Wall clock time and date at job start Sat Apr 11 2020 06:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.45968 * 2 1 4 4 C 1.53044 * 109.44512 * 240.03488 * 2 1 3 5 5 C 1.53186 * 109.31167 * 178.61955 * 4 2 1 6 6 N 1.46931 * 108.77815 * 54.63410 * 5 4 2 7 7 S 1.65595 * 120.62832 * 126.41307 * 6 5 4 8 8 O 1.42103 * 104.27538 * 206.07650 * 7 6 5 9 9 O 1.42096 * 104.28261 * 333.92717 * 7 6 5 10 10 C 1.81400 * 104.45061 * 90.00305 * 7 6 5 11 11 C 1.53003 * 109.47002 * 179.97438 * 10 7 6 12 12 C 1.53004 * 109.47012 * 179.97438 * 11 10 7 13 13 C 1.50700 * 109.47071 * 180.02562 * 12 11 10 14 14 H 1.07993 * 119.99983 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99733 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00079 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99653 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47255 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46736 * 120.00323 * 17 15 13 20 20 H 1.48507 * 109.46862 * 240.00181 * 17 15 13 21 21 C 1.46919 * 118.73538 * 306.39575 * 6 5 4 22 22 C 1.53033 * 109.46259 * 119.97333 * 2 1 3 23 23 H 1.09006 * 109.49847 * 61.38710 * 22 2 1 24 24 N 1.46500 * 109.50170 * 301.32456 * 22 2 1 25 25 C 1.36876 * 126.40416 * 120.28329 * 24 22 2 26 26 C 1.34665 * 106.82156 * 180.19389 * 25 24 22 27 27 N 1.34127 * 108.01668 * 359.58498 * 26 25 24 28 28 C 1.30500 * 109.25894 * 0.26753 * 27 26 25 29 29 H 1.09008 * 109.46872 * 300.02346 * 1 2 3 30 30 H 1.08994 * 109.47474 * 60.02313 * 1 2 3 31 31 H 1.09004 * 109.47140 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.49702 * 298.56886 * 4 2 1 33 33 H 1.09004 * 109.49735 * 58.66545 * 4 2 1 34 34 H 1.09005 * 109.58926 * 174.42488 * 5 4 2 35 35 H 1.09003 * 109.58735 * 294.70495 * 5 4 2 36 36 H 1.08990 * 109.47007 * 299.99745 * 10 7 6 37 37 H 1.09008 * 109.47019 * 59.99901 * 10 7 6 38 38 H 1.08990 * 109.47549 * 300.00047 * 11 10 7 39 39 H 1.09008 * 109.46797 * 60.00399 * 11 10 7 40 40 H 1.09006 * 109.47196 * 300.00799 * 12 11 10 41 41 H 1.09004 * 109.46530 * 60.00222 * 12 11 10 42 42 H 0.96995 * 119.99926 * 179.97438 * 16 15 13 43 43 H 1.09008 * 109.58906 * 293.81121 * 21 6 5 44 44 H 1.09006 * 109.58520 * 173.39397 * 21 6 5 45 45 H 1.08002 * 126.59064 * 0.08563 * 25 24 22 46 46 H 1.08002 * 125.99463 * 179.85418 * 26 25 24 47 47 H 1.07994 * 125.64966 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0395 -0.7208 -1.2502 5 6 3.5710 -0.6889 -1.2647 6 7 4.0677 -1.2493 -0.0005 7 16 5.1661 -2.4885 -0.0008 8 8 4.9457 -3.1525 1.2360 9 8 4.9457 -3.1521 -1.2378 10 6 6.7809 -1.6620 -0.0007 11 6 7.8921 -2.7137 -0.0004 12 6 9.2541 -2.0166 -0.0009 13 6 10.3486 -3.0525 -0.0012 14 1 10.0979 -4.1029 -0.0014 15 6 11.6701 -2.6591 -0.0012 16 7 11.9754 -1.3799 -0.0004 17 14 13.0268 -3.9432 -0.0023 18 1 12.4239 -5.3003 -0.0037 19 1 13.8673 -3.7741 -1.2148 20 1 13.8677 -3.7758 1.2103 21 6 3.5714 -0.6891 1.2638 22 6 2.0399 -0.7209 1.2499 23 1 1.6972 -1.7556 1.2384 24 7 1.5260 -0.0489 2.4459 25 6 0.7401 -0.6078 3.4173 26 6 0.4967 0.3570 4.3246 27 7 1.1245 1.4722 3.9230 28 6 1.7431 1.2366 2.7984 29 1 -0.3633 0.5142 0.8898 30 1 -0.3634 0.5134 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.6973 -1.7556 -1.2384 33 1 1.6568 -0.2207 -2.1399 34 1 3.9411 -1.2849 -2.0990 35 1 3.9141 0.3403 -1.3703 36 1 6.8702 -1.0389 -0.8905 37 1 6.8702 -1.0392 0.8895 38 1 7.8027 -3.3365 0.8896 39 1 7.8029 -3.3368 -0.8904 40 1 9.3433 -1.3940 -0.8912 41 1 9.3435 -1.3933 0.8888 42 1 12.9050 -1.1032 0.0000 43 1 3.9146 0.3404 1.3670 44 1 3.9418 -1.2851 2.0979 45 1 0.3825 -1.6264 3.4490 46 1 -0.0963 0.2504 5.2210 47 1 2.3315 1.9511 2.2420 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000247733369.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:26 Heat of formation + Delta-G solvation = -44.089521 kcal Electronic energy + Delta-G solvation = -28156.793800 eV Core-core repulsion = 24273.413542 eV Total energy + Delta-G solvation = -3883.380258 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.08154 -39.84506 -38.33690 -37.12427 -36.49088 -35.43482 -34.18467 -34.00152 -30.99026 -30.07219 -29.69409 -28.68412 -25.63624 -24.87168 -23.86155 -22.66874 -22.38008 -22.01084 -20.89513 -19.77580 -18.89415 -18.62818 -18.15625 -17.44936 -17.18267 -16.51543 -16.47283 -16.09866 -15.63963 -15.54362 -15.14231 -14.93668 -14.81859 -14.64117 -14.51622 -14.41105 -14.07994 -13.90011 -13.56394 -13.51179 -13.26396 -13.24756 -13.07625 -13.02837 -12.84796 -12.79188 -12.63079 -12.44401 -12.17666 -11.95529 -11.79625 -11.78320 -11.59183 -11.38822 -11.11067 -10.89290 -10.62829 -10.59836 -9.99933 -9.40451 -8.24676 -6.35600 -0.86613 1.17984 1.38391 1.39363 1.47262 1.52310 1.92610 2.27872 2.38282 2.72935 3.07297 3.09186 3.34577 3.41769 3.67740 3.74777 3.83065 3.90338 3.95512 3.96276 4.09164 4.20097 4.35111 4.37600 4.51730 4.57788 4.59438 4.62848 4.66003 4.72492 4.81278 4.83600 4.92239 4.94893 5.01857 5.03932 5.12524 5.25891 5.29793 5.43447 5.43993 5.49169 5.60596 5.77550 5.86147 6.17678 6.31211 6.80303 7.19048 7.33990 8.86969 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018216 B = 0.002460 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.768203 B =11380.154551 C =12093.654195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.091 4.091 3 H 0.098 0.902 4 C -0.119 4.119 5 C 0.101 3.899 6 N -0.991 5.991 7 S 2.623 3.377 8 O -0.987 6.987 9 O -0.979 6.979 10 C -0.608 4.608 11 C -0.107 4.107 12 C 0.031 3.969 13 C -0.552 4.552 14 H 0.059 0.941 15 C 0.003 3.997 16 N -0.929 5.929 17 Si 0.962 3.038 18 H -0.264 1.264 19 H -0.276 1.276 20 H -0.277 1.277 21 C 0.106 3.894 22 C 0.131 3.869 23 H 0.101 0.899 24 N -0.445 5.445 25 C -0.053 4.053 26 C -0.054 4.054 27 N -0.535 5.535 28 C 0.181 3.819 29 H 0.043 0.957 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.148 0.852 37 H 0.142 0.858 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.005 0.995 41 H 0.002 0.998 42 H 0.265 0.735 43 H 0.103 0.897 44 H 0.088 0.912 45 H 0.191 0.809 46 H 0.178 0.822 47 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.888 5.521 -1.334 26.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 H 0.116 0.884 4 C -0.159 4.159 5 C -0.023 4.023 6 N -0.830 5.830 7 S 2.720 3.280 8 O -0.977 6.977 9 O -0.969 6.969 10 C -0.739 4.739 11 C -0.146 4.146 12 C -0.007 4.007 13 C -0.590 4.590 14 H 0.078 0.922 15 C -0.195 4.195 16 N -0.569 5.569 17 Si 0.786 3.214 18 H -0.188 1.188 19 H -0.201 1.201 20 H -0.203 1.203 21 C -0.020 4.020 22 C 0.026 3.974 23 H 0.119 0.881 24 N -0.128 5.128 25 C -0.186 4.186 26 C -0.201 4.201 27 N -0.254 5.254 28 C -0.102 4.102 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.127 0.873 34 H 0.113 0.887 35 H 0.120 0.880 36 H 0.166 0.834 37 H 0.161 0.839 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.023 0.977 41 H 0.020 0.980 42 H 0.074 0.926 43 H 0.121 0.879 44 H 0.106 0.894 45 H 0.208 0.792 46 H 0.195 0.805 47 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -25.938 5.375 -1.049 26.510 hybrid contribution 1.396 -0.785 -0.104 1.606 sum -24.542 4.589 -1.153 24.994 Atomic orbital electron populations 1.21756 0.93894 1.02036 1.02185 1.21453 0.96689 1.00645 0.92234 0.88425 1.21937 0.94198 1.01553 0.98200 1.21883 0.95380 1.01237 0.83754 1.57547 1.57740 1.55419 1.12264 1.04508 0.76233 0.74340 0.72924 1.93526 1.84942 1.72703 1.46570 1.93531 1.84877 1.72372 1.46138 1.30549 1.18143 1.12036 1.13136 1.21317 0.94870 0.96466 1.01981 1.18961 0.90663 0.95134 0.95943 1.21765 0.92303 0.93946 1.50986 0.92227 1.25925 1.01537 0.97486 0.94582 1.70066 1.19097 1.16370 1.51395 0.85444 0.78672 0.79306 0.77937 1.18798 1.20142 1.20273 1.21815 0.92857 1.01831 0.85519 1.21889 0.93967 0.98078 0.83490 0.88120 1.45599 1.37783 1.10782 1.18601 1.23096 1.01891 1.01602 0.92000 1.22591 1.05547 0.89624 1.02319 1.70281 1.13718 1.29140 1.12243 1.25347 1.03437 0.86086 0.95300 0.93770 0.90792 0.92753 0.91803 0.87290 0.88661 0.88036 0.83361 0.83940 0.91816 0.91474 0.97704 0.97977 0.92604 0.87924 0.89388 0.79228 0.80513 0.75864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.02 71.98 0.65 -0.67 16 2 C -0.09 -0.81 2.12 -10.77 -0.02 -0.83 16 3 H 0.10 0.64 7.98 -2.39 -0.02 0.62 16 4 C -0.12 -1.07 5.36 30.67 0.16 -0.90 16 5 C 0.10 1.19 6.43 86.36 0.56 1.74 16 6 N -0.99 -16.62 3.22 -513.06 -1.65 -18.27 16 7 S 2.62 67.88 5.45 -56.49 -0.31 67.57 16 8 O -0.99 -31.60 16.59 -127.65 -2.12 -33.72 16 9 O -0.98 -30.20 16.59 -127.65 -2.12 -32.31 16 10 C -0.61 -16.93 6.18 71.98 0.44 -16.48 16 11 C -0.11 -4.21 5.16 30.60 0.16 -4.06 16 12 C 0.03 1.58 4.97 29.85 0.15 1.73 16 13 C -0.55 -31.05 9.11 25.60 0.23 -30.82 16 14 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 15 C 0.00 0.17 5.46 84.66 0.46 0.63 16 16 N -0.93 -55.18 13.29 21.45 0.28 -54.89 16 17 Si 0.96 43.79 29.54 68.60 2.03 45.82 16 18 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 19 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 20 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 21 C 0.11 1.57 5.82 86.36 0.50 2.08 16 22 C 0.13 1.68 2.47 45.07 0.11 1.79 16 23 H 0.10 1.43 8.08 -2.38 -0.02 1.41 16 24 N -0.45 -6.67 1.80 -506.16 -0.91 -7.58 16 25 C -0.05 -0.85 11.54 83.09 0.96 0.11 16 26 C -0.05 -1.04 11.87 83.52 0.99 -0.05 16 27 N -0.54 -12.06 11.25 -200.32 -2.25 -14.32 16 28 C 0.18 3.01 11.48 180.26 2.07 5.08 16 29 H 0.04 0.56 7.57 -2.38 -0.02 0.54 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.10 1.31 6.86 -2.38 -0.02 1.29 16 35 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.15 3.51 8.14 -2.40 -0.02 3.49 16 37 H 0.14 3.52 8.14 -2.39 -0.02 3.50 16 38 H 0.06 2.48 8.14 -2.39 -0.02 2.47 16 39 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 40 H 0.00 0.24 8.14 -2.38 -0.02 0.22 16 41 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16 42 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 43 H 0.10 1.05 7.80 -2.38 -0.02 1.03 16 44 H 0.09 1.65 6.86 -2.38 -0.02 1.63 16 45 H 0.19 2.16 8.06 -2.91 -0.02 2.13 16 46 H 0.18 2.75 8.06 -2.91 -0.02 2.73 16 47 H 0.23 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -77.57 390.99 1.31 -76.25 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.94 Total: 12.12 kcal Atomic # 6 Polarization: -48.09 SS G_CDS: 7.43 Total: -40.66 kcal Atomic # 7 Polarization: -90.53 SS G_CDS: -4.53 Total: -95.06 kcal Atomic # 8 Polarization: -61.80 SS G_CDS: -4.24 Total: -66.03 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: 67.88 SS G_CDS: -0.31 Total: 67.57 kcal Total: -77.57 1.31 -76.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247733369.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.161 kcal (2) G-P(sol) polarization free energy of solvation -77.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds