Wall clock time and date at job start Sat Apr 11 2020 06:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.55096 * 2 1 4 4 C 1.53039 * 109.55392 * 239.70738 * 2 1 3 5 5 C 1.53861 * 115.10037 * 198.86340 * 4 2 1 6 6 S 1.80113 * 113.14600 * 316.22440 * 5 4 2 7 7 O 1.42096 * 109.47328 * 201.51901 * 6 5 4 8 8 C 1.83704 * 102.74959 * 85.25952 * 6 5 4 9 9 C 1.45937 * 109.06451 * 292.67363 * 8 6 5 10 10 N 1.45681 * 109.55002 * 120.19430 * 2 1 3 11 11 C 1.46899 * 110.99915 * 346.45760 * 10 2 1 12 12 C 1.50697 * 109.46861 * 169.99564 * 11 10 2 13 13 O 1.21291 * 120.00365 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00055 * 179.97438 * 12 11 10 15 15 C 1.46505 * 120.00261 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.47064 * 270.00227 * 15 14 12 17 17 H 1.07996 * 119.99751 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00001 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99923 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 120.00006 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47093 * 90.00088 * 20 18 16 22 22 H 1.48495 * 109.46891 * 210.00496 * 20 18 16 23 23 H 1.48504 * 109.47189 * 330.00185 * 20 18 16 24 24 C 1.46496 * 120.00119 * 0.02562 * 14 12 11 25 25 C 1.53007 * 109.47224 * 269.99893 * 24 14 12 26 26 C 1.47201 * 109.47176 * 179.97438 * 25 24 14 27 27 N 7.01715 * 47.62716 * 82.23958 * 2 1 3 28 28 H 1.09003 * 109.47503 * 299.80600 * 1 2 3 29 29 H 1.09001 * 109.47287 * 59.80315 * 1 2 3 30 30 H 1.08992 * 109.47140 * 179.80169 * 1 2 3 31 31 H 1.09003 * 108.35420 * 320.31969 * 4 2 1 32 32 H 1.09000 * 108.36219 * 77.40347 * 4 2 1 33 33 H 1.08995 * 108.74889 * 77.17273 * 5 4 2 34 34 H 1.09001 * 108.74720 * 195.28368 * 5 4 2 35 35 H 1.09002 * 109.53790 * 52.54350 * 8 6 5 36 36 H 1.08996 * 109.54007 * 172.70955 * 8 6 5 37 37 H 1.09004 * 108.27983 * 302.54775 * 9 8 6 38 38 H 1.08997 * 108.28103 * 185.65704 * 9 8 6 39 39 H 1.08995 * 109.47159 * 50.00111 * 11 10 2 40 40 H 1.08992 * 109.47329 * 289.99544 * 11 10 2 41 41 H 1.09002 * 109.47068 * 30.00196 * 15 14 12 42 42 H 1.09001 * 109.47372 * 150.00283 * 15 14 12 43 43 H 0.97000 * 119.99684 * 180.02562 * 19 18 16 44 44 H 1.09006 * 109.47349 * 29.99742 * 24 14 12 45 45 H 1.09003 * 109.47665 * 149.99907 * 24 14 12 46 46 H 1.09002 * 109.46832 * 299.99655 * 25 24 14 47 47 H 1.08997 * 109.46824 * 59.99917 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0272 0.0000 4 6 2.0422 -0.7274 -1.2452 5 6 3.5031 -1.2040 -1.1680 6 16 4.6143 0.0295 -0.4698 7 8 5.9473 -0.2506 -0.8744 8 6 4.4506 -0.2542 1.3378 9 6 3.1036 0.1174 1.7586 10 7 2.0175 -0.6904 1.1866 11 6 0.9372 -0.8868 2.1625 12 6 1.4099 -1.8095 3.2561 13 8 2.5360 -2.2591 3.2258 14 7 0.5816 -2.1346 4.2684 15 6 1.0413 -3.0312 5.3319 16 6 0.7319 -4.4573 4.9553 17 1 0.2416 -4.6739 4.0178 18 6 1.0739 -5.4852 5.8081 19 7 0.8044 -6.7297 5.4792 20 14 1.9214 -5.1104 7.4301 21 1 0.8988 -4.9057 8.4872 22 1 2.7994 -6.2481 7.8043 23 1 2.7399 -3.8795 7.2881 24 6 -0.7784 -1.5912 4.3054 25 6 -0.7777 -0.2664 5.0708 26 6 -2.1441 0.2798 5.1074 27 7 -3.1992 0.7000 5.1366 28 1 -0.3634 0.5108 0.8917 29 1 -0.3634 0.5169 -0.8882 30 1 -0.3633 -1.0276 -0.0036 31 1 1.4068 -1.5954 -1.4214 32 1 1.9445 -0.0570 -2.0991 33 1 3.5463 -2.1028 -0.5528 34 1 3.8437 -1.4535 -2.1729 35 1 4.6239 -1.3075 1.5586 36 1 5.1813 0.3548 1.8701 37 1 2.9353 1.1592 1.4856 38 1 3.0513 0.0408 2.8446 39 1 0.0731 -1.3264 1.6644 40 1 0.6579 0.0745 2.5936 41 1 2.1170 -2.9157 5.4649 42 1 0.5313 -2.7825 6.2626 43 1 1.0447 -7.4529 6.0794 44 1 -1.1301 -1.4225 3.2875 45 1 -1.4392 -2.2994 4.8054 46 1 -0.4261 -0.4351 6.0887 47 1 -0.1170 0.4417 4.5708 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331881160.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:44 Heat of formation + Delta-G solvation = -46.371187 kcal Electronic energy + Delta-G solvation = -28837.088687 eV Core-core repulsion = 24953.609488 eV Total energy + Delta-G solvation = -3883.479199 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.15684 -39.37897 -37.88261 -36.80335 -36.59634 -34.82202 -34.38422 -33.05260 -32.25846 -30.47358 -29.55280 -27.69594 -25.17457 -24.94391 -23.79845 -23.22938 -20.79534 -19.68269 -19.14697 -18.50240 -18.24840 -17.93828 -17.28254 -16.84645 -16.67231 -16.40696 -16.14313 -15.87455 -15.66526 -15.40766 -15.09966 -14.90786 -14.54939 -14.48032 -14.09345 -14.02026 -13.70750 -13.67465 -13.52758 -13.48482 -13.34904 -13.20855 -12.97751 -12.78170 -12.65272 -12.42170 -12.37460 -12.07940 -12.02811 -11.93463 -11.75199 -11.70465 -11.50258 -11.39373 -10.82203 -10.77421 -10.40251 -9.39239 -9.25868 -9.02340 -8.29269 -6.33034 0.70663 1.34517 1.39924 1.48838 1.67441 1.76778 1.92165 1.97403 2.31272 2.34786 2.88092 2.98609 3.07138 3.24317 3.81449 3.91204 4.00282 4.10473 4.16491 4.21760 4.25597 4.31110 4.42694 4.51329 4.54908 4.65371 4.69532 4.74760 4.85383 4.91468 4.97559 5.04167 5.06125 5.08120 5.16328 5.19784 5.29507 5.31435 5.45692 5.50452 5.54213 5.69108 6.12132 6.30208 6.37325 6.68799 6.70891 6.83056 7.28908 7.61359 8.87942 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009590 B = 0.003884 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2918.941826 B = 7208.077478 C = 9064.435067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.055 3.945 3 H 0.115 0.885 4 C -0.069 4.069 5 C -0.430 4.430 6 S 1.291 4.709 7 O -0.936 6.936 8 C -0.411 4.411 9 C 0.071 3.929 10 N -0.542 5.542 11 C 0.040 3.960 12 C 0.497 3.503 13 O -0.574 6.574 14 N -0.599 5.599 15 C 0.225 3.775 16 C -0.529 4.529 17 H 0.028 0.972 18 C 0.006 3.994 19 N -0.952 5.952 20 Si 0.944 3.056 21 H -0.250 1.250 22 H -0.293 1.293 23 H -0.248 1.248 24 C 0.111 3.889 25 C -0.037 4.037 26 C 0.245 3.755 27 N -0.491 5.491 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.105 0.895 33 H 0.061 0.939 34 H 0.095 0.905 35 H 0.052 0.948 36 H 0.123 0.877 37 H 0.105 0.895 38 H 0.057 0.943 39 H 0.125 0.875 40 H 0.113 0.887 41 H 0.021 0.979 42 H 0.056 0.944 43 H 0.265 0.735 44 H 0.106 0.894 45 H 0.078 0.922 46 H 0.124 0.876 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.902 24.815 -9.670 26.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.052 4.052 3 H 0.133 0.867 4 C -0.108 4.108 5 C -0.569 4.569 6 S 1.492 4.508 7 O -0.932 6.932 8 C -0.549 4.549 9 C -0.057 4.057 10 N -0.268 5.268 11 C -0.090 4.090 12 C 0.286 3.714 13 O -0.452 6.452 14 N -0.330 5.330 15 C 0.102 3.898 16 C -0.568 4.568 17 H 0.046 0.954 18 C -0.191 4.191 19 N -0.592 5.592 20 Si 0.767 3.233 21 H -0.175 1.175 22 H -0.220 1.220 23 H -0.172 1.172 24 C -0.013 4.013 25 C -0.078 4.078 26 C -0.072 4.072 27 N -0.169 5.169 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.124 0.876 33 H 0.080 0.920 34 H 0.113 0.887 35 H 0.071 0.929 36 H 0.141 0.859 37 H 0.123 0.877 38 H 0.076 0.924 39 H 0.142 0.858 40 H 0.130 0.870 41 H 0.040 0.960 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.124 0.876 45 H 0.096 0.904 46 H 0.142 0.858 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.090 25.198 -10.214 27.364 hybrid contribution 1.370 -3.323 1.599 3.934 sum -1.721 21.875 -8.615 23.573 Atomic orbital electron populations 1.22314 0.93229 1.02383 1.04521 1.22326 0.96459 0.97923 0.88532 0.86713 1.21257 0.89630 1.01206 0.98753 1.27359 1.08853 1.13292 1.07366 1.68909 0.86299 1.09625 0.85935 1.92954 1.36392 1.85040 1.78833 1.26347 1.03610 1.06099 1.18858 1.20483 0.88613 0.96698 0.99941 1.61948 1.08997 1.49235 1.06581 1.22427 0.95550 0.99379 0.91676 1.21490 0.84915 0.82120 0.82906 1.90682 1.22262 1.55622 1.76623 1.47867 1.13859 1.46628 1.24687 1.19303 0.95549 0.87360 0.87540 1.21661 1.38450 0.92058 1.04645 0.95409 1.25869 0.96082 0.94507 1.02621 1.70073 1.49669 1.00322 1.39181 0.85763 0.79439 0.78613 0.79438 1.17451 1.21959 1.17186 1.21532 0.83113 0.93848 1.02833 1.19863 0.84759 0.97139 1.05997 1.29182 0.94558 0.91979 0.91490 1.81285 1.13579 1.11354 1.10710 0.90043 0.89592 0.93109 0.92782 0.87620 0.91974 0.88659 0.92852 0.85929 0.87716 0.92449 0.85755 0.86981 0.96049 0.92641 0.92663 0.87598 0.90363 0.85783 0.83864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.07 7.70 71.98 0.55 -0.52 16 2 C 0.06 0.52 2.52 45.16 0.11 0.63 16 3 H 0.12 0.15 6.67 -2.39 -0.02 0.14 16 4 C -0.07 -0.85 5.36 30.90 0.17 -0.69 16 5 C -0.43 -8.66 5.72 72.27 0.41 -8.25 16 6 S 1.29 24.62 13.02 -56.49 -0.74 23.88 16 7 O -0.94 -32.20 18.14 -148.98 -2.70 -34.90 16 8 C -0.41 -9.12 6.37 69.82 0.44 -8.68 16 9 C 0.07 1.19 4.00 84.13 0.34 1.53 16 10 N -0.54 -9.96 3.75 -891.64 -3.35 -13.31 16 11 C 0.04 0.71 2.61 85.56 0.22 0.93 16 12 C 0.50 15.78 7.07 87.66 0.62 16.40 16 13 O -0.57 -25.15 14.82 -3.06 -0.05 -25.20 16 14 N -0.60 -18.77 2.46 -826.11 -2.03 -20.80 16 15 C 0.23 9.48 4.23 85.63 0.36 9.84 16 16 C -0.53 -29.19 9.94 25.60 0.25 -28.94 16 17 H 0.03 1.74 8.06 -2.91 -0.02 1.71 16 18 C 0.01 0.36 5.47 84.65 0.46 0.83 16 19 N -0.95 -59.55 13.96 21.45 0.30 -59.25 16 20 Si 0.94 42.66 27.47 68.60 1.88 44.54 16 21 H -0.25 -10.26 7.11 99.48 0.71 -9.56 16 22 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 23 H -0.25 -10.49 6.54 99.48 0.65 -9.84 16 24 C 0.11 2.22 5.17 86.38 0.45 2.67 16 25 C -0.04 -0.43 6.03 28.79 0.17 -0.26 16 26 C 0.25 4.08 15.43 89.44 1.38 5.46 16 27 N -0.49 -11.53 18.54 20.01 0.37 -11.16 16 28 H 0.08 0.27 6.70 -2.39 -0.02 0.25 16 29 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.05 0.54 6.94 -2.39 -0.02 0.52 16 31 H 0.05 0.85 7.91 -2.39 -0.02 0.83 16 32 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.06 1.78 8.11 -2.52 -0.02 1.76 16 34 H 0.09 1.91 8.14 -2.52 -0.02 1.89 16 35 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 36 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.11 0.58 6.80 -2.38 -0.02 0.56 16 38 H 0.06 1.20 6.50 -2.39 -0.02 1.18 16 39 H 0.12 1.95 4.92 -2.39 -0.01 1.94 16 40 H 0.11 0.90 6.60 -2.39 -0.02 0.88 16 41 H 0.02 1.01 6.48 -2.39 -0.02 0.99 16 42 H 0.06 2.03 7.50 -2.39 -0.02 2.01 16 43 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 44 H 0.11 1.52 6.44 -2.38 -0.02 1.51 16 45 H 0.08 1.88 8.07 -2.39 -0.02 1.86 16 46 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.14 0.73 7.22 -2.39 -0.02 0.72 16 Total: -1.00 -98.38 382.60 0.57 -97.82 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: 0.92 Total: 7.43 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: 5.95 Total: -9.05 kcal Atomic # 7 Polarization: -99.81 SS G_CDS: -4.70 Total: -104.52 kcal Atomic # 8 Polarization: -57.35 SS G_CDS: -2.75 Total: -60.10 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 1.88 Total: 44.54 kcal Atomic # 16 Polarization: 24.62 SS G_CDS: -0.74 Total: 23.88 kcal Total: -98.38 0.57 -97.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331881160.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.444 kcal (2) G-P(sol) polarization free energy of solvation -98.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds