 -9.00754 -7.92900 -5.22950 -0.93843 0.04984 0.46416 1.27485 1.48921 1.51421 1.57593 2.00605 2.16133 2.57004 2.65713 3.26061 3.41459 3.60157 3.76907 3.81552 3.98290 4.08683 4.14454 4.23745 4.24694 4.33277 4.37929 4.41621 4.51410 4.59018 4.66371 4.81703 4.86450 4.88754 4.90451 4.91836 4.93456 5.00146 5.11072 5.17402 5.21787 5.40020 5.51428 5.54365 5.57737 5.67160 6.05544 6.26878 6.37283 6.49620 7.09267 7.34580 8.07816 8.31303 9.29733 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.006494 B = 0.004512 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4310.743646 B = 6203.899338 C = 9847.483672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.135 3.865 4 C 0.040 3.960 5 N -0.480 5.480 6 C 0.110 3.890 7 C -0.304 4.304 8 C 0.593 3.407 9 O -0.539 6.539 10 N -0.700 5.700 11 C 0.146 3.854 12 H 0.072 0.928 13 C 0.144 3.856 14 N -0.744 5.744 15 C -0.245 4.245 16 H 0.080 0.920 17 C -0.071 4.071 18 N -0.968 5.968 19 Si 0.971 3.029 20 H -0.274 1.274 21 H -0.300 1.300 22 H -0.280 1.280 23 C -0.114 4.114 24 C -0.091 4.091 25 C -0.140 4.140 26 C -0.135 4.135 27 S 0.234 5.766 28 H 0.060 0.940 29 H 0.093 0.907 30 H 0.063 0.937 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.194 0.806 34 H 0.402 0.598 35 H 0.041 0.959 36 H 0.040 0.960 37 H 0.373 0.627 38 H 0.249 0.751 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.051 0.949 44 H 0.057 0.943 45 H 0.051 0.949 46 H 0.049 0.951 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.816 17.438 -6.417 20.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C 0.055 3.945 4 C -0.235 4.235 5 N -0.196 5.196 6 C -0.048 4.048 7 C -0.428 4.428 8 C 0.378 3.622 9 O -0.419 6.419 10 N -0.351 5.351 11 C 0.041 3.959 12 H 0.090 0.910 13 C 0.017 3.983 14 N -0.387 5.387 15 C -0.377 4.377 16 H 0.098 0.902 17 C -0.264 4.264 18 N -0.619 5.619 19 Si 0.801 3.199 20 H -0.200 1.200 21 H -0.226 1.226 22 H -0.206 1.206 23 C -0.152 4.152 24 C -0.110 4.110 25 C -0.197 4.197 26 C -0.192 4.192 27 S 0.491 5.509 28 H 0.079 0.921 29 H 0.111 0.889 30 H 0.081 0.919 31 H 0.123 0.877 32 H 0.118 0.882 33 H 0.210 0.790 34 H 0.237 0.763 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.205 0.795 38 H 0.058 0.942 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.544 17.225 -6.150 19.784 hybrid contribution -0.105 -1.132 -0.207 1.156 sum -7.650 16.092 -6.357 18.918 Atomic orbital electron populations 1.23021 0.77903 1.04204 1.01859 1.87950 1.22658 1.27055 1.95834 1.21084 0.82331 0.86213 1.04821 1.27558 1.02104 1.02227 0.91575 1.66206 1.04857 1.16497 1.32050 1.22266 0.90920 0.95981 0.95675 1.25934 0.98724 1.19482 0.98696 1.16801 0.86074 0.76345 0.82930 1.90812 1.44240 1.51110 1.55757 1.45849 1.10082 1.73291 1.05851 1.21311 0.81710 0.97785 0.95065 0.91018 1.21142 0.96253 0.86930 0.93992 1.42527 1.66310 1.20846 1.08992 1.19592 1.28124 1.00346 0.89600 0.90220 1.25530 1.01510 0.99520 0.99797 1.69827 1.43003 1.22073 1.26952 0.85249 0.77563 0.77754 0.79384 1.20013 1.22617 1.20614 1.21978 1.01671 0.94040 0.97553 1.21088 0.99475 0.95410 0.94992 1.21800 1.01350 0.95018 1.01568 1.21776 0.98138 1.00330 0.98938 1.83957 0.95208 1.62009 1.09693 0.92101 0.88852 0.91873 0.87723 0.88207 0.78966 0.76287 0.94140 0.94250 0.79496 0.94175 0.90470 0.89546 0.92574 0.91977 0.92963 0.92398 0.92952 0.93212 0.93857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.42 -9.29 10.69 -148.98 -1.59 -10.88 16 3 C 0.13 2.43 6.51 71.24 0.46 2.89 16 4 C 0.04 0.98 7.02 88.46 0.62 1.60 16 5 N -0.48 -13.68 10.51 -190.29 -2.00 -15.68 16 6 C 0.11 3.23 11.09 84.23 0.93 4.17 16 7 C -0.30 -9.22 6.48 23.88 0.15 -9.06 16 8 C 0.59 19.87 6.34 86.45 0.55 20.42 16 9 O -0.54 -19.82 11.82 -4.32 -0.05 -19.87 16 10 N -0.70 -22.56 4.46 -446.49 -1.99 -24.55 16 11 C 0.15 4.69 2.33 44.99 0.10 4.80 16 12 H 0.07 2.68 5.92 -2.39 -0.01 2.66 16 13 C 0.14 5.32 5.82 86.38 0.50 5.82 16 14 N -0.74 -36.39 5.43 -343.47 -1.87 -38.26 16 15 C -0.25 -13.22 9.99 84.03 0.84 -12.38 16 16 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 17 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 18 N -0.97 -59.06 13.06 21.65 0.28 -58.78 16 19 Si 0.97 45.40 29.55 68.60 2.03 47.42 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 22 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 23 C -0.11 -2.85 4.36 30.59 0.13 -2.72 16 24 C -0.09 -2.33 2.38 -10.80 -0.03 -2.36 16 25 C -0.14 -2.84 9.19 71.98 0.66 -2.18 16 26 C -0.13 -3.75 8.03 71.98 0.58 -3.17 16 27 S 0.23 5.98 22.31 -56.49 -1.26 4.72 16 28 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 29 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.10 1.44 8.14 -2.39 -0.02 1.43 16 33 H 0.19 5.22 8.06 -2.91 -0.02 5.20 16 34 H 0.40 12.62 7.79 -92.71 -0.72 11.90 16 35 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.37 20.02 7.33 -92.71 -0.68 19.34 16 38 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 39 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 40 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.06 1.66 5.19 -2.38 -0.01 1.65 16 42 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 46 H 0.05 1.66 4.75 -2.39 -0.01 1.65 16 47 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -69.78 394.37 0.37 -69.41 By element: Atomic # 1 Polarization: 41.00 SS G_CDS: -0.41 Total: 40.59 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 7.23 Total: 5.88 kcal Atomic # 7 Polarization: -131.69 SS G_CDS: -5.58 Total: -137.27 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -1.64 Total: -30.75 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Atomic # 16 Polarization: 5.98 SS G_CDS: -1.26 Total: 4.72 kcal Total: -69.78 0.37 -69.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753743247.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.927 kcal (2) G-P(sol) polarization free energy of solvation -69.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds