Wall clock time and date at job start Sat Apr 11 2020 06:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.45968 * 2 1 4 4 C 1.53044 * 109.44512 * 240.03488 * 2 1 3 5 5 C 1.53186 * 109.31167 * 178.61955 * 4 2 1 6 6 N 1.46931 * 108.77815 * 54.63410 * 5 4 2 7 7 S 1.65595 * 120.62832 * 126.41307 * 6 5 4 8 8 O 1.42103 * 104.27538 * 206.07650 * 7 6 5 9 9 O 1.42096 * 104.28261 * 333.92717 * 7 6 5 10 10 C 1.81400 * 104.45061 * 90.00305 * 7 6 5 11 11 C 1.53003 * 109.47002 * 179.97438 * 10 7 6 12 12 C 1.53004 * 109.47012 * 179.97438 * 11 10 7 13 13 C 1.50700 * 109.47071 * 180.02562 * 12 11 10 14 14 H 1.07993 * 119.99983 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99733 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00079 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99653 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47255 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46736 * 120.00323 * 17 15 13 20 20 H 1.48507 * 109.46862 * 240.00181 * 17 15 13 21 21 C 1.46919 * 118.73538 * 306.39575 * 6 5 4 22 22 C 1.53033 * 109.46259 * 119.97333 * 2 1 3 23 23 H 1.09006 * 109.49847 * 61.38710 * 22 2 1 24 24 N 1.46500 * 109.50170 * 301.32456 * 22 2 1 25 25 C 1.36876 * 126.40416 * 120.28329 * 24 22 2 26 26 C 1.34665 * 106.82156 * 180.19389 * 25 24 22 27 27 N 1.34127 * 108.01668 * 359.58498 * 26 25 24 28 28 C 1.30500 * 109.25894 * 0.26753 * 27 26 25 29 29 H 1.09008 * 109.46872 * 300.02346 * 1 2 3 30 30 H 1.08994 * 109.47474 * 60.02313 * 1 2 3 31 31 H 1.09004 * 109.47140 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.49702 * 298.56886 * 4 2 1 33 33 H 1.09004 * 109.49735 * 58.66545 * 4 2 1 34 34 H 1.09005 * 109.58926 * 174.42488 * 5 4 2 35 35 H 1.09003 * 109.58735 * 294.70495 * 5 4 2 36 36 H 1.08990 * 109.47007 * 299.99745 * 10 7 6 37 37 H 1.09008 * 109.47019 * 59.99901 * 10 7 6 38 38 H 1.08990 * 109.47549 * 300.00047 * 11 10 7 39 39 H 1.09008 * 109.46797 * 60.00399 * 11 10 7 40 40 H 1.09006 * 109.47196 * 300.00799 * 12 11 10 41 41 H 1.09004 * 109.46530 * 60.00222 * 12 11 10 42 42 H 0.96995 * 119.99926 * 179.97438 * 16 15 13 43 43 H 1.09008 * 109.58906 * 293.81121 * 21 6 5 44 44 H 1.09006 * 109.58520 * 173.39397 * 21 6 5 45 45 H 1.08002 * 126.59064 * 0.08563 * 25 24 22 46 46 H 1.08002 * 125.99463 * 179.85418 * 26 25 24 47 47 H 1.07994 * 125.64966 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0395 -0.7208 -1.2502 5 6 3.5710 -0.6889 -1.2647 6 7 4.0677 -1.2493 -0.0005 7 16 5.1661 -2.4885 -0.0008 8 8 4.9457 -3.1525 1.2360 9 8 4.9457 -3.1521 -1.2378 10 6 6.7809 -1.6620 -0.0007 11 6 7.8921 -2.7137 -0.0004 12 6 9.2541 -2.0166 -0.0009 13 6 10.3486 -3.0525 -0.0012 14 1 10.0979 -4.1029 -0.0014 15 6 11.6701 -2.6591 -0.0012 16 7 11.9754 -1.3799 -0.0004 17 14 13.0268 -3.9432 -0.0023 18 1 12.4239 -5.3003 -0.0037 19 1 13.8673 -3.7741 -1.2148 20 1 13.8677 -3.7758 1.2103 21 6 3.5714 -0.6891 1.2638 22 6 2.0399 -0.7209 1.2499 23 1 1.6972 -1.7556 1.2384 24 7 1.5260 -0.0489 2.4459 25 6 0.7401 -0.6078 3.4173 26 6 0.4967 0.3570 4.3246 27 7 1.1245 1.4722 3.9230 28 6 1.7431 1.2366 2.7984 29 1 -0.3633 0.5142 0.8898 30 1 -0.3634 0.5134 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.6973 -1.7556 -1.2384 33 1 1.6568 -0.2207 -2.1399 34 1 3.9411 -1.2849 -2.0990 35 1 3.9141 0.3403 -1.3703 36 1 6.8702 -1.0389 -0.8905 37 1 6.8702 -1.0392 0.8895 38 1 7.8027 -3.3365 0.8896 39 1 7.8029 -3.3368 -0.8904 40 1 9.3433 -1.3940 -0.8912 41 1 9.3435 -1.3933 0.8888 42 1 12.9050 -1.1032 0.0000 43 1 3.9146 0.3404 1.3670 44 1 3.9418 -1.2851 2.0979 45 1 0.3825 -1.6264 3.4490 46 1 -0.0963 0.2504 5.2210 47 1 2.3315 1.9511 2.2420 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247733369.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:27 Heat of formation + Delta-G solvation = -22.247573 kcal Electronic energy + Delta-G solvation = -28155.846662 eV Core-core repulsion = 24273.413542 eV Total energy + Delta-G solvation = -3882.433120 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.42219 -39.22769 -37.15607 -35.93393 -34.78236 -34.71766 -33.40835 -32.24633 -30.35085 -29.43003 -28.17324 -27.80308 -24.24971 -23.81907 -23.20309 -22.04004 -21.39832 -20.68075 -20.18900 -18.86411 -18.04152 -17.41898 -16.68859 -16.51942 -15.85777 -15.68044 -15.23095 -15.01461 -14.58936 -14.46768 -14.39132 -14.19489 -14.10182 -14.01128 -13.76712 -13.21347 -12.94831 -12.68875 -12.55259 -12.34681 -12.18554 -12.11722 -12.02920 -11.89342 -11.84959 -11.41469 -11.35142 -11.18418 -11.03866 -10.97658 -10.90912 -10.47417 -10.17194 -10.02900 -9.96044 -9.60467 -9.30954 -9.07413 -8.72689 -8.45709 -6.10299 -4.13582 0.22741 1.83902 2.28788 2.66741 2.99311 3.26295 3.34011 3.38625 3.79403 3.93587 4.02843 4.13339 4.24833 4.38384 4.45807 4.49964 4.53763 4.65644 4.75768 4.88013 5.01733 5.02848 5.06287 5.15100 5.18799 5.24374 5.26286 5.26944 5.32851 5.41343 5.48092 5.50085 5.67283 5.72874 5.78774 5.79810 6.06474 6.11637 6.22734 6.35668 6.52429 6.79247 6.94522 7.51128 7.60224 7.87368 7.87469 8.27428 8.92817 9.51534 11.00954 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018216 B = 0.002460 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.768203 B =11380.154551 C =12093.654195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 H 0.083 0.917 4 C -0.123 4.123 5 C 0.111 3.889 6 N -1.002 6.002 7 S 2.595 3.405 8 O -0.958 6.958 9 O -0.955 6.955 10 C -0.605 4.605 11 C -0.106 4.106 12 C 0.031 3.969 13 C -0.527 4.527 14 H 0.059 0.941 15 C 0.058 3.942 16 N -0.895 5.895 17 Si 0.894 3.106 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.111 3.889 22 C 0.128 3.872 23 H 0.106 0.894 24 N -0.449 5.449 25 C -0.051 4.051 26 C -0.032 4.032 27 N -0.495 5.495 28 C 0.182 3.818 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.073 0.927 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.021 0.979 41 H 0.021 0.979 42 H 0.261 0.739 43 H 0.078 0.922 44 H 0.104 0.896 45 H 0.172 0.828 46 H 0.168 0.832 47 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.052 5.215 -0.444 25.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 H 0.101 0.899 4 C -0.163 4.163 5 C -0.014 4.014 6 N -0.838 5.838 7 S 2.693 3.307 8 O -0.948 6.948 9 O -0.945 6.945 10 C -0.737 4.737 11 C -0.146 4.146 12 C -0.008 4.008 13 C -0.565 4.565 14 H 0.077 0.923 15 C -0.144 4.144 16 N -0.534 5.534 17 Si 0.722 3.278 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.015 4.015 22 C 0.023 3.977 23 H 0.124 0.876 24 N -0.131 5.131 25 C -0.184 4.184 26 C -0.180 4.180 27 N -0.213 5.213 28 C -0.100 4.100 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.120 0.880 35 H 0.092 0.908 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.039 0.961 41 H 0.039 0.961 42 H 0.071 0.929 43 H 0.097 0.903 44 H 0.123 0.877 45 H 0.189 0.811 46 H 0.185 0.815 47 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -25.110 5.083 -0.154 25.620 hybrid contribution 1.206 -0.740 -0.381 1.465 sum -23.904 4.343 -0.535 24.301 Atomic orbital electron populations 1.21819 0.94021 1.02243 1.02364 1.21467 0.96745 1.00156 0.93325 0.89899 1.21934 0.95317 1.01753 0.97267 1.21557 0.94434 1.00025 0.85359 1.57925 1.59080 1.56001 1.10800 1.05603 0.76574 0.74277 0.74250 1.93566 1.84602 1.71356 1.45293 1.93565 1.84591 1.71209 1.45173 1.30570 1.18884 1.12938 1.11337 1.21523 0.95682 0.95396 1.01981 1.19068 0.88135 0.95788 0.97761 1.21277 0.90946 0.93178 1.51103 0.92313 1.25024 0.98936 0.95376 0.95046 1.69960 1.18359 1.14490 1.50560 0.86497 0.81848 0.81797 0.77668 1.19595 1.20905 1.20894 1.21663 0.92155 1.00980 0.86747 1.21871 0.94731 0.98029 0.83050 0.87582 1.45562 1.38097 1.10963 1.18519 1.22761 1.02313 1.00973 0.92381 1.22283 1.04888 0.89482 1.01359 1.70314 1.12278 1.27967 1.10754 1.24879 1.03907 0.85520 0.95736 0.92332 0.91946 0.92488 0.90795 0.89626 0.87987 0.90845 0.85291 0.85391 0.91570 0.91543 0.96096 0.96102 0.92898 0.90346 0.87734 0.81075 0.81510 0.78295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.02 37.16 0.34 -0.53 16 2 C -0.10 -0.58 2.12 -90.58 -0.19 -0.77 16 3 H 0.08 0.44 7.98 -51.93 -0.41 0.03 16 4 C -0.12 -0.74 5.36 -26.61 -0.14 -0.88 16 5 C 0.11 0.82 6.43 -3.71 -0.02 0.79 16 6 N -1.00 -9.45 3.22 -113.52 -0.37 -9.81 16 7 S 2.59 34.86 5.45 -107.50 -0.59 34.27 16 8 O -0.96 -15.52 16.59 -57.54 -0.95 -16.48 16 9 O -0.96 -15.15 16.59 -57.54 -0.95 -16.10 16 10 C -0.61 -8.70 6.18 37.16 0.23 -8.47 16 11 C -0.11 -2.08 5.16 -26.73 -0.14 -2.22 16 12 C 0.03 0.76 4.97 -27.88 -0.14 0.63 16 13 C -0.53 -14.63 9.11 -34.44 -0.31 -14.94 16 14 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 17 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 18 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 C 0.11 0.94 5.82 -3.72 -0.02 0.92 16 22 C 0.13 0.96 2.47 -67.82 -0.17 0.79 16 23 H 0.11 0.83 8.08 -51.93 -0.42 0.41 16 24 N -0.45 -3.72 1.80 -111.34 -0.20 -3.92 16 25 C -0.05 -0.44 11.54 -16.57 -0.19 -0.63 16 26 C -0.03 -0.32 11.87 -17.81 -0.21 -0.53 16 27 N -0.50 -5.74 11.25 -14.67 -0.17 -5.91 16 28 C 0.18 1.66 11.48 -90.37 -1.04 0.63 16 29 H 0.06 0.43 7.57 -51.92 -0.39 0.03 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.10 0.82 6.86 -51.93 -0.36 0.47 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.13 1.62 8.14 -51.93 -0.42 1.20 16 37 H 0.13 1.65 8.14 -51.92 -0.42 1.23 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.07 1.27 8.14 -51.92 -0.42 0.84 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 43 H 0.08 0.53 7.80 -51.92 -0.41 0.12 16 44 H 0.10 1.04 6.86 -51.93 -0.36 0.68 16 45 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 46 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 47 H 0.20 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 390.99 15.07 5.89 5.89 Total: -1.00 -35.58 390.99 -11.53 -47.11 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -7.81 Total: -2.15 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: -2.11 Total: -23.69 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: 0.01 Total: -45.18 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -1.91 Total: -32.58 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 34.86 SS G_CDS: -0.59 Total: 34.27 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.58 -11.53 -47.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247733369.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.863 kcal (2) G-P(sol) polarization free energy of solvation -35.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds