Wall clock time and date at job start Sat Apr 11 2020 06:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.79445 * 2 1 4 4 C 1.53256 * 109.63194 * 239.50808 * 2 1 3 5 5 N 1.46466 * 109.86039 * 178.29161 * 4 2 1 6 6 C 1.46898 * 110.99975 * 197.76472 * 5 4 2 7 7 C 1.50696 * 109.46979 * 170.00107 * 6 5 4 8 8 O 1.21279 * 120.00750 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99888 * 179.97438 * 7 6 5 10 10 C 1.46506 * 120.00058 * 179.97438 * 9 7 6 11 11 C 1.50703 * 109.47289 * 270.00143 * 10 9 7 12 12 H 1.07994 * 119.99399 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99789 * 179.97438 * 11 10 9 14 14 N 1.31518 * 120.00144 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99733 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46632 * 90.00476 * 15 13 11 17 17 H 1.48496 * 109.46690 * 210.00029 * 15 13 11 18 18 H 1.48498 * 109.47171 * 330.00226 * 15 13 11 19 19 C 1.46493 * 120.00131 * 0.02562 * 9 7 6 20 20 C 1.53000 * 109.47156 * 269.99999 * 19 9 7 21 21 C 1.47205 * 109.47360 * 180.02562 * 20 19 9 22 22 N 8.55090 * 108.81039 * 241.62437 * 2 1 3 23 23 C 1.46470 * 112.56010 * 72.65714 * 5 4 2 24 24 C 1.53252 * 109.85974 * 287.34364 * 23 5 4 25 25 H 1.09000 * 109.79276 * 302.19855 * 24 23 5 26 26 C 1.52999 * 109.63408 * 181.70505 * 24 23 5 27 27 S 1.81896 * 109.63034 * 120.49361 * 2 1 3 28 28 O 1.42104 * 109.47002 * 55.17075 * 27 2 1 29 29 H 1.08999 * 109.47426 * 180.49315 * 1 2 3 30 30 H 1.08997 * 109.47078 * 300.49588 * 1 2 3 31 31 H 1.09004 * 109.47219 * 60.49081 * 1 2 3 32 32 H 1.09000 * 109.40578 * 58.17167 * 4 2 1 33 33 H 1.08997 * 109.40566 * 298.41124 * 4 2 1 34 34 H 1.08997 * 109.47035 * 49.99858 * 6 5 4 35 35 H 1.09001 * 109.47183 * 290.00259 * 6 5 4 36 36 H 1.09001 * 109.47060 * 30.00593 * 10 9 7 37 37 H 1.09004 * 109.47073 * 150.00082 * 10 9 7 38 38 H 0.96997 * 119.99752 * 179.97438 * 14 13 11 39 39 H 1.09006 * 109.47571 * 29.99644 * 19 9 7 40 40 H 1.09005 * 109.47727 * 150.00102 * 19 9 7 41 41 H 1.09001 * 109.47195 * 299.99586 * 20 19 9 42 42 H 1.08997 * 109.47280 * 59.99767 * 20 19 9 43 43 H 1.09004 * 109.40885 * 47.45943 * 23 5 4 44 44 H 1.08995 * 109.40895 * 167.22534 * 23 5 4 45 45 H 1.09004 * 109.47124 * 300.98764 * 26 24 23 46 46 H 1.09010 * 109.46601 * 60.98288 * 26 24 23 47 47 H 1.08991 * 109.47294 * 180.98533 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8991 1.0256 0.0000 4 6 2.0449 -0.7324 -1.2438 5 7 3.5089 -0.7001 -1.2699 6 6 4.0184 -1.0043 -2.6137 7 6 5.4982 -0.7240 -2.6652 8 8 6.0721 -0.3119 -1.6795 9 7 6.1841 -0.9323 -3.8066 10 6 7.6226 -0.6592 -3.8568 11 6 7.8483 0.7699 -4.2786 12 1 7.0046 1.4107 -4.4877 13 6 9.1319 1.2593 -4.3963 14 7 10.1593 0.4790 -4.1410 15 14 9.4116 3.0306 -4.9197 16 1 9.4559 3.9009 -3.7173 17 1 10.6992 3.1326 -5.6523 18 1 8.3021 3.4661 -5.8055 19 6 5.4911 -1.4305 -4.9971 20 6 5.5204 -2.9602 -5.0015 21 6 4.8246 -3.4610 -6.1982 22 7 4.2871 -3.8468 -7.1217 23 6 4.1084 -1.5851 -0.2685 24 6 3.9230 -0.9889 1.1310 25 1 4.3713 0.0039 1.1716 26 6 4.5879 -1.8958 2.1684 27 16 2.1410 -0.8694 1.4763 28 8 1.5794 -2.1739 1.5241 29 1 -0.3634 -1.0276 0.0088 30 1 -0.3633 0.5215 0.8855 31 1 -0.3634 0.5062 -0.8944 32 1 1.6559 -0.2453 -2.1380 33 1 1.7058 -1.7681 -1.2206 34 1 3.5049 -0.3818 -3.3464 35 1 3.8395 -2.0553 -2.8408 36 1 8.0577 -0.8201 -2.8704 37 1 8.0947 -1.3291 -4.5757 38 1 11.0622 0.8233 -4.2242 39 1 4.4566 -1.0871 -4.9859 40 1 5.9889 -1.0551 -5.8912 41 1 6.5548 -3.3038 -5.0129 42 1 5.0226 -3.3358 -4.1076 43 1 3.6261 -2.5616 -0.3129 44 1 5.1725 -1.6984 -0.4759 45 1 4.1427 -2.8896 2.1208 46 1 5.6554 -1.9656 1.9590 47 1 4.4395 -1.4785 3.1642 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331182874.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:38 Heat of formation + Delta-G solvation = -60.706725 kcal Electronic energy + Delta-G solvation = -28470.214335 eV Core-core repulsion = 24586.113501 eV Total energy + Delta-G solvation = -3884.100834 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -41.08671 -38.98241 -37.97511 -36.72973 -36.62923 -35.04879 -34.88618 -33.64758 -32.19819 -30.10851 -28.29812 -27.80951 -25.47784 -25.32065 -23.88305 -22.37793 -22.16755 -19.94991 -18.84797 -18.71828 -18.35688 -18.00077 -17.25165 -16.92101 -16.77518 -16.67692 -16.27951 -15.78745 -15.74371 -15.38054 -15.23769 -14.73574 -14.47318 -14.35688 -14.17783 -14.01860 -13.79727 -13.63716 -13.59734 -13.33614 -13.28572 -13.26774 -13.05422 -12.92023 -12.86163 -12.69287 -12.53958 -12.41649 -12.22624 -12.14456 -12.01702 -11.95948 -11.87353 -11.64354 -10.64784 -10.57630 -10.47302 -9.57447 -9.39873 -9.03685 -8.16630 -6.28767 0.71867 1.41739 1.43799 1.52428 1.61853 1.67418 1.76255 1.87034 2.14023 2.43869 2.67880 2.94585 3.07901 3.15602 3.64768 3.72905 3.81478 3.96074 4.01006 4.05654 4.10545 4.14341 4.22133 4.31111 4.38256 4.49852 4.55778 4.60373 4.65702 4.75451 4.78218 4.90505 4.96657 4.98955 5.09272 5.13119 5.18449 5.22534 5.29979 5.33808 5.61496 5.72650 5.88642 5.97300 6.14051 6.52824 6.74752 6.82364 7.36017 7.53254 8.90094 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009909 B = 0.003456 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2824.921801 B = 8100.987820 C = 9598.365085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.398 4.398 3 H 0.155 0.845 4 C 0.062 3.938 5 N -0.541 5.541 6 C 0.045 3.955 7 C 0.503 3.497 8 O -0.561 6.561 9 N -0.599 5.599 10 C 0.262 3.738 11 C -0.537 4.537 12 H 0.054 0.946 13 C 0.012 3.988 14 N -0.927 5.927 15 Si 0.957 3.043 16 H -0.281 1.281 17 H -0.281 1.281 18 H -0.264 1.264 19 C 0.114 3.886 20 C -0.038 4.038 21 C 0.245 3.755 22 N -0.486 5.486 23 C 0.063 3.937 24 C -0.395 4.395 25 H 0.142 0.858 26 C -0.130 4.130 27 S 1.287 4.713 28 O -0.903 6.903 29 H 0.038 0.962 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.022 0.978 34 H 0.128 0.872 35 H 0.081 0.919 36 H 0.004 0.996 37 H 0.031 0.969 38 H 0.265 0.735 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.121 0.879 42 H 0.127 0.873 43 H 0.016 0.984 44 H 0.076 0.924 45 H 0.041 0.959 46 H 0.058 0.942 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.018 -0.261 9.971 20.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.516 4.516 3 H 0.173 0.827 4 C -0.066 4.066 5 N -0.265 5.265 6 C -0.086 4.086 7 C 0.291 3.709 8 O -0.439 6.439 9 N -0.331 5.331 10 C 0.141 3.859 11 C -0.576 4.576 12 H 0.073 0.927 13 C -0.187 4.187 14 N -0.567 5.567 15 Si 0.783 3.217 16 H -0.207 1.207 17 H -0.207 1.207 18 H -0.188 1.188 19 C -0.011 4.011 20 C -0.080 4.080 21 C -0.073 4.073 22 N -0.164 5.164 23 C -0.065 4.065 24 C -0.513 4.513 25 H 0.160 0.840 26 C -0.188 4.188 27 S 1.486 4.514 28 O -0.899 6.899 29 H 0.057 0.943 30 H 0.112 0.888 31 H 0.097 0.903 32 H 0.119 0.881 33 H 0.040 0.960 34 H 0.146 0.854 35 H 0.099 0.901 36 H 0.022 0.978 37 H 0.049 0.951 38 H 0.074 0.926 39 H 0.123 0.877 40 H 0.105 0.895 41 H 0.139 0.861 42 H 0.145 0.855 43 H 0.035 0.965 44 H 0.095 0.905 45 H 0.060 0.940 46 H 0.077 0.923 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -18.696 -0.528 10.010 21.214 hybrid contribution 1.422 -1.135 -2.254 2.896 sum -17.274 -1.663 7.756 19.009 Atomic orbital electron populations 1.21485 0.90408 1.01889 1.04975 1.27456 1.03325 1.10859 1.10009 0.82730 1.22138 0.85502 0.98374 1.00603 1.60773 1.06730 1.54847 1.04196 1.22077 0.91849 1.02570 0.92062 1.20923 0.89738 0.77608 0.82622 1.90645 1.71377 1.45908 1.35938 1.48088 1.10160 1.63924 1.10886 1.18779 0.76009 0.95010 0.96063 1.21734 0.92175 0.98043 1.45632 0.92732 1.25713 0.95841 1.01720 0.95457 1.70027 0.98952 1.37634 1.50096 0.85564 0.77773 0.80113 0.78264 1.20744 1.20654 1.18788 1.21504 0.99309 0.91189 0.89071 1.19826 1.01765 0.96360 0.90004 1.29124 0.92145 0.92158 0.93845 1.81254 1.11862 1.10606 1.12702 1.22060 1.01308 0.91746 0.91425 1.27425 1.19237 1.06824 0.97819 0.84050 1.21463 1.00797 0.97979 0.98611 1.69674 0.83610 0.96535 1.01602 1.92976 1.72902 1.41868 1.82108 0.94277 0.88834 0.90276 0.88112 0.95968 0.85409 0.90076 0.97791 0.95062 0.92641 0.87698 0.89508 0.86117 0.85478 0.96547 0.90534 0.93966 0.92289 0.88485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.59 9.19 71.98 0.66 -0.93 16 2 C -0.40 -6.00 3.32 30.68 0.10 -5.90 16 3 H 0.15 1.77 8.14 -2.39 -0.02 1.75 16 4 C 0.06 1.23 4.72 86.47 0.41 1.63 16 5 N -0.54 -13.60 4.17 -902.09 -3.76 -17.36 16 6 C 0.04 1.09 4.00 85.56 0.34 1.43 16 7 C 0.50 17.68 7.21 87.66 0.63 18.31 16 8 O -0.56 -25.19 13.91 -3.02 -0.04 -25.23 16 9 N -0.60 -20.98 2.46 -826.14 -2.03 -23.01 16 10 C 0.26 12.44 5.16 85.63 0.44 12.88 16 11 C -0.54 -28.43 9.39 25.60 0.24 -28.19 16 12 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 13 C 0.01 0.64 5.46 84.65 0.46 1.10 16 14 N -0.93 -53.23 13.29 21.45 0.28 -52.94 16 15 Si 0.96 42.94 29.54 68.60 2.03 44.96 16 16 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 17 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 18 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 19 C 0.11 2.75 5.17 86.38 0.45 3.20 16 20 C -0.04 -0.73 6.03 28.79 0.17 -0.55 16 21 C 0.24 5.49 15.43 89.44 1.38 6.87 16 22 N -0.49 -13.76 18.54 20.01 0.37 -13.39 16 23 C 0.06 1.75 4.24 86.47 0.37 2.12 16 24 C -0.40 -8.64 3.32 30.68 0.10 -8.54 16 25 H 0.14 2.93 8.14 -2.39 -0.02 2.91 16 26 C -0.13 -2.72 9.19 71.98 0.66 -2.05 16 27 S 1.29 22.00 12.61 -56.49 -0.71 21.28 16 28 O -0.90 -26.11 18.02 -148.98 -2.69 -28.80 16 29 H 0.04 0.65 8.13 -2.39 -0.02 0.63 16 30 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.10 1.63 7.76 -2.39 -0.02 1.62 16 33 H 0.02 0.52 7.91 -2.39 -0.02 0.50 16 34 H 0.13 2.47 7.10 -2.39 -0.02 2.46 16 35 H 0.08 1.60 7.18 -2.39 -0.02 1.58 16 36 H 0.00 0.22 7.42 -2.39 -0.02 0.20 16 37 H 0.03 1.48 8.07 -2.38 -0.02 1.46 16 38 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 39 H 0.10 1.90 6.44 -2.38 -0.02 1.89 16 40 H 0.09 2.30 8.07 -2.38 -0.02 2.28 16 41 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.13 1.88 7.22 -2.39 -0.02 1.87 16 43 H 0.02 0.49 7.92 -2.39 -0.02 0.47 16 44 H 0.08 2.60 5.61 -2.39 -0.01 2.59 16 45 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 46 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 47 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -81.87 395.76 0.83 -81.04 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.96 Total: 12.06 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: 6.42 Total: 1.38 kcal Atomic # 7 Polarization: -101.56 SS G_CDS: -5.14 Total: -106.70 kcal Atomic # 8 Polarization: -51.30 SS G_CDS: -2.73 Total: -54.03 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: 22.00 SS G_CDS: -0.71 Total: 21.28 kcal Total: -81.87 0.83 -81.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331182874.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.335 kcal (2) G-P(sol) polarization free energy of solvation -81.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds