Wall clock time and date at job start Sat Apr 11 2020 06:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.79445 * 2 1 4 4 C 1.53256 * 109.63194 * 239.50808 * 2 1 3 5 5 N 1.46466 * 109.86039 * 178.29161 * 4 2 1 6 6 C 1.46898 * 110.99975 * 197.76472 * 5 4 2 7 7 C 1.50696 * 109.46979 * 170.00107 * 6 5 4 8 8 O 1.21279 * 120.00750 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99888 * 179.97438 * 7 6 5 10 10 C 1.46506 * 120.00058 * 179.97438 * 9 7 6 11 11 C 1.50703 * 109.47289 * 270.00143 * 10 9 7 12 12 H 1.07994 * 119.99399 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99789 * 179.97438 * 11 10 9 14 14 N 1.31518 * 120.00144 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99733 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46632 * 90.00476 * 15 13 11 17 17 H 1.48496 * 109.46690 * 210.00029 * 15 13 11 18 18 H 1.48498 * 109.47171 * 330.00226 * 15 13 11 19 19 C 1.46493 * 120.00131 * 0.02562 * 9 7 6 20 20 C 1.53000 * 109.47156 * 269.99999 * 19 9 7 21 21 C 1.47205 * 109.47360 * 180.02562 * 20 19 9 22 22 N 8.55090 * 108.81039 * 241.62437 * 2 1 3 23 23 C 1.46470 * 112.56010 * 72.65714 * 5 4 2 24 24 C 1.53252 * 109.85974 * 287.34364 * 23 5 4 25 25 H 1.09000 * 109.79276 * 302.19855 * 24 23 5 26 26 C 1.52999 * 109.63408 * 181.70505 * 24 23 5 27 27 S 1.81896 * 109.63034 * 120.49361 * 2 1 3 28 28 O 1.42104 * 109.47002 * 55.17075 * 27 2 1 29 29 H 1.08999 * 109.47426 * 180.49315 * 1 2 3 30 30 H 1.08997 * 109.47078 * 300.49588 * 1 2 3 31 31 H 1.09004 * 109.47219 * 60.49081 * 1 2 3 32 32 H 1.09000 * 109.40578 * 58.17167 * 4 2 1 33 33 H 1.08997 * 109.40566 * 298.41124 * 4 2 1 34 34 H 1.08997 * 109.47035 * 49.99858 * 6 5 4 35 35 H 1.09001 * 109.47183 * 290.00259 * 6 5 4 36 36 H 1.09001 * 109.47060 * 30.00593 * 10 9 7 37 37 H 1.09004 * 109.47073 * 150.00082 * 10 9 7 38 38 H 0.96997 * 119.99752 * 179.97438 * 14 13 11 39 39 H 1.09006 * 109.47571 * 29.99644 * 19 9 7 40 40 H 1.09005 * 109.47727 * 150.00102 * 19 9 7 41 41 H 1.09001 * 109.47195 * 299.99586 * 20 19 9 42 42 H 1.08997 * 109.47280 * 59.99767 * 20 19 9 43 43 H 1.09004 * 109.40885 * 47.45943 * 23 5 4 44 44 H 1.08995 * 109.40895 * 167.22534 * 23 5 4 45 45 H 1.09004 * 109.47124 * 300.98764 * 26 24 23 46 46 H 1.09010 * 109.46601 * 60.98288 * 26 24 23 47 47 H 1.08991 * 109.47294 * 180.98533 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8991 1.0256 0.0000 4 6 2.0449 -0.7324 -1.2438 5 7 3.5089 -0.7001 -1.2699 6 6 4.0184 -1.0043 -2.6137 7 6 5.4982 -0.7240 -2.6652 8 8 6.0721 -0.3119 -1.6795 9 7 6.1841 -0.9323 -3.8066 10 6 7.6226 -0.6592 -3.8568 11 6 7.8483 0.7699 -4.2786 12 1 7.0046 1.4107 -4.4877 13 6 9.1319 1.2593 -4.3963 14 7 10.1593 0.4790 -4.1410 15 14 9.4116 3.0306 -4.9197 16 1 9.4559 3.9009 -3.7173 17 1 10.6992 3.1326 -5.6523 18 1 8.3021 3.4661 -5.8055 19 6 5.4911 -1.4305 -4.9971 20 6 5.5204 -2.9602 -5.0015 21 6 4.8246 -3.4610 -6.1982 22 7 4.2871 -3.8468 -7.1217 23 6 4.1084 -1.5851 -0.2685 24 6 3.9230 -0.9889 1.1310 25 1 4.3713 0.0039 1.1716 26 6 4.5879 -1.8958 2.1684 27 16 2.1410 -0.8694 1.4763 28 8 1.5794 -2.1739 1.5241 29 1 -0.3634 -1.0276 0.0088 30 1 -0.3633 0.5215 0.8855 31 1 -0.3634 0.5062 -0.8944 32 1 1.6559 -0.2453 -2.1380 33 1 1.7058 -1.7681 -1.2206 34 1 3.5049 -0.3818 -3.3464 35 1 3.8395 -2.0553 -2.8408 36 1 8.0577 -0.8201 -2.8704 37 1 8.0947 -1.3291 -4.5757 38 1 11.0622 0.8233 -4.2242 39 1 4.4566 -1.0871 -4.9859 40 1 5.9889 -1.0551 -5.8912 41 1 6.5548 -3.3038 -5.0129 42 1 5.0226 -3.3358 -4.1076 43 1 3.6261 -2.5616 -0.3129 44 1 5.1725 -1.6984 -0.4759 45 1 4.1427 -2.8896 2.1208 46 1 5.6554 -1.9656 1.9590 47 1 4.4395 -1.4785 3.1642 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331182874.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:41 Heat of formation + Delta-G solvation = -34.592977 kcal Electronic energy + Delta-G solvation = -28469.081958 eV Core-core repulsion = 24586.113501 eV Total energy + Delta-G solvation = -3882.968457 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -39.78152 -37.88324 -36.84414 -35.69452 -35.26140 -34.22362 -33.07897 -32.60420 -30.89679 -28.75262 -26.91705 -26.80431 -24.30885 -24.01276 -22.43376 -21.55104 -21.17284 -18.58727 -17.86271 -17.66926 -16.79440 -16.49358 -16.13966 -15.97349 -15.63421 -15.53344 -14.78103 -14.65265 -14.59177 -14.30690 -13.90188 -13.69517 -13.53052 -13.15491 -13.05040 -12.94972 -12.58988 -12.49904 -12.43539 -12.37971 -12.35094 -12.02770 -11.89257 -11.83498 -11.41613 -11.36237 -11.30486 -11.22395 -11.05444 -11.02251 -10.86741 -10.65470 -10.21854 -9.76486 -9.66292 -9.11239 -8.50097 -8.44909 -8.14773 -7.87819 -6.11826 -4.16484 1.50890 2.46580 2.67154 2.75614 3.20211 3.27690 3.32957 3.34270 3.37450 3.69005 3.84541 4.16926 4.39399 4.52047 4.66434 4.84738 4.88454 4.92036 5.02793 5.04312 5.08952 5.19507 5.21555 5.24371 5.26899 5.35247 5.38272 5.44995 5.53573 5.54997 5.65624 5.76022 5.77310 5.90296 5.96184 6.00931 6.07723 6.12885 6.68358 6.93068 6.98018 7.30537 7.38625 7.51872 7.84208 8.13625 8.20158 8.80215 8.94598 9.49305 10.96305 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009909 B = 0.003456 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2824.921801 B = 8100.987820 C = 9598.365085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.399 4.399 3 H 0.133 0.867 4 C 0.064 3.936 5 N -0.532 5.532 6 C 0.038 3.962 7 C 0.508 3.492 8 O -0.512 6.512 9 N -0.598 5.598 10 C 0.246 3.754 11 C -0.528 4.528 12 H 0.058 0.942 13 C 0.063 3.937 14 N -0.894 5.894 15 Si 0.897 3.103 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.118 3.882 20 C -0.051 4.051 21 C 0.216 3.784 22 N -0.444 5.444 23 C 0.060 3.940 24 C -0.388 4.388 25 H 0.136 0.864 26 C -0.129 4.129 27 S 1.225 4.775 28 O -0.850 6.850 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.037 0.963 34 H 0.102 0.898 35 H 0.056 0.944 36 H 0.046 0.954 37 H 0.034 0.966 38 H 0.264 0.736 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.118 0.882 42 H 0.103 0.897 43 H 0.029 0.971 44 H 0.107 0.893 45 H 0.056 0.944 46 H 0.071 0.929 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.782 -1.684 10.152 18.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.516 4.516 3 H 0.151 0.849 4 C -0.064 4.064 5 N -0.256 5.256 6 C -0.093 4.093 7 C 0.294 3.706 8 O -0.387 6.387 9 N -0.330 5.330 10 C 0.128 3.872 11 C -0.567 4.567 12 H 0.076 0.924 13 C -0.139 4.139 14 N -0.533 5.533 15 Si 0.725 3.275 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.009 4.009 20 C -0.092 4.092 21 C -0.102 4.102 22 N -0.121 5.121 23 C -0.068 4.068 24 C -0.506 4.506 25 H 0.154 0.846 26 C -0.188 4.188 27 S 1.424 4.576 28 O -0.845 6.845 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.055 0.945 34 H 0.120 0.880 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.052 0.948 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.114 0.886 41 H 0.136 0.864 42 H 0.121 0.879 43 H 0.047 0.953 44 H 0.125 0.875 45 H 0.075 0.925 46 H 0.090 0.910 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.428 -1.925 10.212 19.439 hybrid contribution 0.730 -0.705 -2.303 2.516 sum -15.698 -2.629 7.909 17.774 Atomic orbital electron populations 1.21432 0.91759 1.02546 1.02974 1.27394 1.02208 1.10267 1.11769 0.84886 1.22019 0.87140 0.98637 0.98626 1.60720 1.05398 1.55086 1.04419 1.22068 0.95507 1.00539 0.91150 1.20109 0.87939 0.78916 0.83660 1.90665 1.69982 1.43765 1.34253 1.48232 1.11964 1.63765 1.09074 1.19342 0.72679 0.96348 0.98851 1.21402 0.92270 0.96704 1.46312 0.92365 1.24909 0.95879 0.97885 0.95245 1.69918 0.98609 1.35878 1.48872 0.86516 0.77494 0.84829 0.78694 1.20505 1.21199 1.19938 1.21300 0.98366 0.89734 0.91504 1.19904 1.01360 0.98189 0.89762 1.29095 0.93310 0.93310 0.94467 1.81213 1.10270 1.09227 1.11412 1.22162 1.03276 0.91756 0.89588 1.27305 1.17335 1.06717 0.99266 0.84606 1.21436 1.01792 0.98543 0.97004 1.70262 0.86191 0.99081 1.02099 1.93081 1.71916 1.39066 1.80464 0.92334 0.91375 0.91589 0.90006 0.94500 0.88017 0.92568 0.93588 0.94790 0.92665 0.90835 0.88595 0.86399 0.87889 0.95281 0.87538 0.92538 0.91041 0.91570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.99 9.19 37.16 0.34 -0.65 16 2 C -0.40 -3.57 3.32 -26.60 -0.09 -3.66 16 3 H 0.13 1.02 8.14 -51.93 -0.42 0.60 16 4 C 0.06 0.72 4.72 -3.93 -0.02 0.70 16 5 N -0.53 -7.11 4.17 -236.48 -0.99 -8.09 16 6 C 0.04 0.51 4.00 -4.98 -0.02 0.49 16 7 C 0.51 9.03 7.21 -10.99 -0.08 8.95 16 8 O -0.51 -11.20 13.91 5.56 0.08 -11.12 16 9 N -0.60 -10.59 2.46 -175.05 -0.43 -11.02 16 10 C 0.25 5.69 5.16 -5.19 -0.03 5.67 16 11 C -0.53 -13.84 9.39 -34.44 -0.32 -14.16 16 12 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 13 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -25.17 13.29 55.43 0.74 -24.43 16 15 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 18 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 19 C 0.12 1.53 5.17 -4.05 -0.02 1.51 16 20 C -0.05 -0.53 6.03 -29.52 -0.18 -0.71 16 21 C 0.22 2.64 15.43 -20.76 -0.32 2.32 16 22 N -0.44 -6.59 18.54 42.16 0.78 -5.81 16 23 C 0.06 0.83 4.24 -3.93 -0.02 0.82 16 24 C -0.39 -4.32 3.32 -26.60 -0.09 -4.41 16 25 H 0.14 1.46 8.14 -51.93 -0.42 1.04 16 26 C -0.13 -1.34 9.19 37.16 0.34 -1.00 16 27 S 1.23 11.42 12.61 -107.50 -1.36 10.06 16 28 O -0.85 -12.58 18.02 -35.23 -0.64 -13.21 16 29 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.82 7.76 -51.93 -0.40 0.42 16 33 H 0.04 0.46 7.91 -51.93 -0.41 0.05 16 34 H 0.10 1.19 7.10 -51.93 -0.37 0.82 16 35 H 0.06 0.64 7.18 -51.93 -0.37 0.26 16 36 H 0.05 1.22 7.42 -51.93 -0.39 0.83 16 37 H 0.03 0.78 8.07 -51.93 -0.42 0.37 16 38 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.07 0.80 6.44 -51.93 -0.33 0.46 16 40 H 0.10 1.34 8.07 -51.93 -0.42 0.92 16 41 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.10 0.92 7.22 -51.93 -0.37 0.54 16 43 H 0.03 0.42 7.92 -51.93 -0.41 0.01 16 44 H 0.11 1.74 5.61 -51.93 -0.29 1.44 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 395.76 15.07 5.96 5.96 Total: -1.00 -36.31 395.76 -9.00 -45.31 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -7.54 Total: -1.04 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -0.59 Total: -2.53 kcal Atomic # 7 Polarization: -49.47 SS G_CDS: 0.10 Total: -49.37 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.56 Total: -24.33 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 11.42 SS G_CDS: -1.36 Total: 10.06 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.31 -9.00 -45.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331182874.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.722 kcal (2) G-P(sol) polarization free energy of solvation -36.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds