Wall clock time and date at job start Sat Apr 11 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.62658 * 2 1 4 4 C 1.53252 * 109.63383 * 120.38990 * 2 1 3 5 5 N 1.46467 * 109.86156 * 181.70697 * 4 2 1 6 6 C 1.46897 * 110.99954 * 162.23783 * 5 4 2 7 7 C 1.50693 * 109.47267 * 65.30970 * 6 5 4 8 8 O 1.21285 * 120.00125 * 354.74683 * 7 6 5 9 9 N 1.34781 * 120.00092 * 174.75745 * 7 6 5 10 10 C 1.46500 * 120.00070 * 179.97438 * 9 7 6 11 11 C 1.50692 * 109.46943 * 269.99448 * 10 9 7 12 12 H 1.08003 * 120.00650 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00014 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99696 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00034 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47222 * 90.00022 * 15 13 11 17 17 H 1.48506 * 109.47152 * 209.99921 * 15 13 11 18 18 H 1.48498 * 109.47193 * 329.99976 * 15 13 11 19 19 C 1.46502 * 119.99830 * 359.97438 * 9 7 6 20 20 C 1.53001 * 109.46957 * 90.00779 * 19 9 7 21 21 C 1.47201 * 109.47120 * 180.02562 * 20 19 9 22 22 N 8.62440 * 117.93537 * 89.90388 * 2 1 3 23 23 C 1.46469 * 112.55900 * 287.34953 * 5 4 2 24 24 C 1.53244 * 109.86351 * 72.65387 * 23 5 4 25 25 H 1.09002 * 109.79739 * 178.19203 * 24 23 5 26 26 C 1.53001 * 109.63114 * 57.69977 * 24 23 5 27 27 S 1.81894 * 109.63140 * 239.40724 * 2 1 3 28 28 O 1.42102 * 109.47342 * 73.14240 * 27 2 1 29 29 H 1.09004 * 109.47034 * 299.60400 * 1 2 3 30 30 H 1.08996 * 109.47452 * 59.61090 * 1 2 3 31 31 H 1.08997 * 109.46623 * 179.61012 * 1 2 3 32 32 H 1.09008 * 109.40162 * 61.59116 * 4 2 1 33 33 H 1.08999 * 109.40787 * 301.82894 * 4 2 1 34 34 H 1.09006 * 109.46776 * 305.30458 * 6 5 4 35 35 H 1.09001 * 109.47359 * 185.31086 * 6 5 4 36 36 H 1.09005 * 109.46716 * 29.99567 * 10 9 7 37 37 H 1.08999 * 109.46892 * 149.99334 * 10 9 7 38 38 H 0.97001 * 119.99632 * 179.97438 * 14 13 11 39 39 H 1.09003 * 109.47108 * 330.00674 * 19 9 7 40 40 H 1.08997 * 109.47287 * 210.00456 * 19 9 7 41 41 H 1.08993 * 109.47126 * 59.99248 * 20 19 9 42 42 H 1.09006 * 109.46927 * 300.00172 * 20 19 9 43 43 H 1.08999 * 109.40016 * 192.77398 * 23 5 4 44 44 H 1.09000 * 109.40513 * 312.53490 * 23 5 4 45 45 H 1.09004 * 109.47395 * 300.99189 * 26 24 23 46 46 H 1.09001 * 109.47009 * 60.98442 * 26 24 23 47 47 H 1.09004 * 109.47463 * 180.98420 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0450 -0.7302 1.2451 5 7 3.5090 -0.6978 1.2711 6 6 4.0185 -0.9997 2.6154 7 6 3.6693 -2.4201 2.9777 8 8 2.9753 -3.0822 2.2354 9 7 4.1279 -2.9547 4.1268 10 6 3.7880 -4.3354 4.4794 11 6 2.5098 -4.3498 5.2775 12 1 2.0013 -3.4233 5.4996 13 6 1.9895 -5.5460 5.7243 14 7 2.6085 -6.6743 5.4534 15 14 0.4048 -5.5639 6.7130 16 1 -0.7525 -5.6902 5.7911 17 1 0.4190 -6.7159 7.6502 18 1 0.2879 -4.3001 7.4839 19 6 4.9664 -2.1550 5.0233 20 6 4.0789 -1.4108 6.0230 21 6 4.9213 -0.6068 6.9234 22 7 5.5703 0.0128 7.6194 23 6 4.1085 -1.5845 0.2712 24 6 3.9231 -0.9907 -1.1293 25 1 4.3974 -1.6353 -1.8694 26 6 4.5512 0.4033 -1.1839 27 16 2.1411 -0.8719 -1.4747 28 8 1.9343 -0.0617 -2.6237 29 1 -0.3633 0.5077 0.8936 30 1 -0.3634 0.5198 -0.8864 31 1 -0.3632 -1.0276 -0.0070 32 1 1.7059 -1.7660 1.2236 33 1 1.6560 -0.2415 2.1384 34 1 3.5662 -0.3189 3.3366 35 1 5.1015 -0.8769 2.6296 36 1 3.6548 -4.9204 3.5693 37 1 4.5928 -4.7671 5.0743 38 1 2.2426 -7.5158 5.7681 39 1 5.5388 -1.4345 4.4390 40 1 5.6502 -2.8106 5.5625 41 1 3.5065 -2.1313 6.6072 42 1 3.3950 -0.7551 5.4839 43 1 5.1726 -1.6973 0.4788 44 1 3.6261 -2.5609 0.3173 45 1 4.0800 1.0437 -0.4382 46 1 5.6188 0.3291 -0.9765 47 1 4.4026 0.8303 -2.1757 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331182873.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:36 Heat of formation + Delta-G solvation = -36.024762 kcal Electronic energy + Delta-G solvation = -28844.863079 eV Core-core repulsion = 24961.832535 eV Total energy + Delta-G solvation = -3883.030544 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.07329 -37.79381 -36.72354 -35.65837 -35.26834 -33.90612 -33.08364 -32.56324 -30.85314 -28.62156 -26.91133 -26.79879 -24.31511 -23.87740 -22.50415 -22.13208 -20.74503 -18.73657 -17.73129 -17.39886 -16.67374 -16.36275 -16.32853 -15.82502 -15.59851 -15.33724 -14.86295 -14.65815 -14.58077 -14.32550 -14.14509 -13.61348 -13.37334 -13.26213 -12.89659 -12.61572 -12.54062 -12.46115 -12.44095 -12.32754 -12.20071 -11.93574 -11.74963 -11.72732 -11.51803 -11.36895 -11.28584 -11.04596 -10.92190 -10.86160 -10.84906 -10.66666 -10.26998 -9.84225 -9.70040 -9.59885 -8.55637 -8.17027 -8.04292 -7.94791 -6.17583 -4.23153 1.57410 2.51526 2.75490 2.87267 3.12724 3.22600 3.29890 3.30810 3.56926 3.71776 3.82898 4.19822 4.33873 4.69646 4.78318 4.85816 4.94744 4.99773 5.04904 5.11891 5.18605 5.19941 5.23273 5.31010 5.45470 5.48906 5.51425 5.62547 5.68642 5.74379 5.85014 5.86230 5.89179 5.99660 6.03691 6.09823 6.12076 6.19612 6.74085 6.89997 7.00706 7.27078 7.32072 7.62740 7.77010 8.06690 8.13243 8.69535 8.84655 9.42982 10.90459 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010624 B = 0.003662 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.858974 B = 7644.637575 C = 8979.741370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.392 4.392 3 H 0.094 0.906 4 C 0.071 3.929 5 N -0.532 5.532 6 C 0.035 3.965 7 C 0.476 3.524 8 O -0.532 6.532 9 N -0.594 5.594 10 C 0.243 3.757 11 C -0.530 4.530 12 H 0.060 0.940 13 C 0.065 3.935 14 N -0.891 5.891 15 Si 0.894 3.106 16 H -0.279 1.279 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.121 3.879 20 C -0.052 4.052 21 C 0.218 3.782 22 N -0.451 5.451 23 C 0.071 3.929 24 C -0.396 4.396 25 H 0.117 0.883 26 C -0.133 4.133 27 S 1.230 4.770 28 O -0.858 6.858 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.046 0.954 37 H 0.033 0.967 38 H 0.264 0.736 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.130 0.870 42 H 0.104 0.896 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.067 0.933 46 H 0.057 0.943 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.576 9.356 -8.090 12.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.511 4.511 3 H 0.113 0.887 4 C -0.058 4.058 5 N -0.255 5.255 6 C -0.096 4.096 7 C 0.262 3.738 8 O -0.409 6.409 9 N -0.325 5.325 10 C 0.124 3.876 11 C -0.568 4.568 12 H 0.078 0.922 13 C -0.138 4.138 14 N -0.529 5.529 15 Si 0.722 3.278 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.005 4.005 20 C -0.094 4.094 21 C -0.100 4.100 22 N -0.129 5.129 23 C -0.058 4.058 24 C -0.514 4.514 25 H 0.135 0.865 26 C -0.191 4.191 27 S 1.429 4.571 28 O -0.853 6.853 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.064 0.936 37 H 0.051 0.949 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.106 0.894 41 H 0.148 0.852 42 H 0.122 0.878 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.086 0.914 46 H 0.076 0.924 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.802 9.857 -8.374 13.059 hybrid contribution -0.306 0.940 1.008 1.412 sum 1.496 10.796 -7.366 13.155 Atomic orbital electron populations 1.21409 0.91394 1.03102 1.02634 1.27296 1.02586 1.09087 1.12133 0.88717 1.21952 0.86510 1.01409 0.95908 1.61526 1.07628 1.52633 1.03690 1.22384 1.02170 0.93871 0.91210 1.21602 0.80699 0.89572 0.81913 1.90611 1.37529 1.62667 1.50133 1.48370 1.49300 1.15945 1.18927 1.19373 0.95872 0.75255 0.97055 1.21373 1.08324 0.93035 1.34102 0.92205 1.24911 0.97267 0.95438 0.96181 1.69917 1.39447 0.97864 1.45722 0.86572 0.83765 0.77647 0.79864 1.20518 1.21248 1.19889 1.21293 0.92416 0.95049 0.91762 1.19972 0.96330 0.97699 0.95351 1.29246 0.93736 0.93271 0.93745 1.81180 1.10211 1.10828 1.10647 1.21881 1.00680 0.95458 0.87776 1.27411 1.18709 1.02396 1.02913 0.86477 1.21634 1.01528 0.94400 1.01523 1.70762 0.89560 1.14106 0.82701 1.93047 1.80524 1.72621 1.39102 0.91422 0.92369 0.91091 0.89626 0.90383 0.88008 0.88194 0.93572 0.94933 0.92613 0.90772 0.89450 0.85168 0.87784 0.90489 0.89922 0.91382 0.92384 0.93134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.20 9.23 37.16 0.34 -0.86 16 2 C -0.39 -4.18 2.96 -26.60 -0.08 -4.26 16 3 H 0.09 1.10 7.57 -51.93 -0.39 0.71 16 4 C 0.07 0.79 4.09 -3.93 -0.02 0.77 16 5 N -0.53 -5.83 3.75 -236.48 -0.89 -6.71 16 6 C 0.03 0.37 4.43 -4.98 -0.02 0.35 16 7 C 0.48 7.08 7.09 -10.99 -0.08 7.00 16 8 O -0.53 -9.66 11.61 5.55 0.06 -9.59 16 9 N -0.59 -9.26 2.46 -175.06 -0.43 -9.69 16 10 C 0.24 5.18 5.20 -5.20 -0.03 5.15 16 11 C -0.53 -12.48 8.92 -34.44 -0.31 -12.78 16 12 H 0.06 1.36 7.42 -52.48 -0.39 0.97 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -23.89 13.29 55.43 0.74 -23.15 16 15 Si 0.89 19.60 29.54 -169.99 -5.02 14.58 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 17 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 19 C 0.12 1.38 5.23 -4.04 -0.02 1.36 16 20 C -0.05 -0.56 6.03 -29.52 -0.18 -0.74 16 21 C 0.22 2.65 15.43 -20.77 -0.32 2.33 16 22 N -0.45 -6.65 18.53 42.14 0.78 -5.87 16 23 C 0.07 0.77 4.19 -3.93 -0.02 0.75 16 24 C -0.40 -4.14 3.47 -26.60 -0.09 -4.23 16 25 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 26 C -0.13 -1.49 8.86 37.16 0.33 -1.16 16 27 S 1.23 13.61 12.69 -107.50 -1.36 12.25 16 28 O -0.86 -14.01 17.81 -35.23 -0.63 -14.63 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 1.09 5.98 -51.92 -0.31 0.78 16 33 H 0.08 0.85 7.83 -51.93 -0.41 0.44 16 34 H 0.10 0.92 7.19 -51.93 -0.37 0.55 16 35 H 0.10 0.88 7.03 -51.93 -0.37 0.52 16 36 H 0.05 1.14 7.42 -51.93 -0.39 0.76 16 37 H 0.03 0.72 7.89 -51.93 -0.41 0.31 16 38 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 39 H 0.07 0.63 6.30 -51.93 -0.33 0.31 16 40 H 0.09 1.01 7.89 -51.93 -0.41 0.60 16 41 H 0.13 1.66 7.26 -51.93 -0.38 1.28 16 42 H 0.10 0.94 7.38 -51.93 -0.38 0.55 16 43 H 0.08 0.80 7.90 -51.93 -0.41 0.39 16 44 H 0.08 1.01 5.99 -51.93 -0.31 0.70 16 45 H 0.07 0.79 6.69 -51.93 -0.35 0.44 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.05 0.62 7.99 -51.93 -0.41 0.21 16 LS Contribution 386.35 15.07 5.82 5.82 Total: -1.00 -32.88 386.35 -8.77 -41.65 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -7.26 Total: 0.12 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -0.58 Total: -4.78 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 0.20 Total: -45.42 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.56 Total: -24.23 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Atomic # 16 Polarization: 13.61 SS G_CDS: -1.36 Total: 12.25 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.88 -8.77 -41.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331182873.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.629 kcal (2) G-P(sol) polarization free energy of solvation -32.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds