Wall clock time and date at job start Sat Apr 11 2020 06:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47037 * 2 1 4 4 C 1.52996 * 109.47314 * 119.99730 * 2 1 3 5 5 C 1.50709 * 109.46899 * 65.00293 * 4 2 1 6 6 N 1.29421 * 124.80475 * 89.97372 * 5 4 2 7 7 C 1.30945 * 117.36282 * 180.02562 * 6 5 4 8 8 C 1.35656 * 114.18991 * 359.97438 * 7 6 5 9 9 C 1.46689 * 126.12936 * 179.97438 * 8 7 6 10 10 O 1.21687 * 119.99617 * 325.52053 * 9 8 7 11 11 N 1.34770 * 120.00291 * 145.52133 * 9 8 7 12 12 C 1.46510 * 119.99705 * 3.62352 * 11 9 8 13 13 C 1.52995 * 109.47040 * 94.09383 * 12 11 9 14 14 O 1.42905 * 109.47154 * 64.99555 * 13 12 11 15 15 C 1.46497 * 120.00174 * 183.62847 * 11 9 8 16 16 C 1.52993 * 109.47614 * 89.99931 * 15 11 9 17 17 N 1.46497 * 109.47614 * 179.97438 * 16 15 11 18 18 C 1.36932 * 120.00629 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99828 * 359.97438 * 18 17 16 20 20 C 1.38808 * 120.00696 * 180.02562 * 18 17 16 21 21 N 1.31618 * 120.00721 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99737 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.46922 * 90.00256 * 22 20 18 24 24 H 1.48500 * 109.47494 * 210.00544 * 22 20 18 25 25 H 1.48504 * 109.47243 * 330.00494 * 22 20 18 26 26 S 1.70950 * 124.80077 * 270.01483 * 5 4 2 27 27 H 1.09004 * 109.47376 * 299.99997 * 1 2 3 28 28 H 1.09007 * 109.47417 * 59.99994 * 1 2 3 29 29 H 1.08998 * 109.47181 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47001 * 240.00386 * 2 1 3 31 31 H 1.08999 * 109.47211 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.47022 * 300.00248 * 3 2 1 33 33 H 1.09004 * 109.47035 * 59.99794 * 3 2 1 34 34 H 1.08999 * 109.47470 * 305.00278 * 4 2 1 35 35 H 1.09001 * 109.47407 * 185.00072 * 4 2 1 36 36 H 1.08002 * 122.90074 * 179.73328 * 7 6 5 37 37 H 1.09003 * 109.46491 * 214.09291 * 12 11 9 38 38 H 1.08998 * 109.46953 * 334.09352 * 12 11 9 39 39 H 1.08998 * 109.47107 * 185.00100 * 13 12 11 40 40 H 1.09005 * 109.46861 * 305.00250 * 13 12 11 41 41 H 0.96700 * 113.99647 * 180.02562 * 14 13 12 42 42 H 1.09009 * 109.46921 * 210.00090 * 15 11 9 43 43 H 1.08998 * 109.47204 * 329.98906 * 15 11 9 44 44 H 1.09001 * 109.47196 * 300.00405 * 16 15 11 45 45 H 1.09002 * 109.47013 * 59.99559 * 16 15 11 46 46 H 0.97006 * 119.99585 * 359.97438 * 17 16 15 47 47 H 0.96996 * 120.00513 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 -2.1733 1.1889 6 7 2.3538 -3.1134 0.6563 7 6 1.8652 -4.3280 0.6841 8 6 0.6521 -4.4256 1.2834 9 6 -0.1302 -5.6542 1.4575 10 8 -0.0980 -6.5218 0.6049 11 7 -0.8845 -5.8220 2.5616 12 6 -0.9861 -4.7452 3.5499 13 6 -2.2237 -3.8960 3.2535 14 8 -3.3994 -4.6879 3.4348 15 6 -1.6029 -7.0810 2.7736 16 6 -0.7102 -8.0536 3.5469 17 7 -1.4288 -9.3124 3.7594 18 6 -0.8253 -10.3399 4.4342 19 1 0.1806 -10.2223 4.8094 20 6 -1.5060 -11.5328 4.6351 21 7 -0.9258 -12.5206 5.2832 22 14 -3.2456 -11.7364 3.9856 23 1 -3.1979 -12.2840 2.6060 24 1 -3.9956 -12.6704 4.8633 25 1 -3.9262 -10.4166 3.9711 26 16 0.1837 -2.8117 1.8133 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6054 -0.2617 2.1370 35 1 3.1263 -0.6442 1.2952 36 1 2.3816 -5.1778 0.2627 37 1 -1.0709 -5.1751 4.5480 38 1 -0.0952 -4.1194 3.4983 39 1 -2.2510 -3.0441 3.9329 40 1 -2.1814 -3.5389 2.2245 41 1 -4.2239 -4.2127 3.2632 42 1 -2.5114 -6.8893 3.3446 43 1 -1.8650 -7.5166 1.8094 44 1 0.1983 -8.2453 2.9760 45 1 -0.4482 -7.6179 4.5111 46 1 -2.3324 -9.4178 3.4228 47 1 -1.4015 -13.3540 5.4239 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754898989.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:14 Heat of formation + Delta-G solvation = -56.416901 kcal Electronic energy + Delta-G solvation = -27623.479668 eV Core-core repulsion = 23739.564855 eV Total energy + Delta-G solvation = -3883.914814 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.52261 -40.58694 -38.26769 -37.39291 -37.20622 -36.04619 -33.81840 -32.34752 -31.06914 -29.82663 -28.67378 -28.02885 -25.94993 -25.01880 -24.29023 -23.47110 -22.12839 -21.26178 -19.95768 -19.76362 -19.41571 -18.49612 -17.97397 -17.51154 -16.87251 -16.57647 -16.19541 -16.03338 -15.79703 -15.59805 -15.43080 -15.32667 -15.04102 -14.87521 -14.71095 -14.36367 -14.15659 -13.66017 -13.51905 -13.46009 -13.09667 -13.05173 -12.94681 -12.84223 -12.70872 -12.60607 -12.29336 -12.11661 -12.07452 -11.87521 -11.84985 -11.60721 -11.38504 -11.09961 -11.03844 -10.61581 -10.39259 -10.01130 -9.77512 -9.39863 -8.07141 -5.43308 -0.83180 0.01668 0.44869 1.31642 1.36254 1.41269 1.47981 1.64184 1.96266 2.45718 2.97203 3.23268 3.25804 3.33106 3.67377 3.80766 3.90217 3.91987 4.01024 4.04955 4.14425 4.15883 4.22404 4.33391 4.34202 4.50416 4.57924 4.58001 4.72593 4.73272 4.80987 4.89926 4.94360 4.96171 4.98462 5.02386 5.08693 5.30684 5.31937 5.41820 5.47641 5.67924 6.11473 6.15392 6.54622 6.83579 6.93164 7.00617 7.73409 7.95328 9.13969 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023085 B = 0.002456 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.593089 B =11395.967655 C =12026.068668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.089 4.089 3 C -0.142 4.142 4 C -0.046 4.046 5 C 0.049 3.951 6 N -0.501 5.501 7 C 0.113 3.887 8 C -0.325 4.325 9 C 0.587 3.413 10 O -0.567 6.567 11 N -0.588 5.588 12 C 0.080 3.920 13 C 0.060 3.940 14 O -0.586 6.586 15 C 0.127 3.873 16 C 0.150 3.850 17 N -0.753 5.753 18 C -0.243 4.243 19 H 0.053 0.947 20 C -0.062 4.062 21 N -0.981 5.981 22 Si 0.959 3.041 23 H -0.280 1.280 24 H -0.288 1.288 25 H -0.247 1.247 26 S 0.256 5.744 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.042 0.958 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.118 0.882 35 H 0.101 0.899 36 H 0.176 0.824 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.102 0.898 40 H 0.049 0.951 41 H 0.398 0.602 42 H 0.108 0.892 43 H 0.067 0.933 44 H 0.004 0.996 45 H 0.032 0.968 46 H 0.369 0.631 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.186 38.022 -7.397 38.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.109 4.109 3 C -0.200 4.200 4 C -0.086 4.086 5 C -0.225 4.225 6 N -0.215 5.215 7 C -0.045 4.045 8 C -0.449 4.449 9 C 0.374 3.626 10 O -0.448 6.448 11 N -0.319 5.319 12 C -0.043 4.043 13 C -0.019 4.019 14 O -0.395 6.395 15 C 0.004 3.996 16 C 0.022 3.978 17 N -0.399 5.399 18 C -0.373 4.373 19 H 0.071 0.929 20 C -0.254 4.254 21 N -0.631 5.631 22 Si 0.785 3.215 23 H -0.207 1.207 24 H -0.215 1.215 25 H -0.171 1.171 26 S 0.515 5.485 27 H 0.097 0.903 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.136 0.864 35 H 0.119 0.881 36 H 0.193 0.807 37 H 0.119 0.881 38 H 0.129 0.871 39 H 0.120 0.880 40 H 0.067 0.933 41 H 0.249 0.751 42 H 0.126 0.874 43 H 0.086 0.914 44 H 0.022 0.978 45 H 0.050 0.950 46 H 0.202 0.798 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.933 37.652 -7.255 38.356 hybrid contribution -0.327 -1.678 -0.941 1.951 sum -1.259 35.974 -8.196 36.917 Atomic orbital electron populations 1.22062 0.94589 1.01570 1.03558 1.21077 0.96458 0.97051 0.96362 1.21797 1.01349 0.93849 1.02977 1.20723 1.03837 0.83113 1.00952 1.28326 0.95732 1.01582 0.96855 1.66297 1.35140 0.99467 1.20639 1.22127 0.91718 0.95241 0.95430 1.25560 1.03275 0.99290 1.16744 1.17268 0.78689 0.85013 0.81594 1.90842 1.65338 1.44988 1.43587 1.47657 1.46986 1.16261 1.21002 1.22443 0.99063 0.89320 0.93484 1.22767 0.84840 0.93540 1.00719 1.86514 1.17143 1.42889 1.92925 1.21436 0.94863 0.82649 1.00700 1.20946 0.94221 0.85622 0.97003 1.42469 1.16002 1.12809 1.68642 1.18971 0.98509 0.92564 1.27299 0.92937 1.25571 1.03233 0.95528 1.01022 1.69885 1.39606 1.05543 1.48022 0.85350 0.79823 0.78609 0.77686 1.20651 1.21463 1.17092 1.83563 1.19835 0.94228 1.50922 0.90304 0.91786 0.93942 0.92428 0.92240 0.92093 0.90949 0.86386 0.88075 0.80737 0.88138 0.87124 0.88041 0.93312 0.75144 0.87386 0.91430 0.97758 0.94957 0.79799 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 8.89 71.98 0.64 -0.52 16 2 C -0.09 -0.73 2.91 -10.79 -0.03 -0.76 16 3 C -0.14 -0.70 9.19 71.98 0.66 -0.04 16 4 C -0.05 -0.38 5.27 29.85 0.16 -0.23 16 5 C 0.05 0.75 6.01 88.47 0.53 1.28 16 6 N -0.50 -11.12 10.51 -190.30 -2.00 -13.12 16 7 C 0.11 2.85 11.24 84.23 0.95 3.80 16 8 C -0.32 -8.01 5.69 23.88 0.14 -7.87 16 9 C 0.59 18.78 7.58 86.45 0.65 19.44 16 10 O -0.57 -23.43 16.59 -4.31 -0.07 -23.50 16 11 N -0.59 -16.83 2.46 -826.52 -2.03 -18.86 16 12 C 0.08 1.52 5.36 86.38 0.46 1.98 16 13 C 0.06 0.78 6.42 71.98 0.46 1.24 16 14 O -0.59 -9.70 12.11 -148.98 -1.80 -11.50 16 15 C 0.13 4.38 5.37 86.38 0.46 4.85 16 16 C 0.15 6.46 6.58 86.38 0.57 7.03 16 17 N -0.75 -38.33 5.41 -343.47 -1.86 -40.18 16 18 C -0.24 -14.80 10.47 84.03 0.88 -13.92 16 19 H 0.05 3.51 8.06 -2.91 -0.02 3.49 16 20 C -0.06 -3.81 5.50 84.86 0.47 -3.34 16 21 N -0.98 -64.89 13.97 21.65 0.30 -64.58 16 22 Si 0.96 47.10 27.74 68.60 1.90 49.00 16 23 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 24 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 25 H -0.25 -10.82 6.52 99.48 0.65 -10.18 16 26 S 0.26 3.50 15.78 -56.49 -0.89 2.60 16 27 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 28 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 29 H 0.04 0.42 6.14 -2.39 -0.01 0.40 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.06 0.31 8.14 -2.38 -0.02 0.29 16 33 H 0.07 0.18 8.14 -2.39 -0.02 0.16 16 34 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.18 4.56 8.06 -2.91 -0.02 4.54 16 37 H 0.10 1.97 8.10 -2.39 -0.02 1.95 16 38 H 0.11 1.71 4.75 -14.55 -0.07 1.64 16 39 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.05 0.61 6.65 -2.38 -0.02 0.59 16 41 H 0.40 2.89 9.12 -74.06 -0.68 2.21 16 42 H 0.11 3.44 6.75 -2.38 -0.02 3.42 16 43 H 0.07 2.58 7.37 -2.39 -0.02 2.56 16 44 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 45 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.37 17.63 5.53 -92.70 -0.51 17.12 16 47 H 0.26 16.27 8.31 -92.71 -0.77 15.49 16 Total: -1.00 -85.05 390.16 0.24 -84.81 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: -0.31 Total: 22.40 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: 7.00 Total: 12.93 kcal Atomic # 7 Polarization: -131.17 SS G_CDS: -5.58 Total: -136.75 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -1.88 Total: -35.00 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 1.90 Total: 49.00 kcal Atomic # 16 Polarization: 3.50 SS G_CDS: -0.89 Total: 2.60 kcal Total: -85.05 0.24 -84.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754898989.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.392 kcal (2) G-P(sol) polarization free energy of solvation -85.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds