Wall clock time and date at job start Sat Apr 11 2020 06:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.62658 * 2 1 4 4 C 1.53252 * 109.63383 * 120.38990 * 2 1 3 5 5 N 1.46467 * 109.86156 * 181.70697 * 4 2 1 6 6 C 1.46897 * 110.99954 * 162.23783 * 5 4 2 7 7 C 1.50693 * 109.47267 * 65.30970 * 6 5 4 8 8 O 1.21285 * 120.00125 * 354.74683 * 7 6 5 9 9 N 1.34781 * 120.00092 * 174.75745 * 7 6 5 10 10 C 1.46500 * 120.00070 * 179.97438 * 9 7 6 11 11 C 1.50692 * 109.46943 * 269.99448 * 10 9 7 12 12 H 1.08003 * 120.00650 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00014 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99696 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00034 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47222 * 90.00022 * 15 13 11 17 17 H 1.48506 * 109.47152 * 209.99921 * 15 13 11 18 18 H 1.48498 * 109.47193 * 329.99976 * 15 13 11 19 19 C 1.46502 * 119.99830 * 359.97438 * 9 7 6 20 20 C 1.53001 * 109.46957 * 90.00779 * 19 9 7 21 21 C 1.47201 * 109.47120 * 180.02562 * 20 19 9 22 22 N 8.62440 * 117.93537 * 89.90388 * 2 1 3 23 23 C 1.46469 * 112.55900 * 287.34953 * 5 4 2 24 24 C 1.53244 * 109.86351 * 72.65387 * 23 5 4 25 25 H 1.09002 * 109.79739 * 178.19203 * 24 23 5 26 26 C 1.53001 * 109.63114 * 57.69977 * 24 23 5 27 27 S 1.81894 * 109.63140 * 239.40724 * 2 1 3 28 28 O 1.42102 * 109.47342 * 73.14240 * 27 2 1 29 29 H 1.09004 * 109.47034 * 299.60400 * 1 2 3 30 30 H 1.08996 * 109.47452 * 59.61090 * 1 2 3 31 31 H 1.08997 * 109.46623 * 179.61012 * 1 2 3 32 32 H 1.09008 * 109.40162 * 61.59116 * 4 2 1 33 33 H 1.08999 * 109.40787 * 301.82894 * 4 2 1 34 34 H 1.09006 * 109.46776 * 305.30458 * 6 5 4 35 35 H 1.09001 * 109.47359 * 185.31086 * 6 5 4 36 36 H 1.09005 * 109.46716 * 29.99567 * 10 9 7 37 37 H 1.08999 * 109.46892 * 149.99334 * 10 9 7 38 38 H 0.97001 * 119.99632 * 179.97438 * 14 13 11 39 39 H 1.09003 * 109.47108 * 330.00674 * 19 9 7 40 40 H 1.08997 * 109.47287 * 210.00456 * 19 9 7 41 41 H 1.08993 * 109.47126 * 59.99248 * 20 19 9 42 42 H 1.09006 * 109.46927 * 300.00172 * 20 19 9 43 43 H 1.08999 * 109.40016 * 192.77398 * 23 5 4 44 44 H 1.09000 * 109.40513 * 312.53490 * 23 5 4 45 45 H 1.09004 * 109.47395 * 300.99189 * 26 24 23 46 46 H 1.09001 * 109.47009 * 60.98442 * 26 24 23 47 47 H 1.09004 * 109.47463 * 180.98420 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0450 -0.7302 1.2451 5 7 3.5090 -0.6978 1.2711 6 6 4.0185 -0.9997 2.6154 7 6 3.6693 -2.4201 2.9777 8 8 2.9753 -3.0822 2.2354 9 7 4.1279 -2.9547 4.1268 10 6 3.7880 -4.3354 4.4794 11 6 2.5098 -4.3498 5.2775 12 1 2.0013 -3.4233 5.4996 13 6 1.9895 -5.5460 5.7243 14 7 2.6085 -6.6743 5.4534 15 14 0.4048 -5.5639 6.7130 16 1 -0.7525 -5.6902 5.7911 17 1 0.4190 -6.7159 7.6502 18 1 0.2879 -4.3001 7.4839 19 6 4.9664 -2.1550 5.0233 20 6 4.0789 -1.4108 6.0230 21 6 4.9213 -0.6068 6.9234 22 7 5.5703 0.0128 7.6194 23 6 4.1085 -1.5845 0.2712 24 6 3.9231 -0.9907 -1.1293 25 1 4.3974 -1.6353 -1.8694 26 6 4.5512 0.4033 -1.1839 27 16 2.1411 -0.8719 -1.4747 28 8 1.9343 -0.0617 -2.6237 29 1 -0.3633 0.5077 0.8936 30 1 -0.3634 0.5198 -0.8864 31 1 -0.3632 -1.0276 -0.0070 32 1 1.7059 -1.7660 1.2236 33 1 1.6560 -0.2415 2.1384 34 1 3.5662 -0.3189 3.3366 35 1 5.1015 -0.8769 2.6296 36 1 3.6548 -4.9204 3.5693 37 1 4.5928 -4.7671 5.0743 38 1 2.2426 -7.5158 5.7681 39 1 5.5388 -1.4345 4.4390 40 1 5.6502 -2.8106 5.5625 41 1 3.5065 -2.1313 6.6072 42 1 3.3950 -0.7551 5.4839 43 1 5.1726 -1.6973 0.4788 44 1 3.6261 -2.5609 0.3173 45 1 4.0800 1.0437 -0.4382 46 1 5.6188 0.3291 -0.9765 47 1 4.4026 0.8303 -2.1757 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331182873.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:34 Heat of formation + Delta-G solvation = -58.400480 kcal Electronic energy + Delta-G solvation = -28845.833363 eV Core-core repulsion = 24961.832535 eV Total energy + Delta-G solvation = -3884.000828 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.16942 -38.81667 -37.77654 -36.76068 -36.48776 -34.77257 -34.74211 -33.60449 -32.01006 -29.91547 -28.10262 -27.77170 -25.39528 -25.07719 -23.84101 -23.00208 -21.68484 -19.86276 -18.93214 -18.44973 -17.97806 -17.68274 -17.36808 -16.76194 -16.69495 -16.40935 -16.06262 -15.80419 -15.69037 -15.43191 -15.19543 -14.73235 -14.42361 -14.28210 -14.09727 -13.80146 -13.57495 -13.46822 -13.43568 -13.36589 -13.25614 -13.12580 -12.89005 -12.78253 -12.66930 -12.62495 -12.46212 -12.35046 -12.18149 -12.01944 -11.86617 -11.75040 -11.65961 -11.46284 -10.94019 -10.54541 -10.48137 -9.34940 -9.11568 -9.02741 -8.07205 -6.17986 0.66973 1.48656 1.51401 1.58163 1.63326 1.75300 1.90963 2.03039 2.38487 2.54617 2.78369 2.91984 3.22700 3.26034 3.81966 3.85893 3.92682 4.09481 4.13554 4.21098 4.23442 4.28242 4.39148 4.48402 4.62401 4.67760 4.72535 4.80369 4.83668 4.89558 4.94523 5.00569 5.01802 5.14435 5.17357 5.22220 5.24862 5.25082 5.30596 5.47346 5.74877 5.92482 5.99906 6.10471 6.23474 6.67507 6.86914 6.95893 7.46683 7.63619 8.99718 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010624 B = 0.003662 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.858974 B = 7644.637575 C = 8979.741370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.381 4.381 3 H 0.088 0.912 4 C 0.073 3.927 5 N -0.529 5.529 6 C 0.043 3.957 7 C 0.473 3.527 8 O -0.569 6.569 9 N -0.597 5.597 10 C 0.259 3.741 11 C -0.522 4.522 12 H 0.070 0.930 13 C 0.011 3.989 14 N -0.931 5.931 15 Si 0.949 3.051 16 H -0.284 1.284 17 H -0.292 1.292 18 H -0.257 1.257 19 C 0.118 3.882 20 C -0.042 4.042 21 C 0.247 3.753 22 N -0.494 5.494 23 C 0.073 3.927 24 C -0.389 4.389 25 H 0.132 0.868 26 C -0.130 4.130 27 S 1.245 4.755 28 O -0.913 6.913 29 H 0.078 0.922 30 H 0.051 0.949 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.004 0.996 37 H 0.019 0.981 38 H 0.261 0.739 39 H 0.115 0.885 40 H 0.082 0.918 41 H 0.113 0.887 42 H 0.132 0.868 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.072 0.928 47 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.793 11.327 -7.314 13.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.501 4.501 3 H 0.107 0.893 4 C -0.056 4.056 5 N -0.251 5.251 6 C -0.088 4.088 7 C 0.261 3.739 8 O -0.449 6.449 9 N -0.328 5.328 10 C 0.138 3.862 11 C -0.561 4.561 12 H 0.088 0.912 13 C -0.187 4.187 14 N -0.572 5.572 15 Si 0.776 3.224 16 H -0.210 1.210 17 H -0.218 1.218 18 H -0.181 1.181 19 C -0.007 4.007 20 C -0.083 4.083 21 C -0.070 4.070 22 N -0.172 5.172 23 C -0.056 4.056 24 C -0.509 4.509 25 H 0.149 0.851 26 C -0.188 4.188 27 S 1.447 4.553 28 O -0.908 6.908 29 H 0.097 0.903 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.022 0.978 37 H 0.037 0.963 38 H 0.070 0.930 39 H 0.133 0.867 40 H 0.101 0.899 41 H 0.131 0.869 42 H 0.150 0.850 43 H 0.107 0.893 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.091 0.909 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 2.023 11.877 -7.604 14.247 hybrid contribution -0.325 0.318 0.769 0.893 sum 1.698 12.196 -6.836 14.083 Atomic orbital electron populations 1.21476 0.90538 1.03961 1.02913 1.27174 1.03378 1.08385 1.11189 0.89336 1.21927 0.86772 1.00592 0.96306 1.61606 1.07444 1.52083 1.03941 1.22569 1.04167 0.90740 0.91355 1.22493 0.79592 0.91045 0.80817 1.90615 1.39131 1.64038 1.51133 1.48233 1.50148 1.14227 1.20157 1.18779 0.94731 0.78308 0.94426 1.21772 1.08658 0.93011 1.32691 0.91198 1.25677 1.00058 0.95449 0.97564 1.70044 1.41162 0.98352 1.47609 0.85683 0.80240 0.77998 0.78495 1.21008 1.21807 1.18115 1.21523 0.92002 0.95311 0.91866 1.19918 0.96093 0.97495 0.94832 1.29264 0.92692 0.92201 0.92857 1.81227 1.11607 1.12504 1.11900 1.21860 1.01218 0.94748 0.87776 1.27347 1.17619 1.02558 1.03348 0.85059 1.21600 1.02467 0.94289 1.00431 1.70233 0.90000 1.13278 0.81795 1.92961 1.82011 1.73888 1.41957 0.90263 0.92971 0.90033 0.91135 0.89345 0.85267 0.85291 0.97774 0.96284 0.93010 0.86727 0.89914 0.86910 0.84975 0.89288 0.91328 0.91702 0.90944 0.94792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 9.23 71.98 0.66 -1.64 16 2 C -0.38 -7.56 2.96 30.68 0.09 -7.47 16 3 H 0.09 1.91 7.57 -2.39 -0.02 1.89 16 4 C 0.07 1.46 4.09 86.47 0.35 1.81 16 5 N -0.53 -9.93 3.75 -902.10 -3.38 -13.30 16 6 C 0.04 0.72 4.43 85.56 0.38 1.10 16 7 C 0.47 12.90 7.09 87.65 0.62 13.53 16 8 O -0.57 -20.21 11.61 -3.05 -0.04 -20.24 16 9 N -0.60 -17.43 2.46 -826.15 -2.03 -19.46 16 10 C 0.26 11.07 5.20 85.63 0.45 11.52 16 11 C -0.52 -24.35 8.92 25.60 0.23 -24.12 16 12 H 0.07 3.05 7.42 -2.91 -0.02 3.03 16 13 C 0.01 0.56 5.46 84.66 0.46 1.03 16 14 N -0.93 -51.02 13.29 21.45 0.28 -50.73 16 15 Si 0.95 39.92 29.54 68.60 2.03 41.95 16 16 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 17 H -0.29 -12.43 7.11 99.48 0.71 -11.73 16 18 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 19 C 0.12 2.30 5.23 86.38 0.45 2.75 16 20 C -0.04 -0.76 6.03 28.79 0.17 -0.59 16 21 C 0.25 5.26 15.43 89.45 1.38 6.64 16 22 N -0.49 -13.46 18.53 20.00 0.37 -13.09 16 23 C 0.07 1.42 4.19 86.47 0.36 1.78 16 24 C -0.39 -7.53 3.47 30.68 0.11 -7.42 16 25 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 26 C -0.13 -2.66 8.86 71.98 0.64 -2.03 16 27 S 1.25 27.03 12.69 -56.49 -0.72 26.31 16 28 O -0.91 -30.12 17.81 -148.98 -2.65 -32.77 16 29 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.07 1.70 5.98 -2.38 -0.01 1.68 16 33 H 0.09 1.62 7.83 -2.39 -0.02 1.60 16 34 H 0.13 1.57 7.19 -2.38 -0.02 1.55 16 35 H 0.13 1.52 7.03 -2.39 -0.02 1.50 16 36 H 0.00 0.21 7.42 -2.38 -0.02 0.19 16 37 H 0.02 0.86 7.89 -2.39 -0.02 0.84 16 38 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 39 H 0.11 1.36 6.30 -2.39 -0.02 1.35 16 40 H 0.08 1.73 7.89 -2.39 -0.02 1.71 16 41 H 0.11 2.58 7.26 -2.39 -0.02 2.56 16 42 H 0.13 1.71 7.38 -2.38 -0.02 1.69 16 43 H 0.09 1.56 7.90 -2.39 -0.02 1.55 16 44 H 0.07 1.60 5.99 -2.39 -0.01 1.59 16 45 H 0.06 1.37 6.69 -2.38 -0.02 1.35 16 46 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.03 0.80 7.99 -2.38 -0.02 0.79 16 Total: -1.00 -73.34 386.35 1.20 -72.14 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 0.97 Total: 12.32 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: 6.36 Total: -3.11 kcal Atomic # 7 Polarization: -91.84 SS G_CDS: -4.75 Total: -96.59 kcal Atomic # 8 Polarization: -50.33 SS G_CDS: -2.69 Total: -53.02 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Atomic # 16 Polarization: 27.03 SS G_CDS: -0.72 Total: 26.31 kcal Total: -73.34 1.20 -72.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331182873.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.736 kcal (2) G-P(sol) polarization free energy of solvation -73.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds