Wall clock time and date at job start Sat Apr 11 2020 06:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.55096 * 2 1 4 4 C 1.53039 * 109.55392 * 239.70738 * 2 1 3 5 5 C 1.53861 * 115.10037 * 198.86340 * 4 2 1 6 6 S 1.80113 * 113.14600 * 316.22440 * 5 4 2 7 7 O 1.42096 * 109.47328 * 201.51901 * 6 5 4 8 8 C 1.83704 * 102.74959 * 85.25952 * 6 5 4 9 9 C 1.45937 * 109.06451 * 292.67363 * 8 6 5 10 10 N 1.45681 * 109.55002 * 120.19430 * 2 1 3 11 11 C 1.46899 * 110.99915 * 346.45760 * 10 2 1 12 12 C 1.50697 * 109.46861 * 169.99564 * 11 10 2 13 13 O 1.21291 * 120.00365 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00055 * 179.97438 * 12 11 10 15 15 C 1.46505 * 120.00261 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.47064 * 270.00227 * 15 14 12 17 17 H 1.07996 * 119.99751 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00001 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99923 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 120.00006 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47093 * 90.00088 * 20 18 16 22 22 H 1.48495 * 109.46891 * 210.00496 * 20 18 16 23 23 H 1.48504 * 109.47189 * 330.00185 * 20 18 16 24 24 C 1.46496 * 120.00119 * 0.02562 * 14 12 11 25 25 C 1.53007 * 109.47224 * 269.99893 * 24 14 12 26 26 C 1.47201 * 109.47176 * 179.97438 * 25 24 14 27 27 N 7.01715 * 47.62716 * 82.23958 * 2 1 3 28 28 H 1.09003 * 109.47503 * 299.80600 * 1 2 3 29 29 H 1.09001 * 109.47287 * 59.80315 * 1 2 3 30 30 H 1.08992 * 109.47140 * 179.80169 * 1 2 3 31 31 H 1.09003 * 108.35420 * 320.31969 * 4 2 1 32 32 H 1.09000 * 108.36219 * 77.40347 * 4 2 1 33 33 H 1.08995 * 108.74889 * 77.17273 * 5 4 2 34 34 H 1.09001 * 108.74720 * 195.28368 * 5 4 2 35 35 H 1.09002 * 109.53790 * 52.54350 * 8 6 5 36 36 H 1.08996 * 109.54007 * 172.70955 * 8 6 5 37 37 H 1.09004 * 108.27983 * 302.54775 * 9 8 6 38 38 H 1.08997 * 108.28103 * 185.65704 * 9 8 6 39 39 H 1.08995 * 109.47159 * 50.00111 * 11 10 2 40 40 H 1.08992 * 109.47329 * 289.99544 * 11 10 2 41 41 H 1.09002 * 109.47068 * 30.00196 * 15 14 12 42 42 H 1.09001 * 109.47372 * 150.00283 * 15 14 12 43 43 H 0.97000 * 119.99684 * 180.02562 * 19 18 16 44 44 H 1.09006 * 109.47349 * 29.99742 * 24 14 12 45 45 H 1.09003 * 109.47665 * 149.99907 * 24 14 12 46 46 H 1.09002 * 109.46832 * 299.99655 * 25 24 14 47 47 H 1.08997 * 109.46824 * 59.99917 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0272 0.0000 4 6 2.0422 -0.7274 -1.2452 5 6 3.5031 -1.2040 -1.1680 6 16 4.6143 0.0295 -0.4698 7 8 5.9473 -0.2506 -0.8744 8 6 4.4506 -0.2542 1.3378 9 6 3.1036 0.1174 1.7586 10 7 2.0175 -0.6904 1.1866 11 6 0.9372 -0.8868 2.1625 12 6 1.4099 -1.8095 3.2561 13 8 2.5360 -2.2591 3.2258 14 7 0.5816 -2.1346 4.2684 15 6 1.0413 -3.0312 5.3319 16 6 0.7319 -4.4573 4.9553 17 1 0.2416 -4.6739 4.0178 18 6 1.0739 -5.4852 5.8081 19 7 0.8044 -6.7297 5.4792 20 14 1.9214 -5.1104 7.4301 21 1 0.8988 -4.9057 8.4872 22 1 2.7994 -6.2481 7.8043 23 1 2.7399 -3.8795 7.2881 24 6 -0.7784 -1.5912 4.3054 25 6 -0.7777 -0.2664 5.0708 26 6 -2.1441 0.2798 5.1074 27 7 -3.1992 0.7000 5.1366 28 1 -0.3634 0.5108 0.8917 29 1 -0.3634 0.5169 -0.8882 30 1 -0.3633 -1.0276 -0.0036 31 1 1.4068 -1.5954 -1.4214 32 1 1.9445 -0.0570 -2.0991 33 1 3.5463 -2.1028 -0.5528 34 1 3.8437 -1.4535 -2.1729 35 1 4.6239 -1.3075 1.5586 36 1 5.1813 0.3548 1.8701 37 1 2.9353 1.1592 1.4856 38 1 3.0513 0.0408 2.8446 39 1 0.0731 -1.3264 1.6644 40 1 0.6579 0.0745 2.5936 41 1 2.1170 -2.9157 5.4649 42 1 0.5313 -2.7825 6.2626 43 1 1.0447 -7.4529 6.0794 44 1 -1.1301 -1.4225 3.2875 45 1 -1.4392 -2.2994 4.8054 46 1 -0.4261 -0.4351 6.0887 47 1 -0.1170 0.4417 4.5708 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331881160.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:44 Heat of formation + Delta-G solvation = -14.299434 kcal Electronic energy + Delta-G solvation = -28835.697951 eV Core-core repulsion = 24953.609488 eV Total energy + Delta-G solvation = -3882.088463 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.16645 -38.43895 -36.94148 -35.62745 -35.35835 -33.68799 -32.90467 -32.16040 -31.07309 -29.51428 -28.35596 -26.63453 -24.24166 -23.91486 -22.62672 -22.19108 -20.05568 -18.57118 -17.85014 -17.38081 -16.97800 -16.85214 -16.27040 -16.01020 -15.72364 -15.32326 -15.15154 -14.76453 -14.56954 -14.15696 -14.08528 -13.85620 -13.62845 -13.25051 -13.17536 -12.89021 -12.81232 -12.65510 -12.56834 -12.36270 -12.26020 -12.12262 -11.81856 -11.74826 -11.70032 -11.34337 -11.27211 -11.12579 -10.91335 -10.90283 -10.80811 -10.60342 -10.19711 -9.84047 -9.61670 -9.11745 -8.65498 -8.49916 -8.15814 -7.93645 -6.14487 -4.14057 1.56852 2.54690 2.60658 2.68922 3.16943 3.21311 3.28604 3.32244 3.37248 3.73756 3.80908 4.09687 4.33481 4.46615 4.61047 4.79333 4.84382 4.88476 4.95062 4.99429 5.07920 5.14438 5.17625 5.21842 5.24655 5.33002 5.39036 5.40791 5.49481 5.60244 5.67792 5.72837 5.78860 5.86231 5.94888 5.98576 6.06090 6.21310 6.48758 6.78375 6.87361 6.95432 7.17127 7.45317 7.53239 8.05704 8.39317 8.83543 8.90435 9.45137 10.98852 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009590 B = 0.003884 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2918.941826 B = 7208.077478 C = 9064.435067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.059 3.941 3 H 0.073 0.927 4 C -0.068 4.068 5 C -0.430 4.430 6 S 1.213 4.787 7 O -0.866 6.866 8 C -0.410 4.410 9 C 0.076 3.924 10 N -0.507 5.507 11 C 0.027 3.973 12 C 0.507 3.493 13 O -0.513 6.513 14 N -0.595 5.595 15 C 0.217 3.783 16 C -0.531 4.531 17 H 0.075 0.925 18 C 0.073 3.927 19 N -0.896 5.896 20 Si 0.873 3.127 21 H -0.275 1.275 22 H -0.284 1.284 23 H -0.264 1.264 24 C 0.117 3.883 25 C -0.051 4.051 26 C 0.215 3.785 27 N -0.441 5.441 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.049 0.951 38 H 0.075 0.925 39 H 0.113 0.887 40 H 0.063 0.937 41 H 0.043 0.957 42 H 0.027 0.973 43 H 0.265 0.735 44 H 0.077 0.923 45 H 0.096 0.904 46 H 0.115 0.885 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.654 20.340 -9.816 22.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.050 4.050 3 H 0.091 0.909 4 C -0.108 4.108 5 C -0.569 4.569 6 S 1.412 4.588 7 O -0.861 6.861 8 C -0.549 4.549 9 C -0.053 4.053 10 N -0.231 5.231 11 C -0.103 4.103 12 C 0.293 3.707 13 O -0.387 6.387 14 N -0.328 5.328 15 C 0.096 3.904 16 C -0.569 4.569 17 H 0.093 0.907 18 C -0.129 4.129 19 N -0.534 5.534 20 Si 0.700 3.300 21 H -0.201 1.201 22 H -0.210 1.210 23 H -0.188 1.188 24 C -0.009 4.009 25 C -0.092 4.092 26 C -0.104 4.104 27 N -0.118 5.118 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.120 0.880 34 H 0.114 0.886 35 H 0.123 0.877 36 H 0.129 0.871 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.130 0.870 40 H 0.081 0.919 41 H 0.061 0.939 42 H 0.044 0.956 43 H 0.075 0.925 44 H 0.096 0.904 45 H 0.115 0.885 46 H 0.133 0.867 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.792 20.668 -10.346 23.183 hybrid contribution 1.021 -1.820 1.763 2.732 sum -0.771 18.848 -8.583 20.725 Atomic orbital electron populations 1.22303 0.94536 1.02990 1.02596 1.22100 0.95342 0.96530 0.90988 0.90891 1.21136 0.92603 1.00666 0.96366 1.27317 1.06422 1.14846 1.08277 1.69914 0.89453 1.11392 0.88017 1.93095 1.32069 1.83614 1.77321 1.26265 1.01426 1.09193 1.17974 1.20392 0.89938 0.93946 1.00994 1.62130 1.08450 1.47175 1.05391 1.22414 0.95624 0.98799 0.93483 1.20296 0.85836 0.82217 0.82392 1.90700 1.19476 1.53140 1.75358 1.47892 1.11878 1.47418 1.25584 1.19690 0.96348 0.89486 0.84831 1.21301 1.40051 0.88765 1.06785 0.90685 1.24857 0.95100 0.94871 0.98108 1.69889 1.47271 0.98949 1.37263 0.86900 0.80217 0.78741 0.84172 1.20076 1.21009 1.18829 1.21323 0.86236 0.92787 1.00601 1.19902 0.85322 0.98484 1.05500 1.29059 0.94882 0.93331 0.93081 1.81233 1.12117 1.09522 1.08956 0.91793 0.91620 0.91226 0.91292 0.91499 0.87981 0.88575 0.87686 0.87093 0.93303 0.90678 0.86969 0.91889 0.93948 0.95558 0.92520 0.90420 0.88533 0.86687 0.87636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.95 7.70 37.16 0.29 -0.66 16 2 C 0.06 0.41 2.52 -68.35 -0.17 0.23 16 3 H 0.07 0.30 6.67 -51.93 -0.35 -0.04 16 4 C -0.07 -0.51 5.36 -26.26 -0.14 -0.65 16 5 C -0.43 -4.39 5.72 37.61 0.22 -4.18 16 6 S 1.21 12.15 13.02 -107.50 -1.40 10.75 16 7 O -0.87 -14.64 18.14 -35.23 -0.64 -15.28 16 8 C -0.41 -4.61 6.37 33.81 0.22 -4.39 16 9 C 0.08 0.74 4.00 -7.14 -0.03 0.71 16 10 N -0.51 -5.28 3.75 -233.18 -0.87 -6.15 16 11 C 0.03 0.29 2.61 -4.98 -0.01 0.28 16 12 C 0.51 8.25 7.07 -10.99 -0.08 8.17 16 13 O -0.51 -10.85 14.82 5.55 0.08 -10.77 16 14 N -0.60 -9.68 2.46 -175.05 -0.43 -10.11 16 15 C 0.22 4.59 4.23 -5.19 -0.02 4.57 16 16 C -0.53 -14.10 9.94 -34.44 -0.34 -14.45 16 17 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 18 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 19 N -0.90 -26.78 13.96 55.43 0.77 -26.00 16 20 Si 0.87 20.44 27.47 -169.99 -4.67 15.78 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.26 -5.94 6.54 56.52 0.37 -5.57 16 24 C 0.12 1.33 5.17 -4.04 -0.02 1.31 16 25 C -0.05 -0.41 6.03 -29.51 -0.18 -0.59 16 26 C 0.21 2.18 15.43 -20.76 -0.32 1.86 16 27 N -0.44 -5.74 18.54 42.16 0.78 -4.96 16 28 H 0.06 0.31 6.70 -51.93 -0.35 -0.04 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.48 6.94 -51.93 -0.36 0.12 16 31 H 0.07 0.59 7.91 -51.93 -0.41 0.18 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.10 1.36 8.11 -51.73 -0.42 0.94 16 34 H 0.10 0.97 8.14 -51.72 -0.42 0.54 16 35 H 0.10 1.60 8.14 -51.93 -0.42 1.17 16 36 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.05 0.28 6.80 -51.93 -0.35 -0.07 16 38 H 0.07 0.86 6.50 -51.93 -0.34 0.53 16 39 H 0.11 1.07 4.92 -51.93 -0.26 0.81 16 40 H 0.06 0.45 6.60 -51.93 -0.34 0.11 16 41 H 0.04 0.99 6.48 -51.93 -0.34 0.66 16 42 H 0.03 0.51 7.50 -51.93 -0.39 0.12 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.08 0.70 6.44 -51.93 -0.33 0.37 16 45 H 0.10 1.23 8.07 -51.93 -0.42 0.81 16 46 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.11 0.61 7.22 -51.93 -0.37 0.24 16 LS Contribution 382.60 15.07 5.77 5.77 Total: -1.00 -39.84 382.60 -8.46 -48.30 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -7.15 Total: -1.46 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -0.70 Total: -5.86 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: 0.25 Total: -47.23 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.56 Total: -26.05 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.67 Total: 15.78 kcal Atomic # 16 Polarization: 12.15 SS G_CDS: -1.40 Total: 10.75 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -39.84 -8.46 -48.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331881160.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.003 kcal (2) G-P(sol) polarization free energy of solvation -39.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds